data_7EJC
#
_model_server_result.job_id            0TEOrtSrYU6WbD0LGUsecQ 
_model_server_result.datetime_utc      '2024-11-22 20:10:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ejc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":401}' 
#
_entry.id    7EJC 
#
_exptl.entry_id    7EJC 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 I N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E MG MG . A MG 601 1_555 K O3G ANP . B ANP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc2 E MG MG . A MG 601 1_555 K O2B ANP . B ANP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc3 G O3G ANP . C ANP 401 1_555 H MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc4 G O2B ANP . C ANP 401 1_555 H MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc5 I O3G ANP . C ANP 403 1_555 L MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc6 I O2B ANP . C ANP 403 1_555 L MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     7EJC 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MG A 1 601 601 MG MG . 
F 4 J46 A 1 602 1 J46 LIG . 
G 5 ANP C 1 401 600 ANP ANP . 
H 3 MG C 1 402 601 MG MG . 
I 5 ANP C 1 403 600 ANP ANP . 
J 4 J46 C 1 404 2 J46 LIG . 
K 5 ANP B 1 401 600 ANP ANP . 
L 3 MG B 1 402 601 MG MG . 
M 4 J46 B 1 403 3 J46 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . K 5 191.179 159.93 197.05 1 116.88 ? PG ANP 401 B 1 
HETATM 2 O O1G ANP . . . K 5 190.351 159.359 195.953 1 116.88 ? O1G ANP 401 B 1 
HETATM 3 O O2G ANP . . . K 5 190.281 160.814 197.985 1 116.88 ? O2G ANP 401 B 1 
HETATM 4 O O3G ANP . . . K 5 191.831 158.765 197.887 1 116.88 ? O3G ANP 401 B 1 
HETATM 5 P PB ANP . . . K 5 193.796 159.976 196.148 1 116.88 ? PB ANP 401 B 1 
HETATM 6 O O1B ANP . . . K 5 194.954 160.908 196.12 1 116.88 ? O1B ANP 401 B 1 
HETATM 7 O O2B ANP . . . K 5 194.001 158.904 197.265 1 116.88 ? O2B ANP 401 B 1 
HETATM 8 N N3B ANP . . . K 5 192.411 160.878 196.4 1 116.88 ? N3B ANP 401 B 1 
HETATM 9 P PA ANP . . . K 5 194.855 158.325 194.29 1 116.88 ? PA ANP 401 B 1 
HETATM 10 O O1A ANP . . . K 5 196.142 158.832 194.781 1 116.88 ? O1A ANP 401 B 1 
HETATM 11 O O2A ANP . . . K 5 194.502 156.913 194.755 1 116.88 ? O2A ANP 401 B 1 
HETATM 12 O O3A ANP . . . K 5 193.686 159.271 194.765 1 116.88 ? O3A ANP 401 B 1 
HETATM 13 O O5' ANP . . . K 5 194.88 158.424 192.726 1 116.88 ? O5' ANP 401 B 1 
HETATM 14 C C5' ANP . . . K 5 195.887 159.223 192.099 1 116.88 ? C5' ANP 401 B 1 
HETATM 15 C C4' ANP . . . K 5 196.071 158.75 190.683 1 116.88 ? C4' ANP 401 B 1 
HETATM 16 O O4' ANP . . . K 5 197.038 157.693 190.66 1 116.88 ? O4' ANP 401 B 1 
HETATM 17 C C3' ANP . . . K 5 194.83 158.153 190.032 1 116.88 ? C3' ANP 401 B 1 
HETATM 18 O O3' ANP . . . K 5 194.119 159.154 189.316 1 116.88 ? O3' ANP 401 B 1 
HETATM 19 C C2' ANP . . . K 5 195.392 157.085 189.077 1 116.88 ? C2' ANP 401 B 1 
HETATM 20 O O2' ANP . . . K 5 195.237 157.473 187.719 1 116.88 ? O2' ANP 401 B 1 
HETATM 21 C C1' ANP . . . K 5 196.877 156.994 189.45 1 116.88 ? C1' ANP 401 B 1 
HETATM 22 N N9 ANP . . . K 5 197.344 155.631 189.647 1 116.88 ? N9 ANP 401 B 1 
HETATM 23 C C8 ANP . . . K 5 196.883 154.729 190.568 1 116.88 ? C8 ANP 401 B 1 
HETATM 24 N N7 ANP . . . K 5 197.483 153.565 190.525 1 116.88 ? N7 ANP 401 B 1 
HETATM 25 C C5 ANP . . . K 5 198.407 153.712 189.499 1 116.88 ? C5 ANP 401 B 1 
HETATM 26 C C6 ANP . . . K 5 199.361 152.836 188.948 1 116.88 ? C6 ANP 401 B 1 
HETATM 27 N N6 ANP . . . K 5 199.549 151.585 189.371 1 116.88 ? N6 ANP 401 B 1 
HETATM 28 N N1 ANP . . . K 5 200.124 153.298 187.934 1 116.88 ? N1 ANP 401 B 1 
HETATM 29 C C2 ANP . . . K 5 199.939 154.551 187.51 1 116.88 ? C2 ANP 401 B 1 
HETATM 30 N N3 ANP . . . K 5 199.073 155.466 187.95 1 116.88 ? N3 ANP 401 B 1 
HETATM 31 C C4 ANP . . . K 5 198.332 154.981 188.952 1 116.88 ? C4 ANP 401 B 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#