data_7EJV # _model_server_result.job_id q66zktiq3SfMQapribfR5g _model_server_result.datetime_utc '2024-11-14 18:50:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ejv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7EJV # _exptl.entry_id 7EJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.598 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[6-[[4-[2-(dimethylamino)-1,3-benzothiazol-6-yl]-5-fluoranyl-pyrimidin-2-yl]amino]pyridin-3-yl]-(4-ethylpiperazin-1-yl)methanone' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EJV _cell.length_a 60.86 _cell.length_b 129.387 _cell.length_c 291.733 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 231 A THR 308 1_555 A N PTR 232 A PTR 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C PTR 232 A PTR 309 1_555 A N ILE 233 A ILE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C THR 229 B THR 308 1_555 B N PTR 230 B PTR 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 B C PTR 230 B PTR 309 1_555 B N ILE 231 B ILE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C25 H27 F N8 O S' _chem_comp.formula_weight 506.598 _chem_comp.id YK2 _chem_comp.mon_nstd_flag . _chem_comp.name '[6-[[4-[2-(dimethylamino)-1,3-benzothiazol-6-yl]-5-fluoranyl-pyrimidin-2-yl]amino]pyridin-3-yl]-(4-ethylpiperazin-1-yl)methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C08 N06 YK2 sing 405 n n N06 C05 YK2 sing 406 n n N06 C24 YK2 sing 407 n n N08 C24 YK2 doub 408 n y N08 C19 YK2 sing 409 n y C24 S01 YK2 sing 410 n y C19 C22 YK2 doub 411 n y C19 C18 YK2 sing 412 n y C22 C20 YK2 sing 413 n y S01 C18 YK2 sing 414 n y C18 C17 YK2 doub 415 n y C20 C13 YK2 doub 416 n y C17 C13 YK2 sing 417 n y C13 C12 YK2 sing 418 n n F01 C14 YK2 sing 419 n n C12 C14 YK2 sing 420 n y C12 N05 YK2 doub 421 n y C14 C16 YK2 doub 422 n y N05 C10 YK2 sing 423 n y C16 N07 YK2 sing 424 n y C06 C02 YK2 doub 425 n y C06 C07 YK2 sing 426 n y C10 N07 YK2 doub 427 n y C10 N03 YK2 sing 428 n n C02 C01 YK2 sing 429 n y C07 N03 YK2 sing 430 n n C07 N02 YK2 doub 431 n y O01 C03 YK2 doub 432 n n C01 C03 YK2 sing 433 n n C01 C04 YK2 doub 434 n y C03 N01 YK2 sing 435 n n C09 C11 YK2 sing 436 n n N01 C23 YK2 sing 437 n n N01 C25 YK2 sing 438 n n C23 C15 YK2 sing 439 n n N04 C15 YK2 sing 440 n n N04 C11 YK2 sing 441 n n N04 C21 YK2 sing 442 n n C25 C21 YK2 sing 443 n n N02 C04 YK2 sing 444 n y C02 H1 YK2 sing 445 n n C04 H2 YK2 sing 446 n n C05 H3 YK2 sing 447 n n C05 H4 YK2 sing 448 n n C05 H5 YK2 sing 449 n n C06 H6 YK2 sing 450 n n C08 H7 YK2 sing 451 n n C08 H8 YK2 sing 452 n n C08 H9 YK2 sing 453 n n C09 H10 YK2 sing 454 n n C09 H11 YK2 sing 455 n n C09 H12 YK2 sing 456 n n C11 H14 YK2 sing 457 n n C11 H15 YK2 sing 458 n n C15 H18 YK2 sing 459 n n C15 H19 YK2 sing 460 n n C16 H20 YK2 sing 461 n n C17 H22 YK2 sing 462 n n C20 H23 YK2 sing 463 n n C21 H24 YK2 sing 464 n n C21 H25 YK2 sing 465 n n C22 H26 YK2 sing 466 n n C23 H27 YK2 sing 467 n n C23 H28 YK2 sing 468 n n C25 H29 YK2 sing 469 n n C25 H30 YK2 sing 470 n n N03 H31 YK2 sing 471 n n # _atom_sites.entry_id 7EJV _atom_sites.fract_transf_matrix[1][1] 0.016431 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007729 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 YK2 A 1 501 2 YK2 YK2 . D 3 YK2 B 1 501 1 YK2 YK2 . E 4 HOH A 1 601 41 HOH HOH . E 4 HOH A 2 602 36 HOH HOH . E 4 HOH A 3 603 2 HOH HOH . E 4 HOH A 4 604 25 HOH HOH . E 4 HOH A 5 605 20 HOH HOH . E 4 HOH A 6 606 17 HOH HOH . E 4 HOH A 7 607 12 HOH HOH . E 4 HOH A 8 608 11 HOH HOH . E 4 HOH A 9 609 16 HOH HOH . E 4 HOH A 10 610 3 HOH HOH . E 4 HOH A 11 611 35 HOH HOH . E 4 HOH A 12 612 39 HOH HOH . E 4 HOH A 13 613 19 HOH HOH . E 4 HOH A 14 614 26 HOH HOH . E 4 HOH A 15 615 13 HOH HOH . F 4 HOH B 1 601 24 HOH HOH . F 4 HOH B 2 602 29 HOH HOH . F 4 HOH B 3 603 10 HOH HOH . F 4 HOH B 4 604 9 HOH HOH . F 4 HOH B 5 605 40 HOH HOH . F 4 HOH B 6 606 28 HOH HOH . F 4 HOH B 7 607 8 HOH HOH . F 4 HOH B 8 608 32 HOH HOH . F 4 HOH B 9 609 34 HOH HOH . F 4 HOH B 10 610 22 HOH HOH . F 4 HOH B 11 611 30 HOH HOH . F 4 HOH B 12 612 37 HOH HOH . F 4 HOH B 13 613 18 HOH HOH . F 4 HOH B 14 614 5 HOH HOH . F 4 HOH B 15 615 1 HOH HOH . F 4 HOH B 16 616 21 HOH HOH . F 4 HOH B 17 617 15 HOH HOH . F 4 HOH B 18 618 23 HOH HOH . F 4 HOH B 19 619 27 HOH HOH . F 4 HOH B 20 620 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 YK2 . . . C 3 -14.699 -27.069 25.561 1 72.92 ? C01 YK2 501 A 1 HETATM 2 C C02 YK2 . . . C 3 -15.059 -27.627 24.382 1 73.15 ? C02 YK2 501 A 1 HETATM 3 C C03 YK2 . . . C 3 -15.67 -26.991 26.743 1 72.59 ? C03 YK2 501 A 1 HETATM 4 C C04 YK2 . . . C 3 -13.4 -26.571 25.735 1 75.42 ? C04 YK2 501 A 1 HETATM 5 C C05 YK2 . . . C 3 -7.828 -17.824 27.607 1 77.23 ? C05 YK2 501 A 1 HETATM 6 C C06 YK2 . . . C 3 -14.173 -27.686 23.374 1 75.86 ? C06 YK2 501 A 1 HETATM 7 C C07 YK2 . . . C 3 -12.897 -27.19 23.518 1 73.74 ? C07 YK2 501 A 1 HETATM 8 C C08 YK2 . . . C 3 -9.939 -18.805 28.65 1 64.37 ? C08 YK2 501 A 1 HETATM 9 C C09 YK2 . . . C 3 -21.228 -27.047 25.151 1 100.66 ? C09 YK2 501 A 1 HETATM 10 C C10 YK2 . . . C 3 -11.038 -26.293 21.981 1 71.02 ? C10 YK2 501 A 1 HETATM 11 C C11 YK2 . . . C 3 -20.836 -26.087 26.282 1 108.08 ? C11 YK2 501 A 1 HETATM 12 C C12 YK2 . . . C 3 -9.352 -24.714 22.632 1 67.81 ? C12 YK2 501 A 1 HETATM 13 C C13 YK2 . . . C 3 -8.832 -23.526 23.404 1 67.02 ? C13 YK2 501 A 1 HETATM 14 C C14 YK2 . . . C 3 -8.269 -25.545 21.895 1 75.98 ? C14 YK2 501 A 1 HETATM 15 C C15 YK2 . . . C 3 -19.163 -25.682 27.637 1 105.87 ? C15 YK2 501 A 1 HETATM 16 C C16 YK2 . . . C 3 -8.721 -26.771 21.221 1 77.67 ? C16 YK2 501 A 1 HETATM 17 C C17 YK2 . . . C 3 -9.696 -23.011 24.346 1 64.92 ? C17 YK2 501 A 1 HETATM 18 C C18 YK2 . . . C 3 -9.302 -21.922 25.098 1 64.23 ? C18 YK2 501 A 1 HETATM 19 C C19 YK2 . . . C 3 -8.077 -21.382 24.913 1 65.77 ? C19 YK2 501 A 1 HETATM 20 C C20 YK2 . . . C 3 -7.587 -22.985 23.21 1 67.85 ? C20 YK2 501 A 1 HETATM 21 C C21 YK2 . . . C 3 -18.923 -25.343 25.537 1 109.88 ? C21 YK2 501 A 1 HETATM 22 C C22 YK2 . . . C 3 -7.197 -21.902 23.966 1 68.94 ? C22 YK2 501 A 1 HETATM 23 C C23 YK2 . . . C 3 -17.779 -26.251 27.939 1 94.29 ? C23 YK2 501 A 1 HETATM 24 C C24 YK2 . . . C 3 -8.899 -19.889 26.686 1 64.57 ? C24 YK2 501 A 1 HETATM 25 C C25 YK2 . . . C 3 -17.395 -25.535 25.545 1 98.42 ? C25 YK2 501 A 1 HETATM 26 F F01 YK2 . . . C 3 -7.463 -24.803 21.075 1 72.56 ? F01 YK2 501 A 1 HETATM 27 N N01 YK2 . . . C 3 -16.943 -26.26 26.733 1 87.19 ? N01 YK2 501 A 1 HETATM 28 N N02 YK2 . . . C 3 -12.514 -26.646 24.695 1 72.79 ? N02 YK2 501 A 1 HETATM 29 N N03 YK2 . . . C 3 -11.98 -27.311 22.395 1 73.36 ? N03 YK2 501 A 1 HETATM 30 N N04 YK2 . . . C 3 -19.517 -26.077 26.446 1 112 ? N04 YK2 501 A 1 HETATM 31 N N05 YK2 . . . C 3 -10.521 -25.536 23.116 1 64.03 ? N05 YK2 501 A 1 HETATM 32 N N06 YK2 . . . C 3 -8.891 -18.824 27.649 1 66.91 ? N06 YK2 501 A 1 HETATM 33 N N07 YK2 . . . C 3 -10.133 -26.7 20.986 1 74.23 ? N07 YK2 501 A 1 HETATM 34 N N08 YK2 . . . C 3 -7.878 -20.297 25.767 1 70.13 ? N08 YK2 501 A 1 HETATM 35 O O01 YK2 . . . C 3 -15.328 -27.556 27.72 1 63.34 ? O01 YK2 501 A 1 HETATM 36 S S01 YK2 . . . C 3 -10.173 -21.107 26.291 1 65.38 ? S01 YK2 501 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #