data_7EJZ # _model_server_result.job_id VWyDB6ztr1U-lK4nNusQ-Q _model_server_result.datetime_utc '2024-11-21 09:21:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ejz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 7EJZ # _exptl.entry_id 7EJZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EJZ _cell.length_a 80.711 _cell.length_b 145.915 _cell.length_c 146.789 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EJZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 R CYS 336 1_555 A SG CYS 43 R CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf2 A SG CYS 61 R CYS 379 1_555 A SG CYS 114 R CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf3 A SG CYS 73 R CYS 391 1_555 A SG CYS 207 R CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? disulf ? disulf4 A SG CYS 162 R CYS 480 1_555 A SG CYS 170 R CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 144 H CYS 144 1_555 B SG CYS 200 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf8 C SG CYS 135 L CYS 135 1_555 C SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? covale ? covale1 A ND2 ASN 25 R ASN 343 1_555 D C1 NAG . R NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.571 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7EJZ _atom_sites.fract_transf_matrix[1][1] 0.01239 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 601 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 -12.625 -1.621 -10.675 1 187.96 ? C1 NAG 601 R 1 HETATM 2 C C2 NAG . . . D 4 -13.035 -1.846 -12.137 1 188.23 ? C2 NAG 601 R 1 HETATM 3 C C3 NAG . . . D 4 -14.562 -1.786 -12.238 1 188.69 ? C3 NAG 601 R 1 HETATM 4 C C4 NAG . . . D 4 -15.283 -2.836 -11.4 1 189.13 ? C4 NAG 601 R 1 HETATM 5 C C5 NAG . . . D 4 -14.652 -2.869 -10.008 1 188.62 ? C5 NAG 601 R 1 HETATM 6 C C6 NAG . . . D 4 -15.016 -4.121 -9.204 1 188.95 ? C6 NAG 601 R 1 HETATM 7 C C7 NAG . . . D 4 -11.667 -1.057 -14.056 1 188.71 ? C7 NAG 601 R 1 HETATM 8 C C8 NAG . . . D 4 -11.093 -2.426 -14.228 1 188.61 ? C8 NAG 601 R 1 HETATM 9 N N2 NAG . . . D 4 -12.553 -0.853 -13.082 1 188.17 ? N2 NAG 601 R 1 HETATM 10 O O3 NAG . . . D 4 -14.931 -1.951 -13.603 1 189.28 ? O3 NAG 601 R 1 HETATM 11 O O4 NAG . . . D 4 -16.704 -2.566 -11.37 1 189.65 ? O4 NAG 601 R 1 HETATM 12 O O5 NAG . . . D 4 -13.219 -2.794 -10.104 1 188.1 ? O5 NAG 601 R 1 HETATM 13 O O6 NAG . . . D 4 -14.592 -4.004 -7.833 1 188.59 ? O6 NAG 601 R 1 HETATM 14 O O7 NAG . . . D 4 -11.324 -0.151 -14.774 1 189.41 ? O7 NAG 601 R 1 HETATM 15 H H1 NAG . . . D 4 -13.516 -0.849 -10.463 1 80.22 ? H1 NAG 601 R 1 HETATM 16 H H2 NAG . . . D 4 -12.701 -2.844 -12.449 1 80.31 ? H2 NAG 601 R 1 HETATM 17 H H3 NAG . . . D 4 -14.887 -0.794 -11.895 1 80.2 ? H3 NAG 601 R 1 HETATM 18 H H4 NAG . . . D 4 -15.116 -3.815 -11.87 1 80.33 ? H4 NAG 601 R 1 HETATM 19 H H5 NAG . . . D 4 -15.019 -1.995 -9.452 1 79.88 ? H5 NAG 601 R 1 HETATM 20 H H61 NAG . . . D 4 -14.541 -4.994 -9.658 1 80.22 ? H61 NAG 601 R 1 HETATM 21 H H62 NAG . . . D 4 -16.097 -4.273 -9.237 1 80.22 ? H62 NAG 601 R 1 HETATM 22 H H81 NAG . . . D 4 -11.088 -2.678 -15.257 1 81.76 ? H81 NAG 601 R 1 HETATM 23 H H82 NAG . . . D 4 -11.679 -3.131 -13.698 1 81.76 ? H82 NAG 601 R 1 HETATM 24 H H83 NAG . . . D 4 -10.102 -2.443 -13.858 1 81.76 ? H83 NAG 601 R 1 HETATM 25 H HN2 NAG . . . D 4 -12.929 0.078 -12.979 1 80.85 ? HN2 NAG 601 R 1 HETATM 26 H HO3 NAG . . . D 4 -14.794 -1.12 -14.077 1 80.71 ? HO3 NAG 601 R 1 HETATM 27 H HO4 NAG . . . D 4 -16.849 -1.619 -11.237 1 80.38 ? HO4 NAG 601 R 1 HETATM 28 H HO6 NAG . . . D 4 -14.695 -4.857 -7.39 1 80.26 ? HO6 NAG 601 R 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #