data_7EKT # _model_server_result.job_id t5HAemxv0R6_YWcjqTlQ4A _model_server_result.datetime_utc '2024-11-18 02:44:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ekt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":604}' # _entry.id 7EKT # _exptl.entry_id 7EKT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EKT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EKT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 R N N ? 4 V N N ? 4 Z N N ? 4 DA N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n F NAG 1 F 1 NAG A 612 NAG 2 n F NAG 2 F 2 NAG A 613 NAG 2 n G NAG 1 G 1 NAG B 612 NAG 2 n G NAG 2 G 2 NAG B 613 NAG 2 n H NAG 1 H 1 NAG C 612 NAG 2 n H NAG 2 H 2 NAG C 613 NAG 2 n I NAG 1 I 1 NAG D 612 NAG 2 n I NAG 2 I 2 NAG D 613 NAG 2 n J NAG 1 J 1 NAG E 612 NAG 2 n J NAG 2 J 2 NAG E 613 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 150 A CYS 150 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 212 A CYS 212 1_555 A SG CYS 213 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 B SG CYS 150 B CYS 150 1_555 B SG CYS 164 B CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 212 B CYS 212 1_555 B SG CYS 213 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 C SG CYS 150 C CYS 150 1_555 C SG CYS 164 C CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 C SG CYS 212 C CYS 212 1_555 C SG CYS 213 C CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 D SG CYS 150 D CYS 150 1_555 D SG CYS 164 D CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 D SG CYS 212 D CYS 212 1_555 D SG CYS 213 D CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf9 E SG CYS 150 E CYS 150 1_555 E SG CYS 164 E CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 E SG CYS 212 E CYS 212 1_555 E SG CYS 213 E CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 A ND2 ASN 46 A ASN 46 1_555 K C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 133 A ASN 133 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 B ND2 ASN 46 B ASN 46 1_555 Q C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 B ND2 ASN 133 B ASN 133 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 C ND2 ASN 46 C ASN 46 1_555 U C1 NAG . C NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 C ND2 ASN 133 C ASN 133 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 D ND2 ASN 46 D ASN 46 1_555 Y C1 NAG . D NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 D ND2 ASN 133 D ASN 133 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 E ND2 ASN 46 E ASN 46 1_555 CA C1 NAG . E NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale10 E ND2 ASN 133 E ASN 133 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale12 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale13 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale14 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale15 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7EKT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 3 NAG A 1 601 611 NAG NAG . L 4 CLR A 1 602 621 CLR CLR . M 5 I33 A 1 603 601 I33 I33 . N 6 I34 A 1 604 602 I34 I34 . O 5 I33 B 1 601 601 I33 I33 . P 6 I34 B 1 602 602 I34 I34 . Q 3 NAG B 1 603 611 NAG NAG . R 4 CLR B 1 604 621 CLR CLR . S 5 I33 C 1 601 601 I33 I33 . T 6 I34 C 1 602 602 I34 I34 . U 3 NAG C 1 603 611 NAG NAG . V 4 CLR C 1 604 621 CLR CLR . W 5 I33 D 1 601 601 I33 I33 . X 6 I34 D 1 602 602 I34 I34 . Y 3 NAG D 1 603 611 NAG NAG . Z 4 CLR D 1 604 621 CLR CLR . AA 5 I33 E 1 601 601 I33 I33 . BA 6 I34 E 1 602 602 I34 I34 . CA 3 NAG E 1 603 611 NAG NAG . DA 4 CLR E 1 604 621 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . R 4 95.032 110.112 84.577 1 111.2 ? C1 CLR 604 B 1 HETATM 2 C C2 CLR . . . R 4 94.888 109.301 83.24 1 109.84 ? C2 CLR 604 B 1 HETATM 3 C C3 CLR . . . R 4 93.505 109.627 82.684 1 108.77 ? C3 CLR 604 B 1 HETATM 4 C C4 CLR . . . R 4 93.49 111.115 82.247 1 110.37 ? C4 CLR 604 B 1 HETATM 5 C C5 CLR . . . R 4 93.723 111.962 83.531 1 111.4 ? C5 CLR 604 B 1 HETATM 6 C C6 CLR . . . R 4 92.86 112.998 83.821 1 111.17 ? C6 CLR 604 B 1 HETATM 7 C C7 CLR . . . R 4 92.993 113.907 85.064 1 110.91 ? C7 CLR 604 B 1 HETATM 8 C C8 CLR . . . R 4 94.349 113.834 85.797 1 111.1 ? C8 CLR 604 B 1 HETATM 9 C C9 CLR . . . R 4 94.733 112.34 85.918 1 111.64 ? C9 CLR 604 B 1 HETATM 10 C C10 CLR . . . R 4 94.893 111.661 84.459 1 112.26 ? C10 CLR 604 B 1 HETATM 11 C C11 CLR . . . R 4 96.007 112.169 86.8 1 111.31 ? C11 CLR 604 B 1 HETATM 12 C C12 CLR . . . R 4 96.12 113.051 88.109 1 111.35 ? C12 CLR 604 B 1 HETATM 13 C C13 CLR . . . R 4 95.701 114.509 87.827 1 111.96 ? C13 CLR 604 B 1 HETATM 14 C C14 CLR . . . R 4 94.29 114.486 87.24 1 111.13 ? C14 CLR 604 B 1 HETATM 15 C C15 CLR . . . R 4 93.846 115.974 87.303 1 110.81 ? C15 CLR 604 B 1 HETATM 16 C C16 CLR . . . R 4 94.555 116.526 88.6 1 111.74 ? C16 CLR 604 B 1 HETATM 17 C C17 CLR . . . R 4 95.595 115.444 89.086 1 113.72 ? C17 CLR 604 B 1 HETATM 18 C C18 CLR . . . R 4 96.678 115.188 86.796 1 112.04 ? C18 CLR 604 B 1 HETATM 19 C C19 CLR . . . R 4 96.216 112.21 83.809 1 113.78 ? C19 CLR 604 B 1 HETATM 20 C C20 CLR . . . R 4 97.006 116.107 89.478 1 117.93 ? C20 CLR 604 B 1 HETATM 21 C C21 CLR . . . R 4 98.159 115.129 89.238 1 117.41 ? C21 CLR 604 B 1 HETATM 22 C C22 CLR . . . R 4 96.981 116.533 91.007 1 123.44 ? C22 CLR 604 B 1 HETATM 23 C C23 CLR . . . R 4 95.553 117.084 91.439 1 129.13 ? C23 CLR 604 B 1 HETATM 24 C C24 CLR . . . R 4 95.563 118.654 91.66 1 134.41 ? C24 CLR 604 B 1 HETATM 25 C C25 CLR . . . R 4 94.67 119.103 92.9 1 139.19 ? C25 CLR 604 B 1 HETATM 26 C C26 CLR . . . R 4 94.855 118.049 94.037 1 141.2 ? C26 CLR 604 B 1 HETATM 27 C C27 CLR . . . R 4 93.179 119.112 92.456 1 140.72 ? C27 CLR 604 B 1 HETATM 28 O O1 CLR . . . R 4 93.409 108.806 81.42 1 106.65 ? O1 CLR 604 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #