data_7EKV # _model_server_result.job_id '_M9XP_tSlLgxumQ-kR1wRA' _model_server_result.datetime_utc '2024-10-19 05:27:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ekv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7EKV # _exptl.entry_id 7EKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 404.91 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-(2-chloroacetyl)-4-((5-phenylfuran-2-yl)methyl)-1-thia-4,8-diazaspiro[4.5]decan-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7EKV _cell.length_a 68.637 _cell.length_b 68.637 _cell.length_c 79.813 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 133 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 113 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C24 _struct_conn.ptnr2_label_comp_id J50 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id J50 _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.698 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H21 Cl N2 O3 S' _chem_comp.formula_weight 404.91 _chem_comp.id J50 _chem_comp.mon_nstd_flag . _chem_comp.name 8-(2-chloroacetyl)-4-((5-phenylfuran-2-yl)methyl)-1-thia-4,8-diazaspiro[4.5]decan-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C14 J50 sing 173 n n C17 C22 J50 doub 174 n y C17 C18 J50 sing 175 n y C12 C16 J50 doub 176 n y C12 C11 J50 sing 177 n n C12 O13 J50 sing 178 n y C14 C15 J50 doub 179 n y C14 O13 J50 sing 180 n y C15 C16 J50 sing 181 n y C19 C20 J50 sing 182 n y C19 C18 J50 doub 183 n y C20 C21 J50 doub 184 n y C21 C22 J50 sing 185 n y C23 C24 J50 sing 186 n n C23 N02 J50 sing 187 n n C23 O25 J50 doub 188 n n C11 N10 J50 sing 189 n n C01 C06 J50 sing 190 n n C01 N02 J50 sing 191 n n C03 C04 J50 sing 192 n n C03 N02 J50 sing 193 n n C04 C05 J50 sing 194 n n C05 C06 J50 sing 195 n n C05 N10 J50 sing 196 n n C05 S07 J50 sing 197 n n C08 C09 J50 sing 198 n n C08 S07 J50 sing 199 n n C09 N10 J50 sing 200 n n C09 O26 J50 doub 201 n n C15 H1 J50 sing 202 n n C16 H2 J50 sing 203 n n C19 H3 J50 sing 204 n n C20 H4 J50 sing 205 n n C21 H5 J50 sing 206 n n C22 H6 J50 sing 207 n n C24 H7 J50 sing 208 n n C24 H8 J50 sing 209 n n C24 CL1 J50 sing 210 n n C11 H10 J50 sing 211 n n C11 H11 J50 sing 212 n n C18 H12 J50 sing 213 n n C01 H13 J50 sing 214 n n C01 H14 J50 sing 215 n n C03 H15 J50 sing 216 n n C03 H16 J50 sing 217 n n C04 H17 J50 sing 218 n n C06 H18 J50 sing 219 n n C06 H19 J50 sing 220 n n C08 H20 J50 sing 221 n n C08 H21 J50 sing 222 n n C04 H22 J50 sing 223 n n # _atom_sites.entry_id 7EKV _atom_sites.fract_transf_matrix[1][1] 0.014569 _atom_sites.fract_transf_matrix[1][2] 0.008412 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J50 A 1 201 201 J50 117 . C 3 PE8 A 1 202 301 PE8 PE8 . D 4 HOH A 1 301 164 HOH HOH . D 4 HOH A 2 302 157 HOH HOH . D 4 HOH A 3 303 161 HOH HOH . D 4 HOH A 4 304 34 HOH HOH . D 4 HOH A 5 305 173 HOH HOH . D 4 HOH A 6 306 1 HOH HOH . D 4 HOH A 7 307 160 HOH HOH . D 4 HOH A 8 308 179 HOH HOH . D 4 HOH A 9 309 2 HOH HOH . D 4 HOH A 10 310 89 HOH HOH . D 4 HOH A 11 311 3 HOH HOH . D 4 HOH A 12 312 122 HOH HOH . D 4 HOH A 13 313 93 HOH HOH . D 4 HOH A 14 314 48 HOH HOH . D 4 HOH A 15 315 130 HOH HOH . D 4 HOH A 16 316 36 HOH HOH . D 4 HOH A 17 317 123 HOH HOH . D 4 HOH A 18 318 45 HOH HOH . D 4 HOH A 19 319 147 HOH HOH . D 4 HOH A 20 320 5 HOH HOH . D 4 HOH A 21 321 19 HOH HOH . D 4 HOH A 22 322 21 HOH HOH . D 4 HOH A 23 323 61 HOH HOH . D 4 HOH A 24 324 30 HOH HOH . D 4 HOH A 25 325 58 HOH HOH . D 4 HOH A 26 326 14 HOH HOH . D 4 HOH A 27 327 29 HOH HOH . D 4 HOH A 28 328 41 HOH HOH . D 4 HOH A 29 329 152 HOH HOH . D 4 HOH A 30 330 11 HOH HOH . D 4 HOH A 31 331 15 HOH HOH . D 4 HOH A 32 332 101 HOH HOH . D 4 HOH A 33 333 66 HOH HOH . D 4 HOH A 34 334 32 HOH HOH . D 4 HOH A 35 335 127 HOH HOH . D 4 HOH A 36 336 82 HOH HOH . D 4 HOH A 37 337 8 HOH HOH . D 4 HOH A 38 338 140 HOH HOH . D 4 HOH A 39 339 107 HOH HOH . D 4 HOH A 40 340 9 HOH HOH . D 4 HOH A 41 341 20 HOH HOH . D 4 HOH A 42 342 57 HOH HOH . D 4 HOH A 43 343 116 HOH HOH . D 4 HOH A 44 344 70 HOH HOH . D 4 HOH A 45 345 108 HOH HOH . D 4 HOH A 46 346 4 HOH HOH . D 4 HOH A 47 347 136 HOH HOH . D 4 HOH A 48 348 129 HOH HOH . D 4 HOH A 49 349 43 HOH HOH . D 4 HOH A 50 350 6 HOH HOH . D 4 HOH A 51 351 175 HOH HOH . D 4 HOH A 52 352 27 HOH HOH . D 4 HOH A 53 353 38 HOH HOH . D 4 HOH A 54 354 156 HOH HOH . D 4 HOH A 55 355 25 HOH HOH . D 4 HOH A 56 356 59 HOH HOH . D 4 HOH A 57 357 83 HOH HOH . D 4 HOH A 58 358 134 HOH HOH . D 4 HOH A 59 359 35 HOH HOH . D 4 HOH A 60 360 7 HOH HOH . D 4 HOH A 61 361 17 HOH HOH . D 4 HOH A 62 362 47 HOH HOH . D 4 HOH A 63 363 40 HOH HOH . D 4 HOH A 64 364 62 HOH HOH . D 4 HOH A 65 365 166 HOH HOH . D 4 HOH A 66 366 31 HOH HOH . D 4 HOH A 67 367 42 HOH HOH . D 4 HOH A 68 368 150 HOH HOH . D 4 HOH A 69 369 85 HOH HOH . D 4 HOH A 70 370 77 HOH HOH . D 4 HOH A 71 371 12 HOH HOH . D 4 HOH A 72 372 95 HOH HOH . D 4 HOH A 73 373 149 HOH HOH . D 4 HOH A 74 374 117 HOH HOH . D 4 HOH A 75 375 94 HOH HOH . D 4 HOH A 76 376 13 HOH HOH . D 4 HOH A 77 377 154 HOH HOH . D 4 HOH A 78 378 126 HOH HOH . D 4 HOH A 79 379 60 HOH HOH . D 4 HOH A 80 380 44 HOH HOH . D 4 HOH A 81 381 49 HOH HOH . D 4 HOH A 82 382 174 HOH HOH . D 4 HOH A 83 383 55 HOH HOH . D 4 HOH A 84 384 46 HOH HOH . D 4 HOH A 85 385 18 HOH HOH . D 4 HOH A 86 386 23 HOH HOH . D 4 HOH A 87 387 75 HOH HOH . D 4 HOH A 88 388 53 HOH HOH . D 4 HOH A 89 389 16 HOH HOH . D 4 HOH A 90 390 158 HOH HOH . D 4 HOH A 91 391 102 HOH HOH . D 4 HOH A 92 392 50 HOH HOH . D 4 HOH A 93 393 118 HOH HOH . D 4 HOH A 94 394 110 HOH HOH . D 4 HOH A 95 395 10 HOH HOH . D 4 HOH A 96 396 96 HOH HOH . D 4 HOH A 97 397 109 HOH HOH . D 4 HOH A 98 398 163 HOH HOH . D 4 HOH A 99 399 65 HOH HOH . D 4 HOH A 100 400 125 HOH HOH . D 4 HOH A 101 401 172 HOH HOH . D 4 HOH A 102 402 165 HOH HOH . D 4 HOH A 103 403 63 HOH HOH . D 4 HOH A 104 404 151 HOH HOH . D 4 HOH A 105 405 115 HOH HOH . D 4 HOH A 106 406 103 HOH HOH . D 4 HOH A 107 407 139 HOH HOH . D 4 HOH A 108 408 111 HOH HOH . D 4 HOH A 109 409 54 HOH HOH . D 4 HOH A 110 410 51 HOH HOH . D 4 HOH A 111 411 64 HOH HOH . D 4 HOH A 112 412 105 HOH HOH . D 4 HOH A 113 413 155 HOH HOH . D 4 HOH A 114 414 39 HOH HOH . D 4 HOH A 115 415 137 HOH HOH . D 4 HOH A 116 416 28 HOH HOH . D 4 HOH A 117 417 87 HOH HOH . D 4 HOH A 118 418 74 HOH HOH . D 4 HOH A 119 419 169 HOH HOH . D 4 HOH A 120 420 141 HOH HOH . D 4 HOH A 121 421 167 HOH HOH . D 4 HOH A 122 422 24 HOH HOH . D 4 HOH A 123 423 68 HOH HOH . D 4 HOH A 124 424 148 HOH HOH . D 4 HOH A 125 425 90 HOH HOH . D 4 HOH A 126 426 144 HOH HOH . D 4 HOH A 127 427 73 HOH HOH . D 4 HOH A 128 428 22 HOH HOH . D 4 HOH A 129 429 81 HOH HOH . D 4 HOH A 130 430 106 HOH HOH . D 4 HOH A 131 431 26 HOH HOH . D 4 HOH A 132 432 67 HOH HOH . D 4 HOH A 133 433 133 HOH HOH . D 4 HOH A 134 434 132 HOH HOH . D 4 HOH A 135 435 168 HOH HOH . D 4 HOH A 136 436 181 HOH HOH . D 4 HOH A 137 437 69 HOH HOH . D 4 HOH A 138 438 114 HOH HOH . D 4 HOH A 139 439 33 HOH HOH . D 4 HOH A 140 440 92 HOH HOH . D 4 HOH A 141 441 80 HOH HOH . D 4 HOH A 142 442 138 HOH HOH . D 4 HOH A 143 443 120 HOH HOH . D 4 HOH A 144 444 170 HOH HOH . D 4 HOH A 145 445 91 HOH HOH . D 4 HOH A 146 446 72 HOH HOH . D 4 HOH A 147 447 99 HOH HOH . D 4 HOH A 148 448 79 HOH HOH . D 4 HOH A 149 449 52 HOH HOH . D 4 HOH A 150 450 182 HOH HOH . D 4 HOH A 151 451 88 HOH HOH . D 4 HOH A 152 452 128 HOH HOH . D 4 HOH A 153 453 84 HOH HOH . D 4 HOH A 154 454 97 HOH HOH . D 4 HOH A 155 455 162 HOH HOH . D 4 HOH A 156 456 119 HOH HOH . D 4 HOH A 157 457 71 HOH HOH . D 4 HOH A 158 458 98 HOH HOH . D 4 HOH A 159 459 124 HOH HOH . D 4 HOH A 160 460 100 HOH HOH . D 4 HOH A 161 461 37 HOH HOH . D 4 HOH A 162 462 78 HOH HOH . D 4 HOH A 163 463 56 HOH HOH . D 4 HOH A 164 464 131 HOH HOH . D 4 HOH A 165 465 113 HOH HOH . D 4 HOH A 166 466 112 HOH HOH . D 4 HOH A 167 467 121 HOH HOH . D 4 HOH A 168 468 86 HOH HOH . D 4 HOH A 169 469 76 HOH HOH . D 4 HOH A 170 470 184 HOH HOH . D 4 HOH A 171 471 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C17 J50 . . . B 2 -38.468 11.345 18.708 1 47.93 ? C17 J50 201 A 1 HETATM 2 C C12 J50 . . . B 2 -39.894 12.348 15.44 1 37.83 ? C12 J50 201 A 1 HETATM 3 C C14 J50 . . . B 2 -39.143 11.432 17.323 1 45.49 ? C14 J50 201 A 1 HETATM 4 C C15 J50 . . . B 2 -39.675 10.412 16.544 1 40.3 ? C15 J50 201 A 1 HETATM 5 C C16 J50 . . . B 2 -40.142 10.979 15.38 1 38.48 ? C16 J50 201 A 1 HETATM 6 C C19 J50 . . . B 2 -37.68 12.591 20.926 1 35.4 ? C19 J50 201 A 1 HETATM 7 C C20 J50 . . . B 2 -37.098 11.268 21.441 1 43.93 ? C20 J50 201 A 1 HETATM 8 C C21 J50 . . . B 2 -37.187 9.985 20.597 1 42.08 ? C21 J50 201 A 1 HETATM 9 C C22 J50 . . . B 2 -37.868 10.023 19.221 1 45.87 ? C22 J50 201 A 1 HETATM 10 C C23 J50 . . . B 2 -40.957 19.377 16.62 1 19.42 ? C23 J50 201 A 1 HETATM 11 C C24 J50 . . . B 2 -41.242 19.432 18.137 1 24.14 ? C24 J50 201 A 1 HETATM 12 C C11 J50 . . . B 2 -40.215 13.433 14.388 1 31.4 ? C11 J50 201 A 1 HETATM 13 C C18 J50 . . . B 2 -38.365 12.627 19.554 1 42.15 ? C18 J50 201 A 1 HETATM 14 C C01 J50 . . . B 2 -39.95 18.062 14.587 1 22.59 ? C01 J50 201 A 1 HETATM 15 C C03 J50 . . . B 2 -39.538 17.211 16.924 1 22.32 ? C03 J50 201 A 1 HETATM 16 C C04 J50 . . . B 2 -39.346 15.8 16.381 1 21.97 ? C04 J50 201 A 1 HETATM 17 C C05 J50 . . . B 2 -39.004 15.731 14.984 1 27.63 ? C05 J50 201 A 1 HETATM 18 C C06 J50 . . . B 2 -39.944 16.582 14.206 1 24.59 ? C06 J50 201 A 1 HETATM 19 C C08 J50 . . . B 2 -36.739 15.387 13.654 1 22.69 ? C08 J50 201 A 1 HETATM 20 C C09 J50 . . . B 2 -37.649 14.122 13.521 1 22.42 ? C09 J50 201 A 1 HETATM 21 N N02 J50 . . . B 2 -40.198 18.263 16.058 1 16.72 ? N02 J50 201 A 1 HETATM 22 N N10 J50 . . . B 2 -39.055 14.36 14.355 1 25.91 ? N10 J50 201 A 1 HETATM 23 O O13 J50 . . . B 2 -39.278 12.61 16.629 1 45.83 ? O13 J50 201 A 1 HETATM 24 O O25 J50 . . . B 2 -41.352 20.235 15.904 1 23.96 ? O25 J50 201 A 1 HETATM 25 O O26 J50 . . . B 2 -37.418 13.122 12.933 1 26 ? O26 J50 201 A 1 HETATM 26 S S07 J50 . . . B 2 -37.412 16.39 14.814 1 22.81 ? S07 J50 201 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #