data_7EM4 # _model_server_result.job_id emI2VFmKvYUvIoCDrpzINA _model_server_result.datetime_utc '2024-11-24 21:39:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7em4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7EM4 # _exptl.entry_id 7EM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 428.186 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "INOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EM4 _cell.length_a 109.311 _cell.length_b 185.53 _cell.length_c 105.744 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H14 N4 O11 P2' _chem_comp.formula_weight 428.186 _chem_comp.id IDP _chem_comp.mon_nstd_flag . _chem_comp.name "INOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B IDP doub 200 n n PB O2B IDP sing 201 n n PB O3B IDP sing 202 n n PB O3A IDP sing 203 n n O2B HOB2 IDP sing 204 n n O3B HOB3 IDP sing 205 n n PA O1A IDP doub 206 n n PA O2A IDP sing 207 n n PA O3A IDP sing 208 n n PA O5' IDP sing 209 n n O2A HOA2 IDP sing 210 n n O5' C5' IDP sing 211 n n C5' C4' IDP sing 212 n n C5' "H5'1" IDP sing 213 n n C5' "H5'2" IDP sing 214 n n C4' O4' IDP sing 215 n n C4' C3' IDP sing 216 n n C4' H4' IDP sing 217 n n O4' C1' IDP sing 218 n n C3' O3' IDP sing 219 n n C3' C2' IDP sing 220 n n C3' H3' IDP sing 221 n n O3' HO3' IDP sing 222 n n C2' O2' IDP sing 223 n n C2' C1' IDP sing 224 n n C2' H2' IDP sing 225 n n O2' HO2' IDP sing 226 n n C1' N9 IDP sing 227 n n C1' H1' IDP sing 228 n n N9 C8 IDP sing 229 n y N9 C4 IDP sing 230 n y C8 N7 IDP doub 231 n y C8 H8 IDP sing 232 n n N7 C5 IDP sing 233 n y C5 C6 IDP sing 234 n n C5 C4 IDP doub 235 n y C6 O6 IDP doub 236 n n C6 N1 IDP sing 237 n n N1 C2 IDP sing 238 n n N1 HN1 IDP sing 239 n n C2 N3 IDP doub 240 n n C2 H2 IDP sing 241 n n N3 C4 IDP sing 242 n n # _atom_sites.entry_id 7EM4 _atom_sites.fract_transf_matrix[1][1] 0.009148 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IDP A 1 501 501 IDP IDP . D 3 CZU A 1 502 502 CZU CZU . E 2 IDP B 1 501 501 IDP IDP . F 4 HOH A 1 601 601 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB IDP . . . E 2 31.178 4.059 -29.915 1 149.39 ? PB IDP 501 B 1 HETATM 2 O O1B IDP . . . E 2 32.563 3.882 -30.73 1 151.19 ? O1B IDP 501 B 1 HETATM 3 O O2B IDP . . . E 2 30.449 5.287 -30.327 1 147.72 ? O2B IDP 501 B 1 HETATM 4 O O3B IDP . . . E 2 30.332 2.699 -30.259 1 148.45 ? O3B IDP 501 B 1 HETATM 5 P PA IDP . . . E 2 30.731 3.524 -27.098 1 143.44 ? PA IDP 501 B 1 HETATM 6 O O1A IDP . . . E 2 29.59 2.533 -27.75 1 145.15 ? O1A IDP 501 B 1 HETATM 7 O O2A IDP . . . E 2 30.133 4.649 -26.338 1 141.02 ? O2A IDP 501 B 1 HETATM 8 O O3A IDP . . . E 2 31.647 4.051 -28.357 1 146.63 ? O3A IDP 501 B 1 HETATM 9 O O5' IDP . . . E 2 31.713 2.609 -26.183 1 136.14 ? O5' IDP 501 B 1 HETATM 10 C C5' IDP . . . E 2 33.12 2.516 -26.471 1 132.33 ? C5' IDP 501 B 1 HETATM 11 C C4' IDP . . . E 2 33.84 1.503 -25.54 1 132.86 ? C4' IDP 501 B 1 HETATM 12 O O4' IDP . . . E 2 34.69 2.125 -24.505 1 131.45 ? O4' IDP 501 B 1 HETATM 13 C C3' IDP . . . E 2 32.865 0.635 -24.739 1 132.48 ? C3' IDP 501 B 1 HETATM 14 O O3' IDP . . . E 2 32.285 -0.416 -25.545 1 130.67 ? O3' IDP 501 B 1 HETATM 15 C C2' IDP . . . E 2 33.825 0.094 -23.711 1 130.95 ? C2' IDP 501 B 1 HETATM 16 O O2' IDP . . . E 2 34.834 -0.67 -24.372 1 133.6 ? O2' IDP 501 B 1 HETATM 17 C C1' IDP . . . E 2 34.426 1.414 -23.237 1 128.57 ? C1' IDP 501 B 1 HETATM 18 N N9 IDP . . . E 2 33.528 2.233 -22.324 1 123.28 ? N9 IDP 501 B 1 HETATM 19 C C8 IDP . . . E 2 32.478 2.997 -22.636 1 122.65 ? C8 IDP 501 B 1 HETATM 20 N N7 IDP . . . E 2 31.992 3.543 -21.53 1 122.71 ? N7 IDP 501 B 1 HETATM 21 C C5 IDP . . . E 2 32.743 3.138 -20.51 1 122.53 ? C5 IDP 501 B 1 HETATM 22 C C6 IDP . . . E 2 32.675 3.405 -19.199 1 117.57 ? C6 IDP 501 B 1 HETATM 23 O O6 IDP . . . E 2 31.797 4.143 -18.743 1 110.49 ? O6 IDP 501 B 1 HETATM 24 N N1 IDP . . . E 2 33.612 2.829 -18.327 1 119.85 ? N1 IDP 501 B 1 HETATM 25 C C2 IDP . . . E 2 34.552 2.033 -18.801 1 121.43 ? C2 IDP 501 B 1 HETATM 26 N N3 IDP . . . E 2 34.598 1.775 -20.18 1 124.56 ? N3 IDP 501 B 1 HETATM 27 C C4 IDP . . . E 2 33.692 2.328 -21.003 1 123.23 ? C4 IDP 501 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #