data_7EM6 # _model_server_result.job_id 4hnoZWLJAsgT-90KCdTRvQ _model_server_result.datetime_utc '2024-11-13 09:46:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7em6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7EM6 # _exptl.entry_id 7EM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 428.186 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "INOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EM6 _cell.length_a 109.079 _cell.length_b 186.438 _cell.length_c 106.326 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H14 N4 O11 P2' _chem_comp.formula_weight 428.186 _chem_comp.id IDP _chem_comp.mon_nstd_flag . _chem_comp.name "INOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B IDP doub 198 n n PB O2B IDP sing 199 n n PB O3B IDP sing 200 n n PB O3A IDP sing 201 n n O2B HOB2 IDP sing 202 n n O3B HOB3 IDP sing 203 n n PA O1A IDP doub 204 n n PA O2A IDP sing 205 n n PA O3A IDP sing 206 n n PA O5' IDP sing 207 n n O2A HOA2 IDP sing 208 n n O5' C5' IDP sing 209 n n C5' C4' IDP sing 210 n n C5' "H5'1" IDP sing 211 n n C5' "H5'2" IDP sing 212 n n C4' O4' IDP sing 213 n n C4' C3' IDP sing 214 n n C4' H4' IDP sing 215 n n O4' C1' IDP sing 216 n n C3' O3' IDP sing 217 n n C3' C2' IDP sing 218 n n C3' H3' IDP sing 219 n n O3' HO3' IDP sing 220 n n C2' O2' IDP sing 221 n n C2' C1' IDP sing 222 n n C2' H2' IDP sing 223 n n O2' HO2' IDP sing 224 n n C1' N9 IDP sing 225 n n C1' H1' IDP sing 226 n n N9 C8 IDP sing 227 n y N9 C4 IDP sing 228 n y C8 N7 IDP doub 229 n y C8 H8 IDP sing 230 n n N7 C5 IDP sing 231 n y C5 C6 IDP sing 232 n n C5 C4 IDP doub 233 n y C6 O6 IDP doub 234 n n C6 N1 IDP sing 235 n n N1 C2 IDP sing 236 n n N1 HN1 IDP sing 237 n n C2 N3 IDP doub 238 n n C2 H2 IDP sing 239 n n N3 C4 IDP sing 240 n n # _atom_sites.entry_id 7EM6 _atom_sites.fract_transf_matrix[1][1] 0.009168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009405 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IDP A 1 501 501 IDP IDP . D 3 CZU A 1 502 502 CZU CZU . E 2 IDP B 1 501 501 IDP IDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB IDP . . . E 2 30.9 4.117 -30.023 1 148.56 ? PB IDP 501 B 1 HETATM 2 O O1B IDP . . . E 2 32.177 3.844 -30.974 1 154.21 ? O1B IDP 501 B 1 HETATM 3 O O2B IDP . . . E 2 30.187 5.362 -30.41 1 145.22 ? O2B IDP 501 B 1 HETATM 4 O O3B IDP . . . E 2 29.966 2.766 -30.209 1 149.87 ? O3B IDP 501 B 1 HETATM 5 P PA IDP . . . E 2 30.71 3.719 -27.194 1 129.02 ? PA IDP 501 B 1 HETATM 6 O O1A IDP . . . E 2 29.5 2.716 -27.698 1 132.88 ? O1A IDP 501 B 1 HETATM 7 O O2A IDP . . . E 2 30.183 4.885 -26.452 1 126.94 ? O2A IDP 501 B 1 HETATM 8 O O3A IDP . . . E 2 31.541 4.166 -28.536 1 135.47 ? O3A IDP 501 B 1 HETATM 9 O O5' IDP . . . E 2 31.736 2.86 -26.287 1 113.28 ? O5' IDP 501 B 1 HETATM 10 C C5' IDP . . . E 2 33.09 2.62 -26.696 1 111.65 ? C5' IDP 501 B 1 HETATM 11 C C4' IDP . . . E 2 33.85 1.794 -25.632 1 117.59 ? C4' IDP 501 B 1 HETATM 12 O O4' IDP . . . E 2 34.473 2.626 -24.606 1 123.4 ? O4' IDP 501 B 1 HETATM 13 C C3' IDP . . . E 2 32.924 0.915 -24.8 1 120.52 ? C3' IDP 501 B 1 HETATM 14 O O3' IDP . . . E 2 32.445 -0.218 -25.547 1 120.83 ? O3' IDP 501 B 1 HETATM 15 C C2' IDP . . . E 2 33.922 0.506 -23.746 1 117.81 ? C2' IDP 501 B 1 HETATM 16 O O2' IDP . . . E 2 34.996 -0.145 -24.387 1 120.3 ? O2' IDP 501 B 1 HETATM 17 C C1' IDP . . . E 2 34.409 1.883 -23.317 1 118.37 ? C1' IDP 501 B 1 HETATM 18 N N9 IDP . . . E 2 33.514 2.562 -22.284 1 112.72 ? N9 IDP 501 B 1 HETATM 19 C C8 IDP . . . E 2 32.379 3.22 -22.528 1 111.88 ? C8 IDP 501 B 1 HETATM 20 N N7 IDP . . . E 2 31.89 3.665 -21.38 1 111.77 ? N7 IDP 501 B 1 HETATM 21 C C5 IDP . . . E 2 32.716 3.299 -20.406 1 112.37 ? C5 IDP 501 B 1 HETATM 22 C C6 IDP . . . E 2 32.661 3.509 -19.087 1 115.46 ? C6 IDP 501 B 1 HETATM 23 O O6 IDP . . . E 2 31.726 4.145 -18.59 1 111.03 ? O6 IDP 501 B 1 HETATM 24 N N1 IDP . . . E 2 33.677 3 -18.257 1 117.37 ? N1 IDP 501 B 1 HETATM 25 C C2 IDP . . . E 2 34.676 2.326 -18.794 1 117.96 ? C2 IDP 501 B 1 HETATM 26 N N3 IDP . . . E 2 34.699 2.132 -20.184 1 117.85 ? N3 IDP 501 B 1 HETATM 27 C C4 IDP . . . E 2 33.719 2.616 -20.962 1 112.59 ? C4 IDP 501 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #