data_7EMG # _model_server_result.job_id V7NT9ujyc2boF450OrQ_Tg _model_server_result.datetime_utc '2025-07-04 20:54:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7emg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 7EMG # _exptl.entry_id 7EMG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EMG _cell.length_a 63.841 _cell.length_b 120.299 _cell.length_c 120.664 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 246 n n PA O2A NDP sing 247 n n PA O5B NDP sing 248 n n PA O3 NDP sing 249 n n O2A HOA2 NDP sing 250 n n O5B C5B NDP sing 251 n n C5B C4B NDP sing 252 n n C5B H51A NDP sing 253 n n C5B H52A NDP sing 254 n n C4B O4B NDP sing 255 n n C4B C3B NDP sing 256 n n C4B H4B NDP sing 257 n n O4B C1B NDP sing 258 n n C3B O3B NDP sing 259 n n C3B C2B NDP sing 260 n n C3B H3B NDP sing 261 n n O3B HO3A NDP sing 262 n n C2B O2B NDP sing 263 n n C2B C1B NDP sing 264 n n C2B H2B NDP sing 265 n n O2B P2B NDP sing 266 n n C1B N9A NDP sing 267 n n C1B H1B NDP sing 268 n n N9A C8A NDP sing 269 n y N9A C4A NDP sing 270 n y C8A N7A NDP doub 271 n y C8A H8A NDP sing 272 n n N7A C5A NDP sing 273 n y C5A C6A NDP sing 274 n y C5A C4A NDP doub 275 n y C6A N6A NDP sing 276 n n C6A N1A NDP doub 277 n y N6A H61A NDP sing 278 n n N6A H62A NDP sing 279 n n N1A C2A NDP sing 280 n y C2A N3A NDP doub 281 n y C2A H2A NDP sing 282 n n N3A C4A NDP sing 283 n y O3 PN NDP sing 284 n n PN O1N NDP doub 285 n n PN O2N NDP sing 286 n n PN O5D NDP sing 287 n n O2N H21N NDP sing 288 n n O5D C5D NDP sing 289 n n C5D C4D NDP sing 290 n n C5D H51N NDP sing 291 n n C5D H52N NDP sing 292 n n C4D O4D NDP sing 293 n n C4D C3D NDP sing 294 n n C4D H4D NDP sing 295 n n O4D C1D NDP sing 296 n n C3D O3D NDP sing 297 n n C3D C2D NDP sing 298 n n C3D H3D NDP sing 299 n n O3D HO3N NDP sing 300 n n C2D O2D NDP sing 301 n n C2D C1D NDP sing 302 n n C2D H2D NDP sing 303 n n O2D HO2N NDP sing 304 n n C1D N1N NDP sing 305 n n C1D H1D NDP sing 306 n n N1N C2N NDP sing 307 n n N1N C6N NDP sing 308 n n C2N C3N NDP doub 309 n n C2N H2N NDP sing 310 n n C3N C7N NDP sing 311 n n C3N C4N NDP sing 312 n n C7N O7N NDP doub 313 n n C7N N7N NDP sing 314 n n N7N H71N NDP sing 315 n n N7N H72N NDP sing 316 n n C4N C5N NDP sing 317 n n C4N H41N NDP sing 318 n n C4N H42N NDP sing 319 n n C5N C6N NDP doub 320 n n C5N H5N NDP sing 321 n n C6N H6N NDP sing 322 n n P2B O1X NDP doub 323 n n P2B O2X NDP sing 324 n n P2B O3X NDP sing 325 n n O2X HOP2 NDP sing 326 n n O3X HOP3 NDP sing 327 n n # _atom_sites.entry_id 7EMG _atom_sites.fract_transf_matrix[1][1] 0.015664 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 301 245 NDP NDP . D 3 EDO A 1 302 1 EDO EDO . E 2 NDP B 1 301 245 NDP NDP . F 4 HOH A 1 401 48 HOH HOH . F 4 HOH A 2 402 16 HOH HOH . F 4 HOH A 3 403 3 HOH HOH . F 4 HOH A 4 404 14 HOH HOH . F 4 HOH A 5 405 25 HOH HOH . F 4 HOH A 6 406 13 HOH HOH . F 4 HOH A 7 407 54 HOH HOH . F 4 HOH A 8 408 7 HOH HOH . F 4 HOH A 9 409 30 HOH HOH . F 4 HOH A 10 410 29 HOH HOH . F 4 HOH A 11 411 12 HOH HOH . F 4 HOH A 12 412 56 HOH HOH . F 4 HOH A 13 413 41 HOH HOH . F 4 HOH A 14 414 20 HOH HOH . F 4 HOH A 15 415 24 HOH HOH . F 4 HOH A 16 416 22 HOH HOH . F 4 HOH A 17 417 58 HOH HOH . F 4 HOH A 18 418 2 HOH HOH . F 4 HOH A 19 419 45 HOH HOH . F 4 HOH A 20 420 50 HOH HOH . F 4 HOH A 21 421 5 HOH HOH . F 4 HOH A 22 422 27 HOH HOH . F 4 HOH A 23 423 17 HOH HOH . F 4 HOH A 24 424 35 HOH HOH . F 4 HOH A 25 425 38 HOH HOH . F 4 HOH A 26 426 57 HOH HOH . F 4 HOH A 27 427 59 HOH HOH . G 4 HOH B 1 401 60 HOH HOH . G 4 HOH B 2 402 23 HOH HOH . G 4 HOH B 3 403 46 HOH HOH . G 4 HOH B 4 404 53 HOH HOH . G 4 HOH B 5 405 15 HOH HOH . G 4 HOH B 6 406 11 HOH HOH . G 4 HOH B 7 407 37 HOH HOH . G 4 HOH B 8 408 1 HOH HOH . G 4 HOH B 9 409 49 HOH HOH . G 4 HOH B 10 410 21 HOH HOH . G 4 HOH B 11 411 4 HOH HOH . G 4 HOH B 12 412 40 HOH HOH . G 4 HOH B 13 413 34 HOH HOH . G 4 HOH B 14 414 6 HOH HOH . G 4 HOH B 15 415 26 HOH HOH . G 4 HOH B 16 416 19 HOH HOH . G 4 HOH B 17 417 32 HOH HOH . G 4 HOH B 18 418 9 HOH HOH . G 4 HOH B 19 419 36 HOH HOH . G 4 HOH B 20 420 31 HOH HOH . G 4 HOH B 21 421 39 HOH HOH . G 4 HOH B 22 422 43 HOH HOH . G 4 HOH B 23 423 18 HOH HOH . G 4 HOH B 24 424 42 HOH HOH . G 4 HOH B 25 425 51 HOH HOH . G 4 HOH B 26 426 33 HOH HOH . G 4 HOH B 27 427 55 HOH HOH . G 4 HOH B 28 428 8 HOH HOH . G 4 HOH B 29 429 52 HOH HOH . G 4 HOH B 30 430 44 HOH HOH . G 4 HOH B 31 431 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . E 2 -6.715 11.769 -5.96 1 70.16 ? PA NDP 301 B 1 HETATM 2 O O1A NDP . . . E 2 -7.29 11.664 -4.589 1 61.17 -1 O1A NDP 301 B 1 HETATM 3 O O2A NDP . . . E 2 -5.948 10.638 -6.581 1 67.46 ? O2A NDP 301 B 1 HETATM 4 O O5B NDP . . . E 2 -7.894 12.256 -6.991 1 53.48 ? O5B NDP 301 B 1 HETATM 5 C C5B NDP . . . E 2 -7.266 13.224 -7.772 1 52.25 ? C5B NDP 301 B 1 HETATM 6 C C4B NDP . . . E 2 -8.322 14.041 -8.462 1 46.13 ? C4B NDP 301 B 1 HETATM 7 O O4B NDP . . . E 2 -9.424 13.196 -8.794 1 47.42 ? O4B NDP 301 B 1 HETATM 8 C C3B NDP . . . E 2 -8.785 15.137 -7.472 1 51.62 ? C3B NDP 301 B 1 HETATM 9 O O3B NDP . . . E 2 -9.16 16.282 -8.166 1 45.85 ? O3B NDP 301 B 1 HETATM 10 C C2B NDP . . . E 2 -10.042 14.489 -6.89 1 48.09 ? C2B NDP 301 B 1 HETATM 11 O O2B NDP . . . E 2 -10.961 15.357 -6.464 1 43.12 ? O2B NDP 301 B 1 HETATM 12 C C1B NDP . . . E 2 -10.568 13.761 -8.166 1 45.09 ? C1B NDP 301 B 1 HETATM 13 N N9A NDP . . . E 2 -11.463 12.692 -7.759 1 40.92 ? N9A NDP 301 B 1 HETATM 14 C C8A NDP . . . E 2 -11.145 11.537 -7.04 1 43.11 ? C8A NDP 301 B 1 HETATM 15 N N7A NDP . . . E 2 -12.208 10.745 -6.799 1 44.83 ? N7A NDP 301 B 1 HETATM 16 C C5A NDP . . . E 2 -13.276 11.437 -7.386 1 36.32 ? C5A NDP 301 B 1 HETATM 17 C C6A NDP . . . E 2 -14.642 11.142 -7.477 1 36.02 ? C6A NDP 301 B 1 HETATM 18 N N6A NDP . . . E 2 -15.133 9.98 -6.921 1 34.54 ? N6A NDP 301 B 1 HETATM 19 N N1A NDP . . . E 2 -15.516 11.985 -8.107 1 37.48 ? N1A NDP 301 B 1 HETATM 20 C C2A NDP . . . E 2 -14.943 13.122 -8.637 1 40.66 ? C2A NDP 301 B 1 HETATM 21 N N3A NDP . . . E 2 -13.666 13.545 -8.633 1 41.28 ? N3A NDP 301 B 1 HETATM 22 C C4A NDP . . . E 2 -12.828 12.658 -7.988 1 39.01 ? C4A NDP 301 B 1 HETATM 23 O O3 NDP . . . E 2 -5.656 13.019 -5.766 1 86.04 ? O3 NDP 301 B 1 HETATM 24 P PN NDP . . . E 2 -4.646 12.663 -4.591 1 91.44 ? PN NDP 301 B 1 HETATM 25 O O1N NDP . . . E 2 -5.149 13.263 -3.338 1 80.61 -1 O1N NDP 301 B 1 HETATM 26 O O2N NDP . . . E 2 -4.056 11.272 -4.674 1 86.51 ? O2N NDP 301 B 1 HETATM 27 O O5D NDP . . . E 2 -3.202 13.636 -4.846 1 83.33 -1 O5D NDP 301 B 1 HETATM 28 P P2B NDP . . . E 2 -10.304 16.446 -5.157 1 41.71 ? P2B NDP 301 B 1 HETATM 29 O O1X NDP . . . E 2 -10.092 17.643 -6.031 1 53.07 -1 O1X NDP 301 B 1 HETATM 30 O O2X NDP . . . E 2 -9.063 15.692 -4.669 1 51.97 -1 O2X NDP 301 B 1 HETATM 31 O O3X NDP . . . E 2 -11.509 16.447 -4.26 1 40.17 ? O3X NDP 301 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #