data_7EMR # _model_server_result.job_id m6iyH9Dl9fsII8nC1xH5Bw _model_server_result.datetime_utc '2024-11-08 15:02:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7emr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":203}' # _entry.id 7EMR # _exptl.entry_id 7EMR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EMR _cell.length_a 85.06 _cell.length_b 85.06 _cell.length_c 84.087 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EMR _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,S 1 1 B,I,J,K,L,M,N,T 2 1 C,O,P,Q,R,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 M N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 32 A HIS 32 1_555 D CO J83 . A J83 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc2 A OH TYR 75 A TYR 75 1_555 D CO J83 . A J83 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc3 B NE2 HIS 32 B HIS 32 1_555 I CO J83 . B J83 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc4 B OH TYR 75 B TYR 75 1_555 I CO J83 . B J83 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc5 C NE2 HIS 32 C HIS 32 1_555 O CO J83 . C J83 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc6 C OH TYR 75 C TYR 75 1_555 O CO J83 . C J83 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 149 n n C1 C2 GOL sing 150 n n C1 H11 GOL sing 151 n n C1 H12 GOL sing 152 n n O1 HO1 GOL sing 153 n n C2 O2 GOL sing 154 n n C2 C3 GOL sing 155 n n C2 H2 GOL sing 156 n n O2 HO2 GOL sing 157 n n C3 O3 GOL sing 158 n n C3 H31 GOL sing 159 n n C3 H32 GOL sing 160 n n O3 HO3 GOL sing 161 n n # _atom_sites.entry_id 7EMR _atom_sites.fract_transf_matrix[1][1] 0.011756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011892 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 J83 A 1 201 201 J83 MQV . E 3 NHE A 1 202 301 NHE NHE . F 4 GOL A 1 203 401 GOL GOL . G 5 PO4 A 1 204 501 PO4 PO4 . H 5 PO4 A 1 205 502 PO4 PO4 . I 2 J83 B 1 201 201 J83 MQV . J 6 CXS B 1 202 301 CXS CXS . K 6 CXS B 1 203 302 CXS CXS . L 6 CXS B 1 204 303 CXS CXS . M 4 GOL B 1 205 401 GOL GOL . N 5 PO4 B 1 206 501 PO4 PO4 . O 2 J83 C 1 201 201 J83 MQV . P 4 GOL C 1 202 401 GOL GOL . Q 5 PO4 C 1 203 501 PO4 PO4 . R 5 PO4 C 1 204 502 PO4 PO4 . S 7 HOH A 1 301 27 HOH HOH . S 7 HOH A 2 302 50 HOH HOH . S 7 HOH A 3 303 315 HOH HOH . S 7 HOH A 4 304 242 HOH HOH . S 7 HOH A 5 305 374 HOH HOH . S 7 HOH A 6 306 69 HOH HOH . S 7 HOH A 7 307 119 HOH HOH . S 7 HOH A 8 308 156 HOH HOH . S 7 HOH A 9 309 384 HOH HOH . S 7 HOH A 10 310 12 HOH HOH . S 7 HOH A 11 311 131 HOH HOH . S 7 HOH A 12 312 106 HOH HOH . S 7 HOH A 13 313 121 HOH HOH . S 7 HOH A 14 314 138 HOH HOH . S 7 HOH A 15 315 33 HOH HOH . S 7 HOH A 16 316 13 HOH HOH . S 7 HOH A 17 317 307 HOH HOH . S 7 HOH A 18 318 193 HOH HOH . S 7 HOH A 19 319 92 HOH HOH . S 7 HOH A 20 320 65 HOH HOH . S 7 HOH A 21 321 77 HOH HOH . S 7 HOH A 22 322 78 HOH HOH . S 7 HOH A 23 323 25 HOH HOH . S 7 HOH A 24 324 99 HOH HOH . S 7 HOH A 25 325 160 HOH HOH . S 7 HOH A 26 326 320 HOH HOH . S 7 HOH A 27 327 18 HOH HOH . S 7 HOH A 28 328 11 HOH HOH . S 7 HOH A 29 329 75 HOH HOH . S 7 HOH A 30 330 310 HOH HOH . S 7 HOH A 31 331 1 HOH HOH . S 7 HOH A 32 332 239 HOH HOH . S 7 HOH A 33 333 132 HOH HOH . S 7 HOH A 34 334 64 HOH HOH . S 7 HOH A 35 335 35 HOH HOH . S 7 HOH A 36 336 205 HOH HOH . S 7 HOH A 37 337 231 HOH HOH . S 7 HOH A 38 338 129 HOH HOH . S 7 HOH A 39 339 190 HOH HOH . S 7 HOH A 40 340 192 HOH HOH . S 7 HOH A 41 341 104 HOH HOH . S 7 HOH A 42 342 349 HOH HOH . S 7 HOH A 43 343 373 HOH HOH . S 7 HOH A 44 344 60 HOH HOH . S 7 HOH A 45 345 45 HOH HOH . S 7 HOH A 46 346 369 HOH HOH . S 7 HOH A 47 347 215 HOH HOH . S 7 HOH A 48 348 70 HOH HOH . S 7 HOH A 49 349 176 HOH HOH . S 7 HOH A 50 350 42 HOH HOH . S 7 HOH A 51 351 245 HOH HOH . S 7 HOH A 52 352 137 HOH HOH . S 7 HOH A 53 353 107 HOH HOH . S 7 HOH A 54 354 26 HOH HOH . S 7 HOH A 55 355 15 HOH HOH . S 7 HOH A 56 356 375 HOH HOH . S 7 HOH A 57 357 143 HOH HOH . S 7 HOH A 58 358 58 HOH HOH . S 7 HOH A 59 359 136 HOH HOH . S 7 HOH A 60 360 113 HOH HOH . S 7 HOH A 61 361 29 HOH HOH . S 7 HOH A 62 362 149 HOH HOH . S 7 HOH A 63 363 265 HOH HOH . S 7 HOH A 64 364 289 HOH HOH . S 7 HOH A 65 365 157 HOH HOH . S 7 HOH A 66 366 49 HOH HOH . S 7 HOH A 67 367 6 HOH HOH . S 7 HOH A 68 368 233 HOH HOH . S 7 HOH A 69 369 82 HOH HOH . S 7 HOH A 70 370 370 HOH HOH . S 7 HOH A 71 371 269 HOH HOH . S 7 HOH A 72 372 84 HOH HOH . S 7 HOH A 73 373 148 HOH HOH . S 7 HOH A 74 374 93 HOH HOH . S 7 HOH A 75 375 232 HOH HOH . S 7 HOH A 76 376 247 HOH HOH . S 7 HOH A 77 377 241 HOH HOH . S 7 HOH A 78 378 139 HOH HOH . S 7 HOH A 79 379 209 HOH HOH . S 7 HOH A 80 380 385 HOH HOH . S 7 HOH A 81 381 85 HOH HOH . S 7 HOH A 82 382 51 HOH HOH . S 7 HOH A 83 383 181 HOH HOH . S 7 HOH A 84 384 134 HOH HOH . S 7 HOH A 85 385 61 HOH HOH . S 7 HOH A 86 386 66 HOH HOH . S 7 HOH A 87 387 189 HOH HOH . S 7 HOH A 88 388 272 HOH HOH . S 7 HOH A 89 389 73 HOH HOH . S 7 HOH A 90 390 191 HOH HOH . S 7 HOH A 91 391 204 HOH HOH . S 7 HOH A 92 392 207 HOH HOH . S 7 HOH A 93 393 222 HOH HOH . S 7 HOH A 94 394 210 HOH HOH . T 7 HOH B 1 301 41 HOH HOH . T 7 HOH B 2 302 386 HOH HOH . T 7 HOH B 3 303 182 HOH HOH . T 7 HOH B 4 304 146 HOH HOH . T 7 HOH B 5 305 14 HOH HOH . T 7 HOH B 6 306 95 HOH HOH . T 7 HOH B 7 307 105 HOH HOH . T 7 HOH B 8 308 174 HOH HOH . T 7 HOH B 9 309 54 HOH HOH . T 7 HOH B 10 310 302 HOH HOH . T 7 HOH B 11 311 101 HOH HOH . T 7 HOH B 12 312 288 HOH HOH . T 7 HOH B 13 313 135 HOH HOH . T 7 HOH B 14 314 168 HOH HOH . T 7 HOH B 15 315 38 HOH HOH . T 7 HOH B 16 316 123 HOH HOH . T 7 HOH B 17 317 44 HOH HOH . T 7 HOH B 18 318 72 HOH HOH . T 7 HOH B 19 319 76 HOH HOH . T 7 HOH B 20 320 169 HOH HOH . T 7 HOH B 21 321 206 HOH HOH . T 7 HOH B 22 322 198 HOH HOH . T 7 HOH B 23 323 5 HOH HOH . T 7 HOH B 24 324 284 HOH HOH . T 7 HOH B 25 325 80 HOH HOH . T 7 HOH B 26 326 145 HOH HOH . T 7 HOH B 27 327 24 HOH HOH . T 7 HOH B 28 328 40 HOH HOH . T 7 HOH B 29 329 294 HOH HOH . T 7 HOH B 30 330 341 HOH HOH . T 7 HOH B 31 331 179 HOH HOH . T 7 HOH B 32 332 219 HOH HOH . T 7 HOH B 33 333 32 HOH HOH . T 7 HOH B 34 334 4 HOH HOH . T 7 HOH B 35 335 243 HOH HOH . T 7 HOH B 36 336 167 HOH HOH . T 7 HOH B 37 337 236 HOH HOH . T 7 HOH B 38 338 94 HOH HOH . T 7 HOH B 39 339 8 HOH HOH . T 7 HOH B 40 340 133 HOH HOH . T 7 HOH B 41 341 20 HOH HOH . T 7 HOH B 42 342 16 HOH HOH . T 7 HOH B 43 343 22 HOH HOH . T 7 HOH B 44 344 202 HOH HOH . T 7 HOH B 45 345 120 HOH HOH . T 7 HOH B 46 346 59 HOH HOH . T 7 HOH B 47 347 154 HOH HOH . T 7 HOH B 48 348 296 HOH HOH . T 7 HOH B 49 349 126 HOH HOH . T 7 HOH B 50 350 116 HOH HOH . T 7 HOH B 51 351 9 HOH HOH . T 7 HOH B 52 352 142 HOH HOH . T 7 HOH B 53 353 2 HOH HOH . T 7 HOH B 54 354 115 HOH HOH . T 7 HOH B 55 355 112 HOH HOH . T 7 HOH B 56 356 158 HOH HOH . T 7 HOH B 57 357 244 HOH HOH . T 7 HOH B 58 358 114 HOH HOH . T 7 HOH B 59 359 10 HOH HOH . T 7 HOH B 60 360 151 HOH HOH . T 7 HOH B 61 361 55 HOH HOH . T 7 HOH B 62 362 3 HOH HOH . T 7 HOH B 63 363 128 HOH HOH . T 7 HOH B 64 364 376 HOH HOH . T 7 HOH B 65 365 147 HOH HOH . T 7 HOH B 66 366 130 HOH HOH . T 7 HOH B 67 367 377 HOH HOH . T 7 HOH B 68 368 19 HOH HOH . T 7 HOH B 69 369 39 HOH HOH . T 7 HOH B 70 370 90 HOH HOH . T 7 HOH B 71 371 259 HOH HOH . T 7 HOH B 72 372 381 HOH HOH . T 7 HOH B 73 373 46 HOH HOH . T 7 HOH B 74 374 53 HOH HOH . T 7 HOH B 75 375 382 HOH HOH . T 7 HOH B 76 376 122 HOH HOH . T 7 HOH B 77 377 110 HOH HOH . T 7 HOH B 78 378 36 HOH HOH . T 7 HOH B 79 379 68 HOH HOH . T 7 HOH B 80 380 34 HOH HOH . T 7 HOH B 81 381 83 HOH HOH . T 7 HOH B 82 382 293 HOH HOH . T 7 HOH B 83 383 234 HOH HOH . T 7 HOH B 84 384 277 HOH HOH . T 7 HOH B 85 385 62 HOH HOH . T 7 HOH B 86 386 270 HOH HOH . T 7 HOH B 87 387 380 HOH HOH . T 7 HOH B 88 388 211 HOH HOH . T 7 HOH B 89 389 368 HOH HOH . T 7 HOH B 90 390 306 HOH HOH . T 7 HOH B 91 391 124 HOH HOH . T 7 HOH B 92 392 326 HOH HOH . T 7 HOH B 93 393 371 HOH HOH . U 7 HOH C 1 301 63 HOH HOH . U 7 HOH C 2 302 47 HOH HOH . U 7 HOH C 3 303 125 HOH HOH . U 7 HOH C 4 304 383 HOH HOH . U 7 HOH C 5 305 74 HOH HOH . U 7 HOH C 6 306 86 HOH HOH . U 7 HOH C 7 307 246 HOH HOH . U 7 HOH C 8 308 108 HOH HOH . U 7 HOH C 9 309 43 HOH HOH . U 7 HOH C 10 310 218 HOH HOH . U 7 HOH C 11 311 180 HOH HOH . U 7 HOH C 12 312 91 HOH HOH . U 7 HOH C 13 313 150 HOH HOH . U 7 HOH C 14 314 256 HOH HOH . U 7 HOH C 15 315 102 HOH HOH . U 7 HOH C 16 316 155 HOH HOH . U 7 HOH C 17 317 177 HOH HOH . U 7 HOH C 18 318 260 HOH HOH . U 7 HOH C 19 319 161 HOH HOH . U 7 HOH C 20 320 378 HOH HOH . U 7 HOH C 21 321 81 HOH HOH . U 7 HOH C 22 322 52 HOH HOH . U 7 HOH C 23 323 186 HOH HOH . U 7 HOH C 24 324 88 HOH HOH . U 7 HOH C 25 325 166 HOH HOH . U 7 HOH C 26 326 56 HOH HOH . U 7 HOH C 27 327 317 HOH HOH . U 7 HOH C 28 328 30 HOH HOH . U 7 HOH C 29 329 31 HOH HOH . U 7 HOH C 30 330 197 HOH HOH . U 7 HOH C 31 331 172 HOH HOH . U 7 HOH C 32 332 7 HOH HOH . U 7 HOH C 33 333 214 HOH HOH . U 7 HOH C 34 334 118 HOH HOH . U 7 HOH C 35 335 203 HOH HOH . U 7 HOH C 36 336 21 HOH HOH . U 7 HOH C 37 337 37 HOH HOH . U 7 HOH C 38 338 87 HOH HOH . U 7 HOH C 39 339 79 HOH HOH . U 7 HOH C 40 340 325 HOH HOH . U 7 HOH C 41 341 23 HOH HOH . U 7 HOH C 42 342 89 HOH HOH . U 7 HOH C 43 343 67 HOH HOH . U 7 HOH C 44 344 163 HOH HOH . U 7 HOH C 45 345 229 HOH HOH . U 7 HOH C 46 346 17 HOH HOH . U 7 HOH C 47 347 228 HOH HOH . U 7 HOH C 48 348 178 HOH HOH . U 7 HOH C 49 349 96 HOH HOH . U 7 HOH C 50 350 48 HOH HOH . U 7 HOH C 51 351 173 HOH HOH . U 7 HOH C 52 352 224 HOH HOH . U 7 HOH C 53 353 199 HOH HOH . U 7 HOH C 54 354 71 HOH HOH . U 7 HOH C 55 355 117 HOH HOH . U 7 HOH C 56 356 153 HOH HOH . U 7 HOH C 57 357 111 HOH HOH . U 7 HOH C 58 358 196 HOH HOH . U 7 HOH C 59 359 140 HOH HOH . U 7 HOH C 60 360 141 HOH HOH . U 7 HOH C 61 361 201 HOH HOH . U 7 HOH C 62 362 57 HOH HOH . U 7 HOH C 63 363 28 HOH HOH . U 7 HOH C 64 364 97 HOH HOH . U 7 HOH C 65 365 184 HOH HOH . U 7 HOH C 66 366 165 HOH HOH . U 7 HOH C 67 367 100 HOH HOH . U 7 HOH C 68 368 372 HOH HOH . U 7 HOH C 69 369 109 HOH HOH . U 7 HOH C 70 370 379 HOH HOH . U 7 HOH C 71 371 279 HOH HOH . U 7 HOH C 72 372 187 HOH HOH . U 7 HOH C 73 373 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 1.251 33.512 -1.263 1 47.75 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . F 4 1.937 32.891 -2.344 1 50.84 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . F 4 1.723 32.968 0.066 1 46.09 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . F 4 0.695 32.123 0.586 1 40.84 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . F 4 2.111 34.037 1.074 1 46.02 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . F 4 2.543 35.255 0.46 1 42.36 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 6 #