data_7ENS # _model_server_result.job_id hlyS3cWx29zGnxtKsvfOAA _model_server_result.datetime_utc '2024-11-25 09:28:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ens # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7ENS # _exptl.entry_id 7ENS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7ENS _cell.length_a 61.752 _cell.length_b 61.752 _cell.length_c 334.653 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ENS _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_775 -y+2,-x+2,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 61.752 106.957601 55.7755 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O2G ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc2 B O2B ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 B O2A ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc4 C MG MG . A MG 402 1_555 E O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc5 C MG MG . A MG 402 1_555 E O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc6 C MG MG . A MG 402 1_555 E O HOH . A HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 106 n n PG O2G ATP sing 107 n n PG O3G ATP sing 108 n n PG O3B ATP sing 109 n n O2G HOG2 ATP sing 110 n n O3G HOG3 ATP sing 111 n n PB O1B ATP doub 112 n n PB O2B ATP sing 113 n n PB O3B ATP sing 114 n n PB O3A ATP sing 115 n n O2B HOB2 ATP sing 116 n n PA O1A ATP doub 117 n n PA O2A ATP sing 118 n n PA O3A ATP sing 119 n n PA O5' ATP sing 120 n n O2A HOA2 ATP sing 121 n n O5' C5' ATP sing 122 n n C5' C4' ATP sing 123 n n C5' "H5'1" ATP sing 124 n n C5' "H5'2" ATP sing 125 n n C4' O4' ATP sing 126 n n C4' C3' ATP sing 127 n n C4' H4' ATP sing 128 n n O4' C1' ATP sing 129 n n C3' O3' ATP sing 130 n n C3' C2' ATP sing 131 n n C3' H3' ATP sing 132 n n O3' HO3' ATP sing 133 n n C2' O2' ATP sing 134 n n C2' C1' ATP sing 135 n n C2' H2' ATP sing 136 n n O2' HO2' ATP sing 137 n n C1' N9 ATP sing 138 n n C1' H1' ATP sing 139 n n N9 C8 ATP sing 140 n y N9 C4 ATP sing 141 n y C8 N7 ATP doub 142 n y C8 H8 ATP sing 143 n n N7 C5 ATP sing 144 n y C5 C6 ATP sing 145 n y C5 C4 ATP doub 146 n y C6 N6 ATP sing 147 n n C6 N1 ATP doub 148 n y N6 HN61 ATP sing 149 n n N6 HN62 ATP sing 150 n n N1 C2 ATP sing 151 n y C2 N3 ATP doub 152 n y C2 H2 ATP sing 153 n n N3 C4 ATP sing 154 n y # _atom_sites.entry_id 7ENS _atom_sites.fract_transf_matrix[1][1] 0.016194 _atom_sites.fract_transf_matrix[1][2] 0.009349 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002988 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 401 4 ATP ATP . C 3 MG A 1 402 1 MG MG . D 4 5BX A 1 403 1 5BX 5BX . E 5 HOH A 1 501 6 HOH HOH . E 5 HOH A 2 502 23 HOH HOH . E 5 HOH A 3 503 20 HOH HOH . E 5 HOH A 4 504 45 HOH HOH . E 5 HOH A 5 505 36 HOH HOH . E 5 HOH A 6 506 67 HOH HOH . E 5 HOH A 7 507 59 HOH HOH . E 5 HOH A 8 508 10 HOH HOH . E 5 HOH A 9 509 62 HOH HOH . E 5 HOH A 10 510 7 HOH HOH . E 5 HOH A 11 511 22 HOH HOH . E 5 HOH A 12 512 9 HOH HOH . E 5 HOH A 13 513 64 HOH HOH . E 5 HOH A 14 514 5 HOH HOH . E 5 HOH A 15 515 2 HOH HOH . E 5 HOH A 16 516 4 HOH HOH . E 5 HOH A 17 517 15 HOH HOH . E 5 HOH A 18 518 55 HOH HOH . E 5 HOH A 19 519 47 HOH HOH . E 5 HOH A 20 520 16 HOH HOH . E 5 HOH A 21 521 24 HOH HOH . E 5 HOH A 22 522 33 HOH HOH . E 5 HOH A 23 523 27 HOH HOH . E 5 HOH A 24 524 28 HOH HOH . E 5 HOH A 25 525 3 HOH HOH . E 5 HOH A 26 526 17 HOH HOH . E 5 HOH A 27 527 14 HOH HOH . E 5 HOH A 28 528 1 HOH HOH . E 5 HOH A 29 529 35 HOH HOH . E 5 HOH A 30 530 8 HOH HOH . E 5 HOH A 31 531 13 HOH HOH . E 5 HOH A 32 532 66 HOH HOH . E 5 HOH A 33 533 51 HOH HOH . E 5 HOH A 34 534 42 HOH HOH . E 5 HOH A 35 535 12 HOH HOH . E 5 HOH A 36 536 25 HOH HOH . E 5 HOH A 37 537 18 HOH HOH . E 5 HOH A 38 538 50 HOH HOH . E 5 HOH A 39 539 41 HOH HOH . E 5 HOH A 40 540 29 HOH HOH . E 5 HOH A 41 541 44 HOH HOH . E 5 HOH A 42 542 38 HOH HOH . E 5 HOH A 43 543 52 HOH HOH . E 5 HOH A 44 544 32 HOH HOH . E 5 HOH A 45 545 30 HOH HOH . E 5 HOH A 46 546 39 HOH HOH . E 5 HOH A 47 547 65 HOH HOH . E 5 HOH A 48 548 11 HOH HOH . E 5 HOH A 49 549 34 HOH HOH . E 5 HOH A 50 550 40 HOH HOH . E 5 HOH A 51 551 21 HOH HOH . E 5 HOH A 52 552 48 HOH HOH . E 5 HOH A 53 553 19 HOH HOH . E 5 HOH A 54 554 46 HOH HOH . E 5 HOH A 55 555 61 HOH HOH . E 5 HOH A 56 556 63 HOH HOH . E 5 HOH A 57 557 43 HOH HOH . E 5 HOH A 58 558 56 HOH HOH . E 5 HOH A 59 559 72 HOH HOH . E 5 HOH A 60 560 54 HOH HOH . E 5 HOH A 61 561 58 HOH HOH . E 5 HOH A 62 562 70 HOH HOH . E 5 HOH A 63 563 57 HOH HOH . E 5 HOH A 64 564 53 HOH HOH . E 5 HOH A 65 565 37 HOH HOH . E 5 HOH A 66 566 26 HOH HOH . E 5 HOH A 67 567 68 HOH HOH . E 5 HOH A 68 568 71 HOH HOH . E 5 HOH A 69 569 49 HOH HOH . E 5 HOH A 70 570 31 HOH HOH . E 5 HOH A 71 571 60 HOH HOH . E 5 HOH A 72 572 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 8.846 45.109 19.215 1 56.01 ? PG ATP 401 A 1 HETATM 2 O O1G ATP . . . B 2 7.351 44.93 19.32 1 61.48 ? O1G ATP 401 A 1 HETATM 3 O O2G ATP . . . B 2 9.247 46.546 18.989 1 51.41 ? O2G ATP 401 A 1 HETATM 4 O O3G ATP . . . B 2 9.592 44.468 20.36 1 52.88 ? O3G ATP 401 A 1 HETATM 5 P PB ATP . . . B 2 9.389 44.732 16.346 1 48.49 ? PB ATP 401 A 1 HETATM 6 O O1B ATP . . . B 2 8.677 43.708 15.525 1 57.38 ? O1B ATP 401 A 1 HETATM 7 O O2B ATP . . . B 2 9.01 46.171 16.222 1 51.88 ? O2B ATP 401 A 1 HETATM 8 O O3B ATP . . . B 2 9.296 44.308 17.888 1 56.14 ? O3B ATP 401 A 1 HETATM 9 P PA ATP . . . B 2 12.185 45.616 16.266 1 51.08 ? PA ATP 401 A 1 HETATM 10 O O1A ATP . . . B 2 13.331 44.89 16.89 1 40.04 ? O1A ATP 401 A 1 HETATM 11 O O2A ATP . . . B 2 11.683 46.853 16.935 1 45.46 ? O2A ATP 401 A 1 HETATM 12 O O3A ATP . . . B 2 10.963 44.593 16.089 1 51.06 ? O3A ATP 401 A 1 HETATM 13 O O5' ATP . . . B 2 12.534 45.943 14.735 1 47.86 ? O5' ATP 401 A 1 HETATM 14 C C5' ATP . . . B 2 13.529 45.132 14.062 1 47.92 ? C5' ATP 401 A 1 HETATM 15 C C4' ATP . . . B 2 13.445 45.367 12.574 1 52.78 ? C4' ATP 401 A 1 HETATM 16 O O4' ATP . . . B 2 12.247 44.731 12.058 1 54.83 ? O4' ATP 401 A 1 HETATM 17 C C3' ATP . . . B 2 13.367 46.834 12.127 1 49.93 ? C3' ATP 401 A 1 HETATM 18 O O3' ATP . . . B 2 14.135 47.056 10.951 1 43.02 ? O3' ATP 401 A 1 HETATM 19 C C2' ATP . . . B 2 11.872 47.032 11.866 1 55.57 ? C2' ATP 401 A 1 HETATM 20 O O2' ATP . . . B 2 11.61 48.057 10.932 1 51.8 ? O2' ATP 401 A 1 HETATM 21 C C1' ATP . . . B 2 11.488 45.661 11.321 1 55.22 ? C1' ATP 401 A 1 HETATM 22 N N9 ATP . . . B 2 10.077 45.334 11.487 1 53.37 ? N9 ATP 401 A 1 HETATM 23 C C8 ATP . . . B 2 9.364 45.255 12.659 1 55.65 ? C8 ATP 401 A 1 HETATM 24 N N7 ATP . . . B 2 8.105 44.936 12.462 1 57.06 ? N7 ATP 401 A 1 HETATM 25 C C5 ATP . . . B 2 7.987 44.8 11.084 1 54.26 ? C5 ATP 401 A 1 HETATM 26 C C6 ATP . . . B 2 6.902 44.473 10.247 1 56.29 ? C6 ATP 401 A 1 HETATM 27 N N6 ATP . . . B 2 5.676 44.213 10.692 1 57.26 ? N6 ATP 401 A 1 HETATM 28 N N1 ATP . . . B 2 7.138 44.426 8.914 1 54.69 ? N1 ATP 401 A 1 HETATM 29 C C2 ATP . . . B 2 8.375 44.689 8.472 1 51.79 ? C2 ATP 401 A 1 HETATM 30 N N3 ATP . . . B 2 9.467 45.005 9.162 1 53.88 ? N3 ATP 401 A 1 HETATM 31 C C4 ATP . . . B 2 9.2 45.044 10.477 1 53.38 ? C4 ATP 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #