data_7ENS
#
_model_server_result.job_id            S_vmKFqjqu92MwISTteyUQ 
_model_server_result.datetime_utc      '2024-11-02 09:26:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ens 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    7ENS 
#
_exptl.entry_id    7ENS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              257.288 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5S)-5-[(1R)-1-(1H-indol-3-yl)ethyl]-2-(methylamino)-1,3-oxazol-4(5H)-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7ENS 
_cell.length_a            61.752 
_cell.length_b            61.752 
_cell.length_c            334.653 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ENS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    'P 65 2 (x,y,z+1/12)' 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_775 -y+2,-x+2,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 61.752 106.957601 55.7755 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O2G ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc2 B O2B ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc3 B O2A ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc4 C MG MG . A MG 402 1_555 E O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc5 C MG MG . A MG 402 1_555 E O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc6 C MG MG . A MG 402 1_555 E O HOH . A HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
#
_chem_comp.formula           'C14 H15 N3 O2' 
_chem_comp.formula_weight    257.288 
_chem_comp.id                5BX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5S)-5-[(1R)-1-(1H-indol-3-yl)ethyl]-2-(methylamino)-1,3-oxazol-4(5H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Indolemycin;Indolmycin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O06 C05 5BX doub 1 n n 
C10 C09 5BX sing 2 n n 
C05 N04 5BX sing 3 n n 
C05 C07 5BX sing 4 n n 
N04 C03 5BX doub 5 n n 
C09 C07 5BX sing 6 n n 
C09 C11 5BX sing 7 n n 
C01 N02 5BX sing 8 n n 
C07 O08 5BX sing 9 n n 
C03 N02 5BX sing 10 n n 
C03 O08 5BX sing 11 n n 
C18 C17 5BX doub 12 n y 
C18 C19 5BX sing 13 n y 
C11 C19 5BX sing 14 n y 
C11 C12 5BX doub 15 n y 
C17 C16 5BX sing 16 n y 
C19 C14 5BX doub 17 n y 
C12 N13 5BX sing 18 n y 
C16 C15 5BX doub 19 n y 
C14 N13 5BX sing 20 n y 
C14 C15 5BX sing 21 n y 
C01 H011 5BX sing 22 n n 
C01 H013 5BX sing 23 n n 
C01 H012 5BX sing 24 n n 
N02 H021 5BX sing 25 n n 
C07 H071 5BX sing 26 n n 
C09 H091 5BX sing 27 n n 
C10 H103 5BX sing 28 n n 
C10 H101 5BX sing 29 n n 
C10 H102 5BX sing 30 n n 
C12 H121 5BX sing 31 n n 
N13 H131 5BX sing 32 n n 
C15 H151 5BX sing 33 n n 
C16 H161 5BX sing 34 n n 
C17 H171 5BX sing 35 n n 
C18 H181 5BX sing 36 n n 
#
_atom_sites.entry_id                     7ENS 
_atom_sites.fract_transf_matrix[1][1]    0.016194 
_atom_sites.fract_transf_matrix[1][2]    0.009349 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018699 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002988 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 401 4 ATP ATP . 
C 3 MG A 1 402 1 MG MG . 
D 4 5BX A 1 403 1 5BX 5BX . 
E 5 HOH A 1 501 6 HOH HOH . 
E 5 HOH A 2 502 23 HOH HOH . 
E 5 HOH A 3 503 20 HOH HOH . 
E 5 HOH A 4 504 45 HOH HOH . 
E 5 HOH A 5 505 36 HOH HOH . 
E 5 HOH A 6 506 67 HOH HOH . 
E 5 HOH A 7 507 59 HOH HOH . 
E 5 HOH A 8 508 10 HOH HOH . 
E 5 HOH A 9 509 62 HOH HOH . 
E 5 HOH A 10 510 7 HOH HOH . 
E 5 HOH A 11 511 22 HOH HOH . 
E 5 HOH A 12 512 9 HOH HOH . 
E 5 HOH A 13 513 64 HOH HOH . 
E 5 HOH A 14 514 5 HOH HOH . 
E 5 HOH A 15 515 2 HOH HOH . 
E 5 HOH A 16 516 4 HOH HOH . 
E 5 HOH A 17 517 15 HOH HOH . 
E 5 HOH A 18 518 55 HOH HOH . 
E 5 HOH A 19 519 47 HOH HOH . 
E 5 HOH A 20 520 16 HOH HOH . 
E 5 HOH A 21 521 24 HOH HOH . 
E 5 HOH A 22 522 33 HOH HOH . 
E 5 HOH A 23 523 27 HOH HOH . 
E 5 HOH A 24 524 28 HOH HOH . 
E 5 HOH A 25 525 3 HOH HOH . 
E 5 HOH A 26 526 17 HOH HOH . 
E 5 HOH A 27 527 14 HOH HOH . 
E 5 HOH A 28 528 1 HOH HOH . 
E 5 HOH A 29 529 35 HOH HOH . 
E 5 HOH A 30 530 8 HOH HOH . 
E 5 HOH A 31 531 13 HOH HOH . 
E 5 HOH A 32 532 66 HOH HOH . 
E 5 HOH A 33 533 51 HOH HOH . 
E 5 HOH A 34 534 42 HOH HOH . 
E 5 HOH A 35 535 12 HOH HOH . 
E 5 HOH A 36 536 25 HOH HOH . 
E 5 HOH A 37 537 18 HOH HOH . 
E 5 HOH A 38 538 50 HOH HOH . 
E 5 HOH A 39 539 41 HOH HOH . 
E 5 HOH A 40 540 29 HOH HOH . 
E 5 HOH A 41 541 44 HOH HOH . 
E 5 HOH A 42 542 38 HOH HOH . 
E 5 HOH A 43 543 52 HOH HOH . 
E 5 HOH A 44 544 32 HOH HOH . 
E 5 HOH A 45 545 30 HOH HOH . 
E 5 HOH A 46 546 39 HOH HOH . 
E 5 HOH A 47 547 65 HOH HOH . 
E 5 HOH A 48 548 11 HOH HOH . 
E 5 HOH A 49 549 34 HOH HOH . 
E 5 HOH A 50 550 40 HOH HOH . 
E 5 HOH A 51 551 21 HOH HOH . 
E 5 HOH A 52 552 48 HOH HOH . 
E 5 HOH A 53 553 19 HOH HOH . 
E 5 HOH A 54 554 46 HOH HOH . 
E 5 HOH A 55 555 61 HOH HOH . 
E 5 HOH A 56 556 63 HOH HOH . 
E 5 HOH A 57 557 43 HOH HOH . 
E 5 HOH A 58 558 56 HOH HOH . 
E 5 HOH A 59 559 72 HOH HOH . 
E 5 HOH A 60 560 54 HOH HOH . 
E 5 HOH A 61 561 58 HOH HOH . 
E 5 HOH A 62 562 70 HOH HOH . 
E 5 HOH A 63 563 57 HOH HOH . 
E 5 HOH A 64 564 53 HOH HOH . 
E 5 HOH A 65 565 37 HOH HOH . 
E 5 HOH A 66 566 26 HOH HOH . 
E 5 HOH A 67 567 68 HOH HOH . 
E 5 HOH A 68 568 71 HOH HOH . 
E 5 HOH A 69 569 49 HOH HOH . 
E 5 HOH A 70 570 31 HOH HOH . 
E 5 HOH A 71 571 60 HOH HOH . 
E 5 HOH A 72 572 69 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 5BX . . . D 4 12.759 50.578 21.825 1 36.4 ? C01 5BX 403 A 1 
HETATM 2 N N02 5BX . . . D 4 13.887 50.796 20.939 1 40.68 ? N02 5BX 403 A 1 
HETATM 3 C C03 5BX . . . D 4 13.788 50.654 19.629 1 41.12 ? C03 5BX 403 A 1 
HETATM 4 N N04 5BX . . . D 4 12.711 50.309 18.935 1 47.39 ? N04 5BX 403 A 1 
HETATM 5 C C05 5BX . . . D 4 13.035 50.277 17.61 1 42.24 ? C05 5BX 403 A 1 
HETATM 6 O O06 5BX . . . D 4 12.265 49.993 16.699 1 45.78 ? O06 5BX 403 A 1 
HETATM 7 C C07 5BX . . . D 4 14.505 50.654 17.501 1 40.56 ? C07 5BX 403 A 1 
HETATM 8 O O08 5BX . . . D 4 14.884 50.876 18.883 1 41.21 ? O08 5BX 403 A 1 
HETATM 9 C C09 5BX . . . D 4 15.335 49.523 16.864 1 39.98 ? C09 5BX 403 A 1 
HETATM 10 C C10 5BX . . . D 4 15.241 48.235 17.676 1 42.96 ? C10 5BX 403 A 1 
HETATM 11 C C11 5BX . . . D 4 16.772 49.953 16.68 1 38.76 ? C11 5BX 403 A 1 
HETATM 12 C C12 5BX . . . D 4 17.654 50.343 17.645 1 33.72 ? C12 5BX 403 A 1 
HETATM 13 N N13 5BX . . . D 4 18.862 50.656 17.083 1 36.17 ? N13 5BX 403 A 1 
HETATM 14 C C14 5BX . . . D 4 18.785 50.471 15.725 1 35.61 ? C14 5BX 403 A 1 
HETATM 15 C C15 5BX . . . D 4 19.741 50.653 14.733 1 39.47 ? C15 5BX 403 A 1 
HETATM 16 C C16 5BX . . . D 4 19.383 50.385 13.42 1 37.53 ? C16 5BX 403 A 1 
HETATM 17 C C17 5BX . . . D 4 18.103 49.947 13.109 1 36.85 ? C17 5BX 403 A 1 
HETATM 18 C C18 5BX . . . D 4 17.151 49.767 14.104 1 38.21 ? C18 5BX 403 A 1 
HETATM 19 C C19 5BX . . . D 4 17.483 50.028 15.43 1 37.38 ? C19 5BX 403 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           548 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           19 
#