data_7ENT # _model_server_result.job_id X6vKxBqSvtcprzgJupyTtw _model_server_result.datetime_utc '2024-11-25 09:47:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ent # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7ENT # _exptl.entry_id 7ENT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7ENT _cell.length_a 61.46 _cell.length_b 61.46 _cell.length_c 334.599 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ENT _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_775 -y+2,-x+2,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 61.46 106.451843 55.7665 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O2G ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc2 B O2B ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc3 B O2A ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc4 C MG MG . A MG 402 1_555 E O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc5 C MG MG . A MG 402 1_555 E O HOH . A HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7ENT _atom_sites.fract_transf_matrix[1][1] 0.016271 _atom_sites.fract_transf_matrix[1][2] 0.009394 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 401 4 ATP ATP . C 3 MG A 1 402 1 MG MG . D 4 J9L A 1 403 1 J9L Y31 . E 5 HOH A 1 501 52 HOH HOH . E 5 HOH A 2 502 59 HOH HOH . E 5 HOH A 3 503 54 HOH HOH . E 5 HOH A 4 504 23 HOH HOH . E 5 HOH A 5 505 27 HOH HOH . E 5 HOH A 6 506 5 HOH HOH . E 5 HOH A 7 507 43 HOH HOH . E 5 HOH A 8 508 3 HOH HOH . E 5 HOH A 9 509 36 HOH HOH . E 5 HOH A 10 510 21 HOH HOH . E 5 HOH A 11 511 48 HOH HOH . E 5 HOH A 12 512 19 HOH HOH . E 5 HOH A 13 513 30 HOH HOH . E 5 HOH A 14 514 20 HOH HOH . E 5 HOH A 15 515 2 HOH HOH . E 5 HOH A 16 516 14 HOH HOH . E 5 HOH A 17 517 28 HOH HOH . E 5 HOH A 18 518 6 HOH HOH . E 5 HOH A 19 519 66 HOH HOH . E 5 HOH A 20 520 4 HOH HOH . E 5 HOH A 21 521 56 HOH HOH . E 5 HOH A 22 522 15 HOH HOH . E 5 HOH A 23 523 69 HOH HOH . E 5 HOH A 24 524 7 HOH HOH . E 5 HOH A 25 525 26 HOH HOH . E 5 HOH A 26 526 1 HOH HOH . E 5 HOH A 27 527 10 HOH HOH . E 5 HOH A 28 528 25 HOH HOH . E 5 HOH A 29 529 35 HOH HOH . E 5 HOH A 30 530 34 HOH HOH . E 5 HOH A 31 531 60 HOH HOH . E 5 HOH A 32 532 8 HOH HOH . E 5 HOH A 33 533 67 HOH HOH . E 5 HOH A 34 534 12 HOH HOH . E 5 HOH A 35 535 44 HOH HOH . E 5 HOH A 36 536 16 HOH HOH . E 5 HOH A 37 537 49 HOH HOH . E 5 HOH A 38 538 53 HOH HOH . E 5 HOH A 39 539 51 HOH HOH . E 5 HOH A 40 540 45 HOH HOH . E 5 HOH A 41 541 22 HOH HOH . E 5 HOH A 42 542 24 HOH HOH . E 5 HOH A 43 543 46 HOH HOH . E 5 HOH A 44 544 38 HOH HOH . E 5 HOH A 45 545 64 HOH HOH . E 5 HOH A 46 546 47 HOH HOH . E 5 HOH A 47 547 42 HOH HOH . E 5 HOH A 48 548 17 HOH HOH . E 5 HOH A 49 549 55 HOH HOH . E 5 HOH A 50 550 18 HOH HOH . E 5 HOH A 51 551 57 HOH HOH . E 5 HOH A 52 552 41 HOH HOH . E 5 HOH A 53 553 9 HOH HOH . E 5 HOH A 54 554 13 HOH HOH . E 5 HOH A 55 555 71 HOH HOH . E 5 HOH A 56 556 29 HOH HOH . E 5 HOH A 57 557 31 HOH HOH . E 5 HOH A 58 558 11 HOH HOH . E 5 HOH A 59 559 68 HOH HOH . E 5 HOH A 60 560 61 HOH HOH . E 5 HOH A 61 561 40 HOH HOH . E 5 HOH A 62 562 62 HOH HOH . E 5 HOH A 63 563 33 HOH HOH . E 5 HOH A 64 564 58 HOH HOH . E 5 HOH A 65 565 70 HOH HOH . E 5 HOH A 66 566 65 HOH HOH . E 5 HOH A 67 567 37 HOH HOH . E 5 HOH A 68 568 50 HOH HOH . E 5 HOH A 69 569 39 HOH HOH . E 5 HOH A 70 570 32 HOH HOH . E 5 HOH A 71 571 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 8.562 45.19 19.053 1 67.28 ? PG ATP 401 A 1 HETATM 2 O O1G ATP . . . B 2 7.055 45.269 19.017 1 64.5 ? O1G ATP 401 A 1 HETATM 3 O O2G ATP . . . B 2 9.221 46.527 18.815 1 52.11 ? O2G ATP 401 A 1 HETATM 4 O O3G ATP . . . B 2 9.079 44.497 20.29 1 53.18 ? O3G ATP 401 A 1 HETATM 5 P PB ATP . . . B 2 9.152 44.55 16.242 1 47.37 ? PB ATP 401 A 1 HETATM 6 O O1B ATP . . . B 2 8.438 43.483 15.48 1 57.75 ? O1B ATP 401 A 1 HETATM 7 O O2B ATP . . . B 2 8.825 45.984 15.986 1 57.59 ? O2B ATP 401 A 1 HETATM 8 O O3B ATP . . . B 2 8.989 44.257 17.808 1 51.89 ? O3B ATP 401 A 1 HETATM 9 P PA ATP . . . B 2 11.97 45.358 16.096 1 49.6 ? PA ATP 401 A 1 HETATM 10 O O1A ATP . . . B 2 13.134 44.667 16.725 1 27.19 ? O1A ATP 401 A 1 HETATM 11 O O2A ATP . . . B 2 11.512 46.651 16.686 1 40.36 ? O2A ATP 401 A 1 HETATM 12 O O3A ATP . . . B 2 10.729 44.342 16.056 1 50.24 ? O3A ATP 401 A 1 HETATM 13 O O5' ATP . . . B 2 12.253 45.559 14.53 1 45.12 ? O5' ATP 401 A 1 HETATM 14 C C5' ATP . . . B 2 13.612 45.404 14.048 1 39.66 ? C5' ATP 401 A 1 HETATM 15 C C4' ATP . . . B 2 13.614 45.419 12.539 1 42.04 ? C4' ATP 401 A 1 HETATM 16 O O4' ATP . . . B 2 12.466 44.675 12.052 1 40.92 ? O4' ATP 401 A 1 HETATM 17 C C3' ATP . . . B 2 13.525 46.803 11.879 1 40.12 ? C3' ATP 401 A 1 HETATM 18 O O3' ATP . . . B 2 14.344 46.873 10.719 1 26.58 ? O3' ATP 401 A 1 HETATM 19 C C2' ATP . . . B 2 12.04 46.916 11.526 1 42.61 ? C2' ATP 401 A 1 HETATM 20 O O2' ATP . . . B 2 11.799 47.791 10.447 1 35.16 ? O2' ATP 401 A 1 HETATM 21 C C1' ATP . . . B 2 11.717 45.471 11.164 1 40.26 ? C1' ATP 401 A 1 HETATM 22 N N9 ATP . . . B 2 10.309 45.125 11.319 1 41.32 ? N9 ATP 401 A 1 HETATM 23 C C8 ATP . . . B 2 9.596 45.009 12.488 1 43.54 ? C8 ATP 401 A 1 HETATM 24 N N7 ATP . . . B 2 8.341 44.682 12.282 1 41.37 ? N7 ATP 401 A 1 HETATM 25 C C5 ATP . . . B 2 8.225 44.577 10.901 1 37.45 ? C5 ATP 401 A 1 HETATM 26 C C6 ATP . . . B 2 7.145 44.259 10.056 1 36.69 ? C6 ATP 401 A 1 HETATM 27 N N6 ATP . . . B 2 5.921 43.975 10.493 1 46.8 ? N6 ATP 401 A 1 HETATM 28 N N1 ATP . . . B 2 7.382 44.246 8.723 1 36.63 ? N1 ATP 401 A 1 HETATM 29 C C2 ATP . . . B 2 8.616 44.533 8.288 1 38.09 ? C2 ATP 401 A 1 HETATM 30 N N3 ATP . . . B 2 9.704 44.845 8.986 1 40.09 ? N3 ATP 401 A 1 HETATM 31 C C4 ATP . . . B 2 9.436 44.849 10.302 1 40.24 ? C4 ATP 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #