data_7ENT
#
_model_server_result.job_id            c5dOvmKrzkYfJvIEWPmnYA 
_model_server_result.datetime_utc      '2024-11-25 09:44:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ent 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    7ENT 
#
_exptl.entry_id    7ENT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              271.314 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5S)-2-(methylamino)-5-[(1R)-1-(4-methyl-1H-indol-3-yl)ethyl]-1,3-oxazol-4-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7ENT 
_cell.length_a            61.46 
_cell.length_b            61.46 
_cell.length_c            334.599 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ENT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    'P 65 2 (x,y,z+1/12)' 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_775 -y+2,-x+2,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 61.46 106.451843 55.7665 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O2G ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc2 B O2B ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc3 B O2A ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc4 C MG MG . A MG 402 1_555 E O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc5 C MG MG . A MG 402 1_555 E O HOH . A HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
#
_chem_comp.formula           'C15 H17 N3 O2' 
_chem_comp.formula_weight    271.314 
_chem_comp.id                J9L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5S)-2-(methylamino)-5-[(1R)-1-(4-methyl-1H-indol-3-yl)ethyl]-1,3-oxazol-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C11 C10 J9L doub 222 n y 
C11 C12 J9L sing 223 n y 
C13 C12 J9L sing 224 n n 
C10 C9 J9L sing 225 n y 
C12 C14 J9L doub 226 n y 
C9 C8 J9L doub 227 n y 
C14 C8 J9L sing 228 n y 
C14 C6 J9L sing 229 n y 
C8 N2 J9L sing 230 n y 
C6 C1 J9L sing 231 n n 
C6 C7 J9L doub 232 n y 
C1 C J9L sing 233 n n 
C1 C2 J9L sing 234 n n 
O1 C5 J9L doub 235 n n 
N2 C7 J9L sing 236 n y 
C2 C5 J9L sing 237 n n 
C2 O J9L sing 238 n n 
C5 N1 J9L sing 239 n n 
O C3 J9L sing 240 n n 
N1 C3 J9L doub 241 n n 
C3 N J9L sing 242 n n 
N C4 J9L sing 243 n n 
C4 H1 J9L sing 244 n n 
C4 H2 J9L sing 245 n n 
C4 H3 J9L sing 246 n n 
N H4 J9L sing 247 n n 
C2 H5 J9L sing 248 n n 
C1 H6 J9L sing 249 n n 
C H7 J9L sing 250 n n 
C H8 J9L sing 251 n n 
C H9 J9L sing 252 n n 
C10 H10 J9L sing 253 n n 
C11 H11 J9L sing 254 n n 
C13 H12 J9L sing 255 n n 
C13 H13 J9L sing 256 n n 
C13 H14 J9L sing 257 n n 
C7 H15 J9L sing 258 n n 
C9 H16 J9L sing 259 n n 
N2 H17 J9L sing 260 n n 
#
_atom_sites.entry_id                     7ENT 
_atom_sites.fract_transf_matrix[1][1]    0.016271 
_atom_sites.fract_transf_matrix[1][2]    0.009394 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018788 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002989 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 401 4 ATP ATP . 
C 3 MG A 1 402 1 MG MG . 
D 4 J9L A 1 403 1 J9L Y31 . 
E 5 HOH A 1 501 52 HOH HOH . 
E 5 HOH A 2 502 59 HOH HOH . 
E 5 HOH A 3 503 54 HOH HOH . 
E 5 HOH A 4 504 23 HOH HOH . 
E 5 HOH A 5 505 27 HOH HOH . 
E 5 HOH A 6 506 5 HOH HOH . 
E 5 HOH A 7 507 43 HOH HOH . 
E 5 HOH A 8 508 3 HOH HOH . 
E 5 HOH A 9 509 36 HOH HOH . 
E 5 HOH A 10 510 21 HOH HOH . 
E 5 HOH A 11 511 48 HOH HOH . 
E 5 HOH A 12 512 19 HOH HOH . 
E 5 HOH A 13 513 30 HOH HOH . 
E 5 HOH A 14 514 20 HOH HOH . 
E 5 HOH A 15 515 2 HOH HOH . 
E 5 HOH A 16 516 14 HOH HOH . 
E 5 HOH A 17 517 28 HOH HOH . 
E 5 HOH A 18 518 6 HOH HOH . 
E 5 HOH A 19 519 66 HOH HOH . 
E 5 HOH A 20 520 4 HOH HOH . 
E 5 HOH A 21 521 56 HOH HOH . 
E 5 HOH A 22 522 15 HOH HOH . 
E 5 HOH A 23 523 69 HOH HOH . 
E 5 HOH A 24 524 7 HOH HOH . 
E 5 HOH A 25 525 26 HOH HOH . 
E 5 HOH A 26 526 1 HOH HOH . 
E 5 HOH A 27 527 10 HOH HOH . 
E 5 HOH A 28 528 25 HOH HOH . 
E 5 HOH A 29 529 35 HOH HOH . 
E 5 HOH A 30 530 34 HOH HOH . 
E 5 HOH A 31 531 60 HOH HOH . 
E 5 HOH A 32 532 8 HOH HOH . 
E 5 HOH A 33 533 67 HOH HOH . 
E 5 HOH A 34 534 12 HOH HOH . 
E 5 HOH A 35 535 44 HOH HOH . 
E 5 HOH A 36 536 16 HOH HOH . 
E 5 HOH A 37 537 49 HOH HOH . 
E 5 HOH A 38 538 53 HOH HOH . 
E 5 HOH A 39 539 51 HOH HOH . 
E 5 HOH A 40 540 45 HOH HOH . 
E 5 HOH A 41 541 22 HOH HOH . 
E 5 HOH A 42 542 24 HOH HOH . 
E 5 HOH A 43 543 46 HOH HOH . 
E 5 HOH A 44 544 38 HOH HOH . 
E 5 HOH A 45 545 64 HOH HOH . 
E 5 HOH A 46 546 47 HOH HOH . 
E 5 HOH A 47 547 42 HOH HOH . 
E 5 HOH A 48 548 17 HOH HOH . 
E 5 HOH A 49 549 55 HOH HOH . 
E 5 HOH A 50 550 18 HOH HOH . 
E 5 HOH A 51 551 57 HOH HOH . 
E 5 HOH A 52 552 41 HOH HOH . 
E 5 HOH A 53 553 9 HOH HOH . 
E 5 HOH A 54 554 13 HOH HOH . 
E 5 HOH A 55 555 71 HOH HOH . 
E 5 HOH A 56 556 29 HOH HOH . 
E 5 HOH A 57 557 31 HOH HOH . 
E 5 HOH A 58 558 11 HOH HOH . 
E 5 HOH A 59 559 68 HOH HOH . 
E 5 HOH A 60 560 61 HOH HOH . 
E 5 HOH A 61 561 40 HOH HOH . 
E 5 HOH A 62 562 62 HOH HOH . 
E 5 HOH A 63 563 33 HOH HOH . 
E 5 HOH A 64 564 58 HOH HOH . 
E 5 HOH A 65 565 70 HOH HOH . 
E 5 HOH A 66 566 65 HOH HOH . 
E 5 HOH A 67 567 37 HOH HOH . 
E 5 HOH A 68 568 50 HOH HOH . 
E 5 HOH A 69 569 39 HOH HOH . 
E 5 HOH A 70 570 32 HOH HOH . 
E 5 HOH A 71 571 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 J9L . . . D 4 12.797 50.454 21.799 1 34.89 ? C4 J9L 403 A 1 
HETATM 2 C C5 J9L . . . D 4 13.087 50.464 17.686 1 33.24 ? C5 J9L 403 A 1 
HETATM 3 C C3 J9L . . . D 4 13.927 50.568 19.704 1 34.67 ? C3 J9L 403 A 1 
HETATM 4 N N J9L . . . D 4 14.015 50.577 21.02 1 30.44 ? N J9L 403 A 1 
HETATM 5 C C2 J9L . . . D 4 14.6 50.624 17.563 1 27.06 ? C2 J9L 403 A 1 
HETATM 6 C C1 J9L . . . D 4 15.379 49.542 16.785 1 28.21 ? C1 J9L 403 A 1 
HETATM 7 C C J9L . . . D 4 15.139 48.147 17.352 1 20.18 ? C J9L 403 A 1 
HETATM 8 O O J9L . . . D 4 15.03 50.644 18.944 1 33.68 ? O J9L 403 A 1 
HETATM 9 O O1 J9L . . . D 4 12.248 50.339 16.798 1 27.63 ? O1 J9L 403 A 1 
HETATM 10 C C10 J9L . . . D 4 19.805 50.033 13.679 1 22.44 ? C10 J9L 403 A 1 
HETATM 11 C C11 J9L . . . D 4 18.524 49.717 13.247 1 26.72 ? C11 J9L 403 A 1 
HETATM 12 C C12 J9L . . . D 4 17.459 49.561 14.141 1 28.18 ? C12 J9L 403 A 1 
HETATM 13 C C13 J9L . . . D 4 16.119 49.107 13.613 1 29.21 ? C13 J9L 403 A 1 
HETATM 14 C C14 J9L . . . D 4 17.695 49.787 15.513 1 29.27 ? C14 J9L 403 A 1 
HETATM 15 C C6 J9L . . . D 4 16.864 49.813 16.701 1 29.82 ? C6 J9L 403 A 1 
HETATM 16 C C7 J9L . . . D 4 17.69 50.13 17.732 1 27.93 ? C7 J9L 403 A 1 
HETATM 17 C C8 J9L . . . D 4 19.006 50.108 15.927 1 24.93 ? C8 J9L 403 A 1 
HETATM 18 C C9 J9L . . . D 4 20.064 50.214 15.026 1 28.28 ? C9 J9L 403 A 1 
HETATM 19 N N1 J9L . . . D 4 12.801 50.463 19.019 1 33.92 ? N1 J9L 403 A 1 
HETATM 20 N N2 J9L . . . D 4 18.976 50.309 17.288 1 24.74 ? N2 J9L 403 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#