data_7EO7
#
_model_server_result.job_id            qyuC5yMwmNkM30cjft6Mdw 
_model_server_result.datetime_utc      '2024-10-22 15:09:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7eo7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    7EO7 
#
_exptl.entry_id    7EO7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              288.295 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[(1R)-4-methyl-1-oxidanyl-pent-3-enyl]-5,8-bis(oxidanyl)naphthalene-1,4-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.365 
_cell.angle_gamma         90 
_cell.entry_id            7EO7 
_cell.length_a            63.282 
_cell.length_b            82.892 
_cell.length_c            64.097 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7EO7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C16 H16 O5' 
_chem_comp.formula_weight    288.295 
_chem_comp.id                FNO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[(1R)-4-methyl-1-oxidanyl-pent-3-enyl]-5,8-bis(oxidanyl)naphthalene-1,4-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     shikonin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C17 FNO sing 83 n n 
C17 C20 FNO sing 84 n n 
C17 C14 FNO doub 85 n n 
C14 C08 FNO sing 86 n n 
C06 O01 FNO sing 87 n n 
C06 C08 FNO sing 88 n n 
C06 C07 FNO sing 89 n n 
C12 C07 FNO doub 90 n n 
C12 C13 FNO sing 91 n n 
C07 C10 FNO sing 92 n n 
O04 C13 FNO doub 93 n n 
C13 C11 FNO sing 94 n n 
C10 O02 FNO doub 95 n n 
C10 C09 FNO sing 96 n n 
C11 C09 FNO doub 97 n y 
C11 C16 FNO sing 98 n y 
C09 C15 FNO sing 99 n y 
O05 C16 FNO sing 100 n n 
C16 C19 FNO doub 101 n y 
C15 O03 FNO sing 102 n n 
C15 C18 FNO doub 103 n y 
C19 C18 FNO sing 104 n y 
C20 H1 FNO sing 105 n n 
C20 H2 FNO sing 106 n n 
C20 H3 FNO sing 107 n n 
C21 H4 FNO sing 108 n n 
C21 H5 FNO sing 109 n n 
C21 H6 FNO sing 110 n n 
C06 H7 FNO sing 111 n n 
C08 H8 FNO sing 112 n n 
C08 H9 FNO sing 113 n n 
C12 H10 FNO sing 114 n n 
C14 H11 FNO sing 115 n n 
C18 H12 FNO sing 116 n n 
C19 H13 FNO sing 117 n n 
O01 H14 FNO sing 118 n n 
O03 H15 FNO sing 119 n n 
O05 H16 FNO sing 120 n n 
#
_atom_sites.entry_id                     7EO7 
_atom_sites.fract_transf_matrix[1][1]    0.015802 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005246 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012064 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016439 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FNO B 1 401 301 FNO FNO . 
D 3 HOH A 1 401 75 HOH HOH . 
D 3 HOH A 2 402 100 HOH HOH . 
D 3 HOH A 3 403 96 HOH HOH . 
D 3 HOH A 4 404 28 HOH HOH . 
D 3 HOH A 5 405 25 HOH HOH . 
D 3 HOH A 6 406 5 HOH HOH . 
D 3 HOH A 7 407 82 HOH HOH . 
D 3 HOH A 8 408 2 HOH HOH . 
D 3 HOH A 9 409 43 HOH HOH . 
D 3 HOH A 10 410 87 HOH HOH . 
D 3 HOH A 11 411 58 HOH HOH . 
D 3 HOH A 12 412 10 HOH HOH . 
D 3 HOH A 13 413 39 HOH HOH . 
D 3 HOH A 14 414 24 HOH HOH . 
D 3 HOH A 15 415 77 HOH HOH . 
D 3 HOH A 16 416 7 HOH HOH . 
D 3 HOH A 17 417 64 HOH HOH . 
D 3 HOH A 18 418 27 HOH HOH . 
D 3 HOH A 19 419 3 HOH HOH . 
D 3 HOH A 20 420 26 HOH HOH . 
D 3 HOH A 21 421 41 HOH HOH . 
D 3 HOH A 22 422 92 HOH HOH . 
D 3 HOH A 23 423 14 HOH HOH . 
D 3 HOH A 24 424 108 HOH HOH . 
D 3 HOH A 25 425 44 HOH HOH . 
D 3 HOH A 26 426 20 HOH HOH . 
D 3 HOH A 27 427 105 HOH HOH . 
D 3 HOH A 28 428 12 HOH HOH . 
D 3 HOH A 29 429 66 HOH HOH . 
D 3 HOH A 30 430 37 HOH HOH . 
D 3 HOH A 31 431 46 HOH HOH . 
D 3 HOH A 32 432 11 HOH HOH . 
D 3 HOH A 33 433 79 HOH HOH . 
D 3 HOH A 34 434 63 HOH HOH . 
D 3 HOH A 35 435 106 HOH HOH . 
D 3 HOH A 36 436 68 HOH HOH . 
D 3 HOH A 37 437 22 HOH HOH . 
D 3 HOH A 38 438 34 HOH HOH . 
D 3 HOH A 39 439 74 HOH HOH . 
D 3 HOH A 40 440 80 HOH HOH . 
D 3 HOH A 41 441 120 HOH HOH . 
D 3 HOH A 42 442 50 HOH HOH . 
D 3 HOH A 43 443 13 HOH HOH . 
D 3 HOH A 44 444 89 HOH HOH . 
D 3 HOH A 45 445 72 HOH HOH . 
D 3 HOH A 46 446 67 HOH HOH . 
D 3 HOH A 47 447 107 HOH HOH . 
D 3 HOH A 48 448 110 HOH HOH . 
D 3 HOH A 49 449 78 HOH HOH . 
D 3 HOH A 50 450 113 HOH HOH . 
D 3 HOH A 51 451 56 HOH HOH . 
D 3 HOH A 52 452 52 HOH HOH . 
D 3 HOH A 53 453 71 HOH HOH . 
D 3 HOH A 54 454 81 HOH HOH . 
D 3 HOH A 55 455 49 HOH HOH . 
D 3 HOH A 56 456 109 HOH HOH . 
D 3 HOH A 57 457 18 HOH HOH . 
D 3 HOH A 58 458 42 HOH HOH . 
D 3 HOH A 59 459 116 HOH HOH . 
D 3 HOH A 60 460 114 HOH HOH . 
D 3 HOH A 61 461 98 HOH HOH . 
D 3 HOH A 62 462 117 HOH HOH . 
D 3 HOH A 63 463 118 HOH HOH . 
D 3 HOH A 64 464 60 HOH HOH . 
E 3 HOH B 1 501 97 HOH HOH . 
E 3 HOH B 2 502 16 HOH HOH . 
E 3 HOH B 3 503 9 HOH HOH . 
E 3 HOH B 4 504 36 HOH HOH . 
E 3 HOH B 5 505 1 HOH HOH . 
E 3 HOH B 6 506 15 HOH HOH . 
E 3 HOH B 7 507 21 HOH HOH . 
E 3 HOH B 8 508 65 HOH HOH . 
E 3 HOH B 9 509 85 HOH HOH . 
E 3 HOH B 10 510 23 HOH HOH . 
E 3 HOH B 11 511 61 HOH HOH . 
E 3 HOH B 12 512 38 HOH HOH . 
E 3 HOH B 13 513 69 HOH HOH . 
E 3 HOH B 14 514 48 HOH HOH . 
E 3 HOH B 15 515 29 HOH HOH . 
E 3 HOH B 16 516 83 HOH HOH . 
E 3 HOH B 17 517 53 HOH HOH . 
E 3 HOH B 18 518 30 HOH HOH . 
E 3 HOH B 19 519 103 HOH HOH . 
E 3 HOH B 20 520 31 HOH HOH . 
E 3 HOH B 21 521 86 HOH HOH . 
E 3 HOH B 22 522 57 HOH HOH . 
E 3 HOH B 23 523 17 HOH HOH . 
E 3 HOH B 24 524 55 HOH HOH . 
E 3 HOH B 25 525 91 HOH HOH . 
E 3 HOH B 26 526 6 HOH HOH . 
E 3 HOH B 27 527 84 HOH HOH . 
E 3 HOH B 28 528 4 HOH HOH . 
E 3 HOH B 29 529 32 HOH HOH . 
E 3 HOH B 30 530 119 HOH HOH . 
E 3 HOH B 31 531 70 HOH HOH . 
E 3 HOH B 32 532 88 HOH HOH . 
E 3 HOH B 33 533 35 HOH HOH . 
E 3 HOH B 34 534 112 HOH HOH . 
E 3 HOH B 35 535 19 HOH HOH . 
E 3 HOH B 36 536 45 HOH HOH . 
E 3 HOH B 37 537 54 HOH HOH . 
E 3 HOH B 38 538 90 HOH HOH . 
E 3 HOH B 39 539 93 HOH HOH . 
E 3 HOH B 40 540 40 HOH HOH . 
E 3 HOH B 41 541 51 HOH HOH . 
E 3 HOH B 42 542 76 HOH HOH . 
E 3 HOH B 43 543 94 HOH HOH . 
E 3 HOH B 44 544 33 HOH HOH . 
E 3 HOH B 45 545 99 HOH HOH . 
E 3 HOH B 46 546 102 HOH HOH . 
E 3 HOH B 47 547 8 HOH HOH . 
E 3 HOH B 48 548 101 HOH HOH . 
E 3 HOH B 49 549 59 HOH HOH . 
E 3 HOH B 50 550 95 HOH HOH . 
E 3 HOH B 51 551 47 HOH HOH . 
E 3 HOH B 52 552 62 HOH HOH . 
E 3 HOH B 53 553 111 HOH HOH . 
E 3 HOH B 54 554 73 HOH HOH . 
E 3 HOH B 55 555 115 HOH HOH . 
E 3 HOH B 56 556 104 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 FNO . . . C 2 -27.847 -27 34.435 1 60.11 ? C10 FNO 401 B 1 
HETATM 2 C C13 FNO . . . C 2 -29.527 -26.31 32.339 1 56.88 ? C13 FNO 401 B 1 
HETATM 3 C C15 FNO . . . C 2 -27.249 -29.13 33.341 1 57.6 ? C15 FNO 401 B 1 
HETATM 4 C C17 FNO . . . C 2 -30.232 -25.092 39.107 1 75.88 ? C17 FNO 401 B 1 
HETATM 5 C C20 FNO . . . C 2 -31.337 -26.028 38.613 1 60.22 ? C20 FNO 401 B 1 
HETATM 6 C C21 FNO . . . C 2 -30.822 -23.886 39.847 1 69.09 ? C21 FNO 401 B 1 
HETATM 7 C C06 FNO . . . C 2 -28.426 -24.854 35.618 1 65.89 ? C06 FNO 401 B 1 
HETATM 8 C C07 FNO . . . C 2 -28.554 -25.797 34.444 1 57.79 ? C07 FNO 401 B 1 
HETATM 9 C C08 FNO . . . C 2 -29.327 -25.44 36.718 1 63.66 ? C08 FNO 401 B 1 
HETATM 10 C C09 FNO . . . C 2 -27.973 -27.894 33.352 1 59.17 ? C09 FNO 401 B 1 
HETATM 11 C C11 FNO . . . C 2 -28.789 -27.547 32.344 1 56.81 ? C11 FNO 401 B 1 
HETATM 12 C C12 FNO . . . C 2 -29.403 -25.441 33.404 1 62.62 ? C12 FNO 401 B 1 
HETATM 13 C C14 FNO . . . C 2 -29.287 -24.61 38.003 1 67.36 ? C14 FNO 401 B 1 
HETATM 14 C C16 FNO . . . C 2 -28.904 -28.457 31.286 1 57.89 ? C16 FNO 401 B 1 
HETATM 15 C C18 FNO . . . C 2 -27.347 -30.034 32.287 1 50.36 ? C18 FNO 401 B 1 
HETATM 16 C C19 FNO . . . C 2 -28.199 -29.678 31.247 1 51.49 ? C19 FNO 401 B 1 
HETATM 17 O O01 FNO . . . C 2 -27.077 -24.799 36.003 1 77.21 ? O01 FNO 401 B 1 
HETATM 18 O O02 FNO . . . C 2 -26.984 -27.377 35.471 1 67.62 ? O02 FNO 401 B 1 
HETATM 19 O O03 FNO . . . C 2 -26.419 -29.414 34.426 1 60.03 ? O03 FNO 401 B 1 
HETATM 20 O O04 FNO . . . C 2 -30.39 -25.946 31.296 1 65.01 ? O04 FNO 401 B 1 
HETATM 21 O O05 FNO . . . C 2 -29.783 -28.022 30.298 1 56.5 ? O05 FNO 401 B 1 
#
_model_server_stats.io_time_ms              79 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           21 
#