data_7EO8
#
_model_server_result.job_id            '_SQ3KuIlk_WMSqZ_DJYtyw' 
_model_server_result.datetime_utc      '2024-10-22 14:57:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7eo8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    7EO8 
#
_exptl.entry_id    7EO8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              288.295 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[(1R)-4-methyl-1-oxidanyl-pent-3-enyl]-5,8-bis(oxidanyl)naphthalene-1,4-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.94 
_cell.angle_beta          102.703 
_cell.angle_gamma         108.62 
_cell.entry_id            7EO8 
_cell.length_a            55.336 
_cell.length_b            60.62 
_cell.length_c            68.295 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7EO8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C16 H16 O5' 
_chem_comp.formula_weight    288.295 
_chem_comp.id                FNO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[(1R)-4-methyl-1-oxidanyl-pent-3-enyl]-5,8-bis(oxidanyl)naphthalene-1,4-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     shikonin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C17 FNO sing 83 n n 
C17 C20 FNO sing 84 n n 
C17 C14 FNO doub 85 n n 
C14 C08 FNO sing 86 n n 
C06 O01 FNO sing 87 n n 
C06 C08 FNO sing 88 n n 
C06 C07 FNO sing 89 n n 
C12 C07 FNO doub 90 n n 
C12 C13 FNO sing 91 n n 
C07 C10 FNO sing 92 n n 
O04 C13 FNO doub 93 n n 
C13 C11 FNO sing 94 n n 
C10 O02 FNO doub 95 n n 
C10 C09 FNO sing 96 n n 
C11 C09 FNO doub 97 n y 
C11 C16 FNO sing 98 n y 
C09 C15 FNO sing 99 n y 
O05 C16 FNO sing 100 n n 
C16 C19 FNO doub 101 n y 
C15 O03 FNO sing 102 n n 
C15 C18 FNO doub 103 n y 
C19 C18 FNO sing 104 n y 
C20 H1 FNO sing 105 n n 
C20 H2 FNO sing 106 n n 
C20 H3 FNO sing 107 n n 
C21 H4 FNO sing 108 n n 
C21 H5 FNO sing 109 n n 
C21 H6 FNO sing 110 n n 
C06 H7 FNO sing 111 n n 
C08 H8 FNO sing 112 n n 
C08 H9 FNO sing 113 n n 
C12 H10 FNO sing 114 n n 
C14 H11 FNO sing 115 n n 
C18 H12 FNO sing 116 n n 
C19 H13 FNO sing 117 n n 
O01 H14 FNO sing 118 n n 
O03 H15 FNO sing 119 n n 
O05 H16 FNO sing 120 n n 
#
_atom_sites.entry_id                     7EO8 
_atom_sites.fract_transf_matrix[1][1]    0.018071 
_atom_sites.fract_transf_matrix[1][2]    0.006089 
_atom_sites.fract_transf_matrix[1][3]    0.004665 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017407 
_atom_sites.fract_transf_matrix[2][3]    0.001638 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015076 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           FNO 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     301 
_pdbx_nonpoly_scheme.pdb_mon_id       FNO 
_pdbx_nonpoly_scheme.auth_mon_id      FNO 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 FNO . . . C 2 67.557 -33.536 0.615 1 65.81 ? C10 FNO 401 A 1 
HETATM 2 C C13 FNO . . . C 2 65.178 -32.104 0.97 1 68.36 ? C13 FNO 401 A 1 
HETATM 3 C C15 FNO . . . C 2 67.759 -33.765 3.092 1 59.86 ? C15 FNO 401 A 1 
HETATM 4 C C17 FNO . . . C 2 65.548 -33.8 -5.236 1 75.83 ? C17 FNO 401 A 1 
HETATM 5 C C20 FNO . . . C 2 66.113 -34.47 -6.488 1 75.3 ? C20 FNO 401 A 1 
HETATM 6 C C21 FNO . . . C 2 64.031 -34.003 -5.118 1 72.96 ? C21 FNO 401 A 1 
HETATM 7 C C06 FNO . . . C 2 67.41 -33.339 -1.898 1 69.71 ? C06 FNO 401 A 1 
HETATM 8 C C07 FNO . . . C 2 66.853 -33.056 -0.491 1 66.64 ? C07 FNO 401 A 1 
HETATM 9 C C08 FNO . . . C 2 66.277 -33.182 -2.91 1 70.73 ? C08 FNO 401 A 1 
HETATM 10 C C09 FNO . . . C 2 67.065 -33.294 1.935 1 61.68 ? C09 FNO 401 A 1 
HETATM 11 C C11 FNO . . . C 2 65.907 -32.597 2.091 1 65.8 ? C11 FNO 401 A 1 
HETATM 12 C C12 FNO . . . C 2 65.659 -32.334 -0.32 1 60.22 ? C12 FNO 401 A 1 
HETATM 13 C C14 FNO . . . C 2 66.273 -34.274 -3.979 1 72.4 ? C14 FNO 401 A 1 
HETATM 14 C C16 FNO . . . C 2 65.389 -32.341 3.385 1 63.08 ? C16 FNO 401 A 1 
HETATM 15 C C18 FNO . . . C 2 67.261 -33.517 4.374 1 55.32 ? C18 FNO 401 A 1 
HETATM 16 C C19 FNO . . . C 2 66.068 -32.804 4.513 1 62.57 ? C19 FNO 401 A 1 
HETATM 17 O O01 FNO . . . C 2 68.483 -32.479 -2.204 1 70.94 ? O01 FNO 401 A 1 
HETATM 18 O O02 FNO . . . C 2 68.754 -34.249 0.407 1 69.58 ? O02 FNO 401 A 1 
HETATM 19 O O03 FNO . . . C 2 68.956 -34.477 2.93 1 58.7 ? O03 FNO 401 A 1 
HETATM 20 O O04 FNO . . . C 2 63.982 -31.402 1.223 1 66.36 ? O04 FNO 401 A 1 
HETATM 21 O O05 FNO . . . C 2 64.193 -31.616 3.478 1 66 ? O05 FNO 401 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#