data_7EOQ
#
_model_server_result.job_id            HvcHwapexNHa4ZoAqwXjfQ 
_model_server_result.datetime_utc      '2024-11-12 20:54:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7eoq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":902}' 
#
_entry.id    7EOQ 
#
_exptl.entry_id    7EOQ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              252.205 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-4-(3-phosphonopropyl)piperazine-2-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7EOQ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7EOQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 87 A CYS 87 1_555 A SG CYS 320 A CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 429 A CYS 429 1_555 A SG CYS 455 A CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 436 A CYS 436 1_555 A SG CYS 456 A CYS 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 794 A CYS 794 1_555 D SG CYS 698 D CYS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 B SG CYS 79 B CYS 79 1_555 B SG CYS 308 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 B SG CYS 420 B CYS 420 1_555 B SG CYS 454 B CYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 B SG CYS 436 B CYS 436 1_555 B SG CYS 455 B CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf8 B SG CYS 698 B CYS 698 1_555 C SG CYS 794 C CYS 794 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 B SG CYS 744 B CYS 744 1_555 B SG CYS 798 B CYS 798 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf10 C SG CYS 87 C CYS 87 1_555 C SG CYS 320 C CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf11 C SG CYS 429 C CYS 429 1_555 C SG CYS 455 C CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 C SG CYS 436 C CYS 436 1_555 C SG CYS 456 C CYS 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf13 D SG CYS 79 D CYS 79 1_555 D SG CYS 308 D CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf14 D SG CYS 420 D CYS 420 1_555 D SG CYS 454 D CYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf15 D SG CYS 436 D CYS 436 1_555 D SG CYS 455 D CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf16 D SG CYS 744 D CYS 744 1_555 D SG CYS 798 D CYS 798 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 687 A ASN 687 1_555 E C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 B ND2 ASN 276 B ASN 276 1_555 G C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 B ND2 ASN 471 B ASN 471 1_555 I C1 NAG . B NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale4 B ND2 ASN 771 B ASN 771 1_555 H C1 NAG . B NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale5 C ND2 ASN 687 C ASN 687 1_555 J C1 NAG . C NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale6 D ND2 ASN 276 D ASN 276 1_555 L C1 NAG . D NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale7 D ND2 ASN 471 D ASN 471 1_555 N C1 NAG . D NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale8 D ND2 ASN 771 D ASN 771 1_555 M C1 NAG . D NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
#
_chem_comp.formula           'C8 H17 N2 O5 P' 
_chem_comp.formula_weight    252.205 
_chem_comp.id                7RC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-4-(3-phosphonopropyl)piperazine-2-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O04 P01 7RC doub 1 n n 
O02 P01 7RC sing 2 n n 
P01 O03 7RC sing 3 n n 
P01 C07 7RC sing 4 n n 
C07 C06 7RC sing 5 n n 
C06 C04 7RC sing 6 n n 
C03 N01 7RC sing 7 n n 
C03 C05 7RC sing 8 n n 
C04 N01 7RC sing 9 n n 
N01 C02 7RC sing 10 n n 
C05 N02 7RC sing 11 n n 
C02 C01 7RC sing 12 n n 
N02 C01 7RC sing 13 n n 
C01 C08 7RC sing 14 n n 
C08 O05 7RC doub 15 n n 
C08 O01 7RC sing 16 n n 
C01 H011 7RC sing 17 n n 
O01 H2 7RC sing 18 n n 
C02 H022 7RC sing 19 n n 
C02 H023 7RC sing 20 n n 
N02 H3 7RC sing 21 n n 
O02 H4 7RC sing 22 n n 
C03 H031 7RC sing 23 n n 
C03 H032 7RC sing 24 n n 
O03 H5 7RC sing 25 n n 
C04 H042 7RC sing 26 n n 
C04 H041 7RC sing 27 n n 
C05 H051 7RC sing 28 n n 
C05 H052 7RC sing 29 n n 
C06 H062 7RC sing 30 n n 
C06 H061 7RC sing 31 n n 
C07 H072 7RC sing 32 n n 
C07 H071 7RC sing 33 n n 
#
_atom_sites.entry_id                     7EOQ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG A 1 901 838 NAG NAG . 
F 4 7RC A 1 902 1 7RC 7RC . 
G 3 NAG B 1 901 845 NAG NAG . 
H 3 NAG B 1 902 846 NAG NAG . 
I 3 NAG B 1 903 847 NAG NAG . 
J 3 NAG C 1 901 838 NAG NAG . 
K 4 7RC C 1 902 1 7RC 7RC . 
L 3 NAG D 1 901 845 NAG NAG . 
M 3 NAG D 1 902 846 NAG NAG . 
N 3 NAG D 1 903 847 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P01 7RC . . . K 4 100.308 142.058 121.787 1 20 ? P01 7RC 902 C 1 
HETATM 2 C C01 7RC . . . K 4 104.213 141.263 128.382 1 20 ? C01 7RC 902 C 1 
HETATM 3 N N01 7RC . . . K 4 102.969 141.635 126.286 1 20 ? N01 7RC 902 C 1 
HETATM 4 O O01 7RC . . . K 4 103.422 141.934 130.485 1 20 ? O01 7RC 902 C 1 
HETATM 5 C C02 7RC . . . K 4 103.192 142.138 127.649 1 20 ? C02 7RC 902 C 1 
HETATM 6 N N02 7RC . . . K 4 105.478 141.187 127.651 1 20 ? N02 7RC 902 C 1 
HETATM 7 O O02 7RC . . . K 4 99.113 143.019 121.295 1 20 ? O02 7RC 902 C 1 
HETATM 8 C C03 7RC . . . K 4 104.236 141.577 125.547 1 20 ? C03 7RC 902 C 1 
HETATM 9 O O03 7RC . . . K 4 99.575 140.666 122.125 1 20 ? O03 7RC 902 C 1 
HETATM 10 C C04 7RC . . . K 4 101.994 142.465 125.579 1 20 ? C04 7RC 902 C 1 
HETATM 11 O O04 7RC . . . K 4 101.495 141.976 120.892 1 20 ? O04 7RC 902 C 1 
HETATM 12 C C05 7RC . . . K 4 105.255 140.707 126.288 1 20 ? C05 7RC 902 C 1 
HETATM 13 O O05 7RC . . . K 4 105.644 142.225 130.072 1 20 ? O05 7RC 902 C 1 
HETATM 14 C C06 7RC . . . K 4 101.7 141.879 124.201 1 20 ? C06 7RC 902 C 1 
HETATM 15 C C07 7RC . . . K 4 100.682 142.708 123.429 1 20 ? C07 7RC 902 C 1 
HETATM 16 C C08 7RC . . . K 4 104.535 141.858 129.715 1 20 ? C08 7RC 902 C 1 
HETATM 17 H H011 7RC . . . K 4 103.807 140.26 128.512 1 20 ? H011 7RC 902 C 1 
HETATM 18 H H022 7RC . . . K 4 103.567 143.16 127.597 1 20 ? H022 7RC 902 C 1 
HETATM 19 H H023 7RC . . . K 4 102.249 142.123 128.195 1 20 ? H023 7RC 902 C 1 
HETATM 20 H H3 7RC . . . K 4 106.077 140.591 128.107 1 20 ? H3 7RC 902 C 1 
HETATM 21 H H031 7RC . . . K 4 104.636 142.586 125.443 1 20 ? H031 7RC 902 C 1 
HETATM 22 H H032 7RC . . . K 4 104.055 141.154 124.561 1 20 ? H032 7RC 902 C 1 
HETATM 23 H H042 7RC . . . K 4 101.071 142.508 126.157 1 20 ? H042 7RC 902 C 1 
HETATM 24 H H041 7RC . . . K 4 102.394 143.472 125.464 1 20 ? H041 7RC 902 C 1 
HETATM 25 H H051 7RC . . . K 4 104.884 139.683 126.329 1 20 ? H051 7RC 902 C 1 
HETATM 26 H H052 7RC . . . K 4 106.2 140.728 125.746 1 20 ? H052 7RC 902 C 1 
HETATM 27 H H062 7RC . . . K 4 102.626 141.837 123.631 1 20 ? H062 7RC 902 C 1 
HETATM 28 H H061 7RC . . . K 4 101.313 140.868 124.322 1 20 ? H061 7RC 902 C 1 
HETATM 29 H H072 7RC . . . K 4 99.759 142.748 124.005 1 20 ? H072 7RC 902 C 1 
HETATM 30 H H071 7RC . . . K 4 101.069 143.72 123.322 1 20 ? H071 7RC 902 C 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#