data_7EPB # _model_server_result.job_id O8igx6W81t7JqlWt-kz6Ew _model_server_result.datetime_utc '2024-11-04 22:43:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7epb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":901}' # _entry.id 7EPB # _exptl.entry_id 7EPB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 185.177 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,2S,5R,6S)-2-aminobicyclo[3.1.0]hexane-2,6-dicarboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EPB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EPB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 A CYS 50 1_555 A SG CYS 84 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 113 A CYS 121 1_555 B SG CYS 113 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 226 A CYS 234 1_555 A SG CYS 510 A CYS 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 347 A CYS 355 1_555 A SG CYS 354 A CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 392 A CYS 400 1_555 A SG CYS 399 A CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 492 A CYS 500 1_555 A SG CYS 511 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 496 A CYS 504 1_555 A SG CYS 514 A CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 517 A CYS 525 1_555 A SG CYS 529 A CYS 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 A SG CYS 532 A CYS 540 1_555 A SG CYS 545 A CYS 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf10 A SG CYS 624 A CYS 632 1_555 A SG CYS 713 A CYS 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 B SG CYS 42 B CYS 50 1_555 B SG CYS 84 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 B SG CYS 226 B CYS 234 1_555 B SG CYS 510 B CYS 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 B SG CYS 347 B CYS 355 1_555 B SG CYS 354 B CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 B SG CYS 392 B CYS 400 1_555 B SG CYS 399 B CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf15 B SG CYS 492 B CYS 500 1_555 B SG CYS 511 B CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 B SG CYS 496 B CYS 504 1_555 B SG CYS 514 B CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 B SG CYS 517 B CYS 525 1_555 B SG CYS 529 B CYS 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf18 B SG CYS 532 B CYS 540 1_555 B SG CYS 545 B CYS 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf19 B SG CYS 624 B CYS 632 1_555 B SG CYS 713 B CYS 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf20 C SG CYS 22 C CYS 22 1_555 C SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf21 D SG CYS 22 D CYS 22 1_555 D SG CYS 95 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C8 H11 N O4' _chem_comp.formula_weight 185.177 _chem_comp.id 40F _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,2S,5R,6S)-2-aminobicyclo[3.1.0]hexane-2,6-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C 40F doub 1 n n N C1 40F sing 2 n n C C1 40F sing 3 n n C O1 40F sing 4 n n C1 C2 40F sing 5 n n C1 C7 40F sing 6 n n C2 C3 40F sing 7 n n C2 C5 40F sing 8 n n C7 C6 40F sing 9 n n C3 C4 40F sing 10 n n C3 C5 40F sing 11 n n C4 O3 40F doub 12 n n C4 O2 40F sing 13 n n C5 C6 40F sing 14 n n O1 H1 40F sing 15 n n C7 H2 40F sing 16 n n C7 H3 40F sing 17 n n O2 H4 40F sing 18 n n C6 H5 40F sing 19 n n C6 H6 40F sing 20 n n C5 H7 40F sing 21 n n C3 H8 40F sing 22 n n C2 H9 40F sing 23 n n N H10 40F sing 24 n n N H11 40F sing 25 n n # _atom_sites.entry_id 7EPB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 40F A 1 901 2 40F LIG . F 3 40F B 1 901 1 40F LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 40F . . . F 3 157.743 137.98 82.606 1 73 ? O1 40F 901 B 1 HETATM 2 C C7 40F . . . F 3 159.238 141.164 83.105 1 73 ? C7 40F 901 B 1 HETATM 3 O O2 40F . . . F 3 163.405 137.974 80.582 1 73 ? O2 40F 901 B 1 HETATM 4 C C6 40F . . . F 3 160.533 141.679 83.113 1 73 ? C6 40F 901 B 1 HETATM 5 C C1 40F . . . F 3 159.425 139.566 82.802 1 73 ? C1 40F 901 B 1 HETATM 6 C C5 40F . . . F 3 161.508 140.615 82.307 1 73 ? C5 40F 901 B 1 HETATM 7 C C4 40F . . . F 3 162.952 139.113 80.878 1 73 ? C4 40F 901 B 1 HETATM 8 C C3 40F . . . F 3 162.058 139.286 82.116 1 73 ? C3 40F 901 B 1 HETATM 9 C C2 40F . . . F 3 160.657 139.525 81.847 1 73 ? C2 40F 901 B 1 HETATM 10 O O3 40F . . . F 3 163.24 140.113 80.164 1 73 ? O3 40F 901 B 1 HETATM 11 N N 40F . . . F 3 159.717 138.838 84.044 1 73 ? N 40F 901 B 1 HETATM 12 C C 40F . . . F 3 158.274 139.04 82.17 1 73 ? C 40F 901 B 1 HETATM 13 O O 40F . . . F 3 157.775 139.632 81.172 1 73 ? O 40F 901 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #