data_7EPF # _model_server_result.job_id Glp2oanQPJUkIImVKhzLxw _model_server_result.datetime_utc '2025-04-16 13:29:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7epf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 7EPF # _exptl.entry_id 7EPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EPF _cell.length_a 58.501 _cell.length_b 86.44 _cell.length_c 99.815 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (y,z,x)' _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 86 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 632 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 314 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 721 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.039 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 7EPF _atom_sites.fract_transf_matrix[1][1] 0.017094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 1201 1200 FMN FMN . C 3 J9U A 1 1202 1 J9U LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 43.184 13.061 32.863 1 105.08 ? N1 FMN 1201 A 1 HETATM 2 C C2 FMN . . . B 2 43.837 12.404 31.86 1 103.34 ? C2 FMN 1201 A 1 HETATM 3 O O2 FMN . . . B 2 43.219 11.96 30.89 1 103.29 ? O2 FMN 1201 A 1 HETATM 4 N N3 FMN . . . B 2 45.233 12.298 31.886 1 101.4 ? N3 FMN 1201 A 1 HETATM 5 C C4 FMN . . . B 2 46.069 12.843 32.848 1 101.54 ? C4 FMN 1201 A 1 HETATM 6 O O4 FMN . . . B 2 47.29 12.776 32.722 1 101.34 ? O4 FMN 1201 A 1 HETATM 7 C C4A FMN . . . B 2 45.37 13.548 33.908 1 103.28 ? C4A FMN 1201 A 1 HETATM 8 N N5 FMN . . . B 2 46.083 14.15 34.824 1 104.48 ? N5 FMN 1201 A 1 HETATM 9 C C5A FMN . . . B 2 45.414 14.946 35.75 1 104.15 ? C5A FMN 1201 A 1 HETATM 10 C C6 FMN . . . B 2 46.168 15.678 36.673 1 101.75 ? C6 FMN 1201 A 1 HETATM 11 C C7 FMN . . . B 2 45.565 16.56 37.566 1 101.74 ? C7 FMN 1201 A 1 HETATM 12 C C7M FMN . . . B 2 46.429 17.394 38.48 1 101.06 ? C7M FMN 1201 A 1 HETATM 13 C C8 FMN . . . B 2 44.157 16.696 37.557 1 102.35 ? C8 FMN 1201 A 1 HETATM 14 C C8M FMN . . . B 2 43.457 17.676 38.463 1 103.56 ? C8M FMN 1201 A 1 HETATM 15 C C9 FMN . . . B 2 43.404 15.949 36.659 1 100.63 ? C9 FMN 1201 A 1 HETATM 16 C C9A FMN . . . B 2 44.009 15.08 35.751 1 101.86 ? C9A FMN 1201 A 1 HETATM 17 N N10 FMN . . . B 2 43.269 14.364 34.776 1 100.21 ? N10 FMN 1201 A 1 HETATM 18 C C10 FMN . . . B 2 43.907 13.613 33.83 1 103.57 ? C10 FMN 1201 A 1 HETATM 19 C C1' FMN . . . B 2 41.794 14.4 34.759 1 97.75 ? C1' FMN 1201 A 1 HETATM 20 C C2' FMN . . . B 2 41.099 13.621 35.872 1 97.66 ? C2' FMN 1201 A 1 HETATM 21 O O2' FMN . . . B 2 41.392 12.225 35.771 1 95.67 ? O2' FMN 1201 A 1 HETATM 22 C C3' FMN . . . B 2 39.599 13.927 35.84 1 99.78 ? C3' FMN 1201 A 1 HETATM 23 O O3' FMN . . . B 2 39.4 15.155 36.535 1 101.6 ? O3' FMN 1201 A 1 HETATM 24 C C4' FMN . . . B 2 38.627 12.872 36.374 1 101.63 ? C4' FMN 1201 A 1 HETATM 25 O O4' FMN . . . B 2 37.309 13.124 35.883 1 100.01 ? O4' FMN 1201 A 1 HETATM 26 C C5' FMN . . . B 2 38.63 12.71 37.879 1 104.23 ? C5' FMN 1201 A 1 HETATM 27 O O5' FMN . . . B 2 37.933 11.482 38.182 1 106.65 ? O5' FMN 1201 A 1 HETATM 28 P P FMN . . . B 2 37.807 10.938 39.696 1 107.17 ? P FMN 1201 A 1 HETATM 29 O O1P FMN . . . B 2 39.123 10.997 40.401 1 108.14 ? O1P FMN 1201 A 1 HETATM 30 O O2P FMN . . . B 2 36.738 11.789 40.368 1 108.35 ? O2P FMN 1201 A 1 HETATM 31 O O3P FMN . . . B 2 37.245 9.563 39.6 1 104.13 ? O3P FMN 1201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #