data_7EPF # _model_server_result.job_id -7QcMplGxokxM3O1jTlTMQ _model_server_result.datetime_utc '2025-04-02 14:20:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7epf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1202}' # _entry.id 7EPF # _exptl.entry_id 7EPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (8~{R})-4-[2,4-bis(fluoranyl)phenyl]-8-methyl-7-[(2-methylpyrazol-3-yl)methyl]-6,8-dihydro-5~{H}-1,7-naphthyridine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EPF _cell.length_a 58.501 _cell.length_b 86.44 _cell.length_c 99.815 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (y,z,x)' _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 86 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 632 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 314 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 721 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.039 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H21 F2 N5 O' _chem_comp.formula_weight 397.421 _chem_comp.id J9U _chem_comp.mon_nstd_flag . _chem_comp.name (8~{R})-4-[2,4-bis(fluoranyl)phenyl]-8-methyl-7-[(2-methylpyrazol-3-yl)methyl]-6,8-dihydro-5~{H}-1,7-naphthyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C4 J9U sing 225 n n N3 C19 J9U doub 226 n y N3 N4 J9U sing 227 n y C4 O J9U doub 228 n n C4 C3 J9U sing 229 n n C20 N4 J9U sing 230 n n C19 C18 J9U sing 231 n y N4 C17 J9U sing 232 n y C3 N J9U doub 233 n y C3 C5 J9U sing 234 n y N C2 J9U sing 235 n y C18 C17 J9U doub 236 n y C17 C16 J9U sing 237 n n C5 C6 J9U doub 238 n y C2 C1 J9U sing 239 n n C2 C13 J9U doub 240 n y C1 N2 J9U sing 241 n n C1 C J9U sing 242 n n C6 C13 J9U sing 243 n y C6 C7 J9U sing 244 n n F1 C12 J9U sing 245 n n N2 C16 J9U sing 246 n n N2 C15 J9U sing 247 n n C13 C14 J9U sing 248 n n C12 C7 J9U doub 249 n y C12 C11 J9U sing 250 n y C7 C8 J9U sing 251 n y C14 C15 J9U sing 252 n n C11 C10 J9U doub 253 n y C8 C9 J9U doub 254 n y C10 C9 J9U sing 255 n y C10 F J9U sing 256 n n N1 H1 J9U sing 257 n n N1 H2 J9U sing 258 n n C5 H3 J9U sing 259 n n C8 H4 J9U sing 260 n n C15 H5 J9U sing 261 n n C15 H6 J9U sing 262 n n C20 H7 J9U sing 263 n n C20 H8 J9U sing 264 n n C20 H9 J9U sing 265 n n C H10 J9U sing 266 n n C H11 J9U sing 267 n n C H12 J9U sing 268 n n C1 H13 J9U sing 269 n n C11 H14 J9U sing 270 n n C14 H15 J9U sing 271 n n C14 H16 J9U sing 272 n n C16 H17 J9U sing 273 n n C16 H18 J9U sing 274 n n C18 H19 J9U sing 275 n n C19 H20 J9U sing 276 n n C9 H21 J9U sing 277 n n # _atom_sites.entry_id 7EPF _atom_sites.fract_transf_matrix[1][1] 0.017094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 1201 1200 FMN FMN . C 3 J9U A 1 1202 1 J9U LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 J9U . . . C 3 17.681 -47.696 38.903 1 92.63 ? N1 J9U 1202 A 1 HETATM 2 N N3 J9U . . . C 3 15.855 -55.19 39.642 1 112.47 ? N3 J9U 1202 A 1 HETATM 3 C C4 J9U . . . C 3 17.196 -46.944 39.942 1 94.38 ? C4 J9U 1202 A 1 HETATM 4 C C5 J9U . . . C 3 15.465 -46.982 41.724 1 92.61 ? C5 J9U 1202 A 1 HETATM 5 C C6 J9U . . . C 3 14.769 -47.67 42.713 1 90.35 ? C6 J9U 1202 A 1 HETATM 6 C C7 J9U . . . C 3 13.841 -46.864 43.508 1 87.15 ? C7 J9U 1202 A 1 HETATM 7 C C8 J9U . . . C 3 14.367 -45.869 44.365 1 84.72 ? C8 J9U 1202 A 1 HETATM 8 C C10 J9U . . . C 3 12.111 -45.315 45.039 1 82.63 ? C10 J9U 1202 A 1 HETATM 9 C C13 J9U . . . C 3 15.023 -49.063 42.941 1 91.05 ? C13 J9U 1202 A 1 HETATM 10 C C15 J9U . . . C 3 14.824 -51.316 44.18 1 93.55 ? C15 J9U 1202 A 1 HETATM 11 C C17 J9U . . . C 3 15.882 -54.16 41.719 1 109.25 ? C17 J9U 1202 A 1 HETATM 12 C C20 J9U . . . C 3 13.766 -53.967 40.187 1 108.88 ? C20 J9U 1202 A 1 HETATM 13 N N J9U . . . C 3 16.716 -48.991 41.133 1 92.44 ? N J9U 1202 A 1 HETATM 14 C C J9U . . . C 3 17.78 -51.276 42.89 1 90.47 ? C J9U 1202 A 1 HETATM 15 O O J9U . . . C 3 17.372 -45.727 40.013 1 96.28 ? O J9U 1202 A 1 HETATM 16 C C1 J9U . . . C 3 16.389 -51.166 42.194 1 92.72 ? C1 J9U 1202 A 1 HETATM 17 C C11 J9U . . . C 3 11.55 -46.279 44.199 1 83.53 ? C11 J9U 1202 A 1 HETATM 18 C C12 J9U . . . C 3 12.428 -47.06 43.447 1 86.15 ? C12 J9U 1202 A 1 HETATM 19 C C14 J9U . . . C 3 14.296 -49.855 44.031 1 91.53 ? C14 J9U 1202 A 1 HETATM 20 C C16 J9U . . . C 3 15.363 -53.454 42.964 1 102.94 ? C16 J9U 1202 A 1 HETATM 21 C C18 J9U . . . C 3 17.129 -54.778 41.521 1 110.57 ? C18 J9U 1202 A 1 HETATM 22 C C19 J9U . . . C 3 17.069 -55.406 40.241 1 111.98 ? C19 J9U 1202 A 1 HETATM 23 C C2 J9U . . . C 3 16.025 -49.674 42.095 1 92.47 ? C2 J9U 1202 A 1 HETATM 24 C C3 J9U . . . C 3 16.423 -47.682 40.979 1 93.62 ? C3 J9U 1202 A 1 HETATM 25 C C9 J9U . . . C 3 13.501 -45.094 45.144 1 83.45 ? C9 J9U 1202 A 1 HETATM 26 F F J9U . . . C 3 11.3 -44.601 45.769 1 83.11 ? F J9U 1202 A 1 HETATM 27 F F1 J9U . . . C 3 11.905 -48.041 42.724 1 88.88 ? F1 J9U 1202 A 1 HETATM 28 N N2 J9U . . . C 3 15.282 -51.943 42.885 1 95.41 ? N2 J9U 1202 A 1 HETATM 29 N N4 J9U . . . C 3 15.127 -54.427 40.526 1 111.14 ? N4 J9U 1202 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 29 #