data_7EPM # _model_server_result.job_id vBOBRlldoGzkgX42JDtDOA _model_server_result.datetime_utc '2024-11-22 23:59:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7epm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7EPM # _exptl.entry_id 7EPM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7EPM _cell.length_a 177.891 _cell.length_b 177.891 _cell.length_c 179.21 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EPM _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -29.868333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 251 n n PA O2A NAD sing 252 n n PA O5B NAD sing 253 n n PA O3 NAD sing 254 n n O2A HOA2 NAD sing 255 n n O5B C5B NAD sing 256 n n C5B C4B NAD sing 257 n n C5B H51A NAD sing 258 n n C5B H52A NAD sing 259 n n C4B O4B NAD sing 260 n n C4B C3B NAD sing 261 n n C4B H4B NAD sing 262 n n O4B C1B NAD sing 263 n n C3B O3B NAD sing 264 n n C3B C2B NAD sing 265 n n C3B H3B NAD sing 266 n n O3B HO3A NAD sing 267 n n C2B O2B NAD sing 268 n n C2B C1B NAD sing 269 n n C2B H2B NAD sing 270 n n O2B HO2A NAD sing 271 n n C1B N9A NAD sing 272 n n C1B H1B NAD sing 273 n n N9A C8A NAD sing 274 n y N9A C4A NAD sing 275 n y C8A N7A NAD doub 276 n y C8A H8A NAD sing 277 n n N7A C5A NAD sing 278 n y C5A C6A NAD sing 279 n y C5A C4A NAD doub 280 n y C6A N6A NAD sing 281 n n C6A N1A NAD doub 282 n y N6A H61A NAD sing 283 n n N6A H62A NAD sing 284 n n N1A C2A NAD sing 285 n y C2A N3A NAD doub 286 n y C2A H2A NAD sing 287 n n N3A C4A NAD sing 288 n y O3 PN NAD sing 289 n n PN O1N NAD doub 290 n n PN O2N NAD sing 291 n n PN O5D NAD sing 292 n n O5D C5D NAD sing 293 n n C5D C4D NAD sing 294 n n C5D H51N NAD sing 295 n n C5D H52N NAD sing 296 n n C4D O4D NAD sing 297 n n C4D C3D NAD sing 298 n n C4D H4D NAD sing 299 n n O4D C1D NAD sing 300 n n C3D O3D NAD sing 301 n n C3D C2D NAD sing 302 n n C3D H3D NAD sing 303 n n O3D HO3N NAD sing 304 n n C2D O2D NAD sing 305 n n C2D C1D NAD sing 306 n n C2D H2D NAD sing 307 n n O2D HO2N NAD sing 308 n n C1D N1N NAD sing 309 n n C1D H1D NAD sing 310 n n N1N C2N NAD sing 311 n y N1N C6N NAD doub 312 n y C2N C3N NAD doub 313 n y C2N H2N NAD sing 314 n n C3N C7N NAD sing 315 n n C3N C4N NAD sing 316 n y C7N O7N NAD doub 317 n n C7N N7N NAD sing 318 n n N7N H71N NAD sing 319 n n N7N H72N NAD sing 320 n n C4N C5N NAD doub 321 n y C4N H4N NAD sing 322 n n C5N C6N NAD sing 323 n y C5N H5N NAD sing 324 n n C6N H6N NAD sing 325 n n # _atom_sites.entry_id 7EPM _atom_sites.fract_transf_matrix[1][1] 0.005621 _atom_sites.fract_transf_matrix[1][2] 0.003246 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006491 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00558 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 J9X A 1 401 1002 J9X EAA . D 3 NAD A 1 402 1001 NAD NAD . E 4 SO4 A 1 403 9 SO4 SO4 . F 4 SO4 A 1 404 10 SO4 SO4 . G 4 SO4 A 1 405 11 SO4 SO4 . H 2 J9X B 1 401 1002 J9X EAA . I 3 NAD B 1 402 1001 NAD NAD . J 4 SO4 B 1 403 1 SO4 SO4 . K 4 SO4 B 1 404 2 SO4 SO4 . L 4 SO4 B 1 405 5 SO4 SO4 . M 4 SO4 B 1 406 7 SO4 SO4 . N 4 SO4 B 1 407 8 SO4 SO4 . O 4 SO4 B 1 408 12 SO4 SO4 . P 5 HOH A 1 501 6 HOH HOH . P 5 HOH A 2 502 3 HOH HOH . P 5 HOH A 3 503 13 HOH HOH . P 5 HOH A 4 504 11 HOH HOH . P 5 HOH A 5 505 10 HOH HOH . P 5 HOH A 6 506 1 HOH HOH . P 5 HOH A 7 507 5 HOH HOH . P 5 HOH A 8 508 4 HOH HOH . P 5 HOH A 9 509 15 HOH HOH . P 5 HOH A 10 510 16 HOH HOH . P 5 HOH A 11 511 9 HOH HOH . P 5 HOH A 12 512 7 HOH HOH . P 5 HOH A 13 513 25 HOH HOH . P 5 HOH A 14 514 12 HOH HOH . P 5 HOH A 15 515 8 HOH HOH . Q 5 HOH B 1 501 17 HOH HOH . Q 5 HOH B 2 502 21 HOH HOH . Q 5 HOH B 3 503 23 HOH HOH . Q 5 HOH B 4 504 22 HOH HOH . Q 5 HOH B 5 505 18 HOH HOH . Q 5 HOH B 6 506 2 HOH HOH . Q 5 HOH B 7 507 14 HOH HOH . Q 5 HOH B 8 508 20 HOH HOH . Q 5 HOH B 9 509 19 HOH HOH . Q 5 HOH B 10 510 26 HOH HOH . Q 5 HOH B 11 511 27 HOH HOH . Q 5 HOH B 12 512 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 3 -83.486 44.29 -6.807 1 33.53 ? PA NAD 402 A 1 HETATM 2 O O1A NAD . . . D 3 -82.712 44.434 -8.055 1 38.45 ? O1A NAD 402 A 1 HETATM 3 O O2A NAD . . . D 3 -84.717 45.071 -6.588 1 38.58 ? O2A NAD 402 A 1 HETATM 4 O O5B NAD . . . D 3 -84.036 42.597 -6.589 1 37.64 ? O5B NAD 402 A 1 HETATM 5 C C5B NAD . . . D 3 -83.613 41.622 -5.738 1 41.73 ? C5B NAD 402 A 1 HETATM 6 C C4B NAD . . . D 3 -84.569 40.409 -5.617 1 43.31 ? C4B NAD 402 A 1 HETATM 7 O O4B NAD . . . D 3 -85.123 40.067 -4.313 1 48.68 ? O4B NAD 402 A 1 HETATM 8 C C3B NAD . . . D 3 -85.86 40.639 -6.427 1 40.92 ? C3B NAD 402 A 1 HETATM 9 O O3B NAD . . . D 3 -85.629 40.194 -7.721 1 41.49 ? O3B NAD 402 A 1 HETATM 10 C C2B NAD . . . D 3 -86.961 39.783 -5.633 1 42.95 ? C2B NAD 402 A 1 HETATM 11 O O2B NAD . . . D 3 -87.735 39.017 -6.455 1 47.78 ? O2B NAD 402 A 1 HETATM 12 C C1B NAD . . . D 3 -86.109 39.108 -4.495 1 45.5 ? C1B NAD 402 A 1 HETATM 13 N N9A NAD . . . D 3 -86.986 38.54 -3.468 1 41.28 ? N9A NAD 402 A 1 HETATM 14 C C8A NAD . . . D 3 -87.996 39.157 -2.663 1 40.5 ? C8A NAD 402 A 1 HETATM 15 N N7A NAD . . . D 3 -88.566 38.244 -1.866 1 41.64 ? N7A NAD 402 A 1 HETATM 16 C C5A NAD . . . D 3 -87.946 36.988 -2.145 1 40.46 ? C5A NAD 402 A 1 HETATM 17 C C6A NAD . . . D 3 -88.112 35.641 -1.623 1 40.7 ? C6A NAD 402 A 1 HETATM 18 N N6A NAD . . . D 3 -89.04 35.346 -0.619 1 44.26 ? N6A NAD 402 A 1 HETATM 19 N N1A NAD . . . D 3 -87.329 34.619 -2.121 1 41.21 ? N1A NAD 402 A 1 HETATM 20 C C2A NAD . . . D 3 -86.411 34.968 -3.115 1 40.83 ? C2A NAD 402 A 1 HETATM 21 N N3A NAD . . . D 3 -86.181 36.169 -3.666 1 37.62 ? N3A NAD 402 A 1 HETATM 22 C C4A NAD . . . D 3 -86.979 37.186 -3.153 1 40.76 ? C4A NAD 402 A 1 HETATM 23 O O3 NAD . . . D 3 -82.477 44.54 -5.586 1 38.83 ? O3 NAD 402 A 1 HETATM 24 P PN NAD . . . D 3 -80.938 44.758 -5.789 1 75.49 ? PN NAD 402 A 1 HETATM 25 O O1N NAD . . . D 3 -80.511 46.105 -6.231 1 42.9 ? O1N NAD 402 A 1 HETATM 26 O O2N NAD . . . D 3 -80.144 43.553 -6.163 1 45.15 ? O2N NAD 402 A 1 HETATM 27 O O5D NAD . . . D 3 -80.42 44.965 -4.105 1 36.14 ? O5D NAD 402 A 1 HETATM 28 C C5D NAD . . . D 3 -80.319 43.886 -3.511 1 39.88 ? C5D NAD 402 A 1 HETATM 29 C C4D NAD . . . D 3 -80.392 44.087 -1.979 1 42.92 ? C4D NAD 402 A 1 HETATM 30 O O4D NAD . . . D 3 -79.119 44.056 -1.138 1 44.04 ? O4D NAD 402 A 1 HETATM 31 C C3D NAD . . . D 3 -80.899 45.435 -1.425 1 46 ? C3D NAD 402 A 1 HETATM 32 O O3D NAD . . . D 3 -81.312 45.227 -0.089 1 46.83 ? O3D NAD 402 A 1 HETATM 33 C C2D NAD . . . D 3 -79.674 46.383 -1.523 1 45.27 ? C2D NAD 402 A 1 HETATM 34 O O2D NAD . . . D 3 -79.679 47.476 -0.672 1 46.43 ? O2D NAD 402 A 1 HETATM 35 C C1D NAD . . . D 3 -78.517 45.505 -1.065 1 42.75 ? C1D NAD 402 A 1 HETATM 36 N N1N NAD . . . D 3 -77.048 45.847 -1.306 1 42.03 ? N1N NAD 402 A 1 HETATM 37 C C2N NAD . . . D 3 -76.073 45.552 -0.328 1 42.27 ? C2N NAD 402 A 1 HETATM 38 C C3N NAD . . . D 3 -74.753 45.914 -0.463 1 41.6 ? C3N NAD 402 A 1 HETATM 39 C C7N NAD . . . D 3 -73.628 45.58 0.529 1 43.74 ? C7N NAD 402 A 1 HETATM 40 O O7N NAD . . . D 3 -72.541 46.137 0.471 1 43.33 ? O7N NAD 402 A 1 HETATM 41 N N7N NAD . . . D 3 -73.834 44.649 1.526 1 45.12 ? N7N NAD 402 A 1 HETATM 42 C C4N NAD . . . D 3 -74.482 46.641 -1.616 1 45.38 ? C4N NAD 402 A 1 HETATM 43 C C5N NAD . . . D 3 -75.481 46.963 -2.54 1 47.21 ? C5N NAD 402 A 1 HETATM 44 C C6N NAD . . . D 3 -76.776 46.569 -2.33 1 44.3 ? C6N NAD 402 A 1 HETATM 45 H H51A NAD . . . D 3 -82.649 41.167 -5.984 1 52.17 ? H51A NAD 402 A 1 HETATM 46 H H52A NAD . . . D 3 -83.461 41.935 -4.7 1 52.17 ? H52A NAD 402 A 1 HETATM 47 H H4B NAD . . . D 3 -84.033 39.596 -6.214 1 54.07 ? H4B NAD 402 A 1 HETATM 48 H H3B NAD . . . D 3 -86.021 41.72 -6.274 1 51.2 ? H3B NAD 402 A 1 HETATM 49 H HO3A NAD . . . D 3 -84.735 40.458 -8.031 1 51.88 ? HO3A NAD 402 A 1 HETATM 50 H H2B NAD . . . D 3 -87.521 40.232 -4.761 1 53.63 ? H2B NAD 402 A 1 HETATM 51 H HO2A NAD . . . D 3 -87.298 38.982 -7.307 1 59.42 ? HO2A NAD 402 A 1 HETATM 52 H H1B NAD . . . D 3 -85.748 38.101 -4.876 1 56.69 ? H1B NAD 402 A 1 HETATM 53 H H8A NAD . . . D 3 -88.253 40.263 -2.716 1 50.69 ? H8A NAD 402 A 1 HETATM 54 H H61A NAD . . . D 3 -89.077 34.501 -0.04 1 55.2 ? H61A NAD 402 A 1 HETATM 55 H H62A NAD . . . D 3 -89.777 35.982 -0.328 1 55.2 ? H62A NAD 402 A 1 HETATM 56 H H2A NAD . . . D 3 -85.762 34.093 -3.513 1 51.08 ? H2A NAD 402 A 1 HETATM 57 H H51N NAD . . . D 3 -79.363 43.342 -3.788 1 49.94 ? H51N NAD 402 A 1 HETATM 58 H H52N NAD . . . D 3 -81.112 43.147 -3.845 1 49.94 ? H52N NAD 402 A 1 HETATM 59 H H4D NAD . . . D 3 -81.275 43.393 -1.811 1 53.59 ? H4D NAD 402 A 1 HETATM 60 H H3D NAD . . . D 3 -81.656 45.673 -2.194 1 57.28 ? H3D NAD 402 A 1 HETATM 61 H HO3N NAD . . . D 3 -80.929 44.395 0.276 1 58.29 ? HO3N NAD 402 A 1 HETATM 62 H H2D NAD . . . D 3 -79.395 46.623 -2.605 1 56.42 ? H2D NAD 402 A 1 HETATM 63 H HO2N NAD . . . D 3 -78.818 47.909 -0.672 1 57.81 ? HO2N NAD 402 A 1 HETATM 64 H H1D NAD . . . D 3 -78.358 46.298 -0.276 1 53.39 ? H1D NAD 402 A 1 HETATM 65 H H2N NAD . . . D 3 -76.433 45 0.574 1 52.81 ? H2N NAD 402 A 1 HETATM 66 H H71N NAD . . . D 3 -73.16 44.352 2.249 1 56.23 ? H71N NAD 402 A 1 HETATM 67 H H72N NAD . . . D 3 -74.688 44.129 1.673 1 56.23 ? H72N NAD 402 A 1 HETATM 68 H H4N NAD . . . D 3 -73.435 46.981 -1.816 1 56.54 ? H4N NAD 402 A 1 HETATM 69 H H5N NAD . . . D 3 -75.27 47.547 -3.477 1 58.74 ? H5N NAD 402 A 1 HETATM 70 H H6N NAD . . . D 3 -77.633 46.839 -3.004 1 55.25 ? H6N NAD 402 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 70 #