data_7EPM
#
_model_server_result.job_id            kLc5AcUd4TcrAff18X50bw 
_model_server_result.datetime_utc      '2024-11-23 00:42:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7epm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":402}' 
#
_entry.id    7EPM 
#
_exptl.entry_id    7EPM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7EPM 
_cell.length_a            177.891 
_cell.length_b            177.891 
_cell.length_c            179.21 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7EPM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    'P 61 2 (x,y,z+5/12)' 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -29.868333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 251 n n 
PA O2A NAD sing 252 n n 
PA O5B NAD sing 253 n n 
PA O3 NAD sing 254 n n 
O2A HOA2 NAD sing 255 n n 
O5B C5B NAD sing 256 n n 
C5B C4B NAD sing 257 n n 
C5B H51A NAD sing 258 n n 
C5B H52A NAD sing 259 n n 
C4B O4B NAD sing 260 n n 
C4B C3B NAD sing 261 n n 
C4B H4B NAD sing 262 n n 
O4B C1B NAD sing 263 n n 
C3B O3B NAD sing 264 n n 
C3B C2B NAD sing 265 n n 
C3B H3B NAD sing 266 n n 
O3B HO3A NAD sing 267 n n 
C2B O2B NAD sing 268 n n 
C2B C1B NAD sing 269 n n 
C2B H2B NAD sing 270 n n 
O2B HO2A NAD sing 271 n n 
C1B N9A NAD sing 272 n n 
C1B H1B NAD sing 273 n n 
N9A C8A NAD sing 274 n y 
N9A C4A NAD sing 275 n y 
C8A N7A NAD doub 276 n y 
C8A H8A NAD sing 277 n n 
N7A C5A NAD sing 278 n y 
C5A C6A NAD sing 279 n y 
C5A C4A NAD doub 280 n y 
C6A N6A NAD sing 281 n n 
C6A N1A NAD doub 282 n y 
N6A H61A NAD sing 283 n n 
N6A H62A NAD sing 284 n n 
N1A C2A NAD sing 285 n y 
C2A N3A NAD doub 286 n y 
C2A H2A NAD sing 287 n n 
N3A C4A NAD sing 288 n y 
O3 PN NAD sing 289 n n 
PN O1N NAD doub 290 n n 
PN O2N NAD sing 291 n n 
PN O5D NAD sing 292 n n 
O5D C5D NAD sing 293 n n 
C5D C4D NAD sing 294 n n 
C5D H51N NAD sing 295 n n 
C5D H52N NAD sing 296 n n 
C4D O4D NAD sing 297 n n 
C4D C3D NAD sing 298 n n 
C4D H4D NAD sing 299 n n 
O4D C1D NAD sing 300 n n 
C3D O3D NAD sing 301 n n 
C3D C2D NAD sing 302 n n 
C3D H3D NAD sing 303 n n 
O3D HO3N NAD sing 304 n n 
C2D O2D NAD sing 305 n n 
C2D C1D NAD sing 306 n n 
C2D H2D NAD sing 307 n n 
O2D HO2N NAD sing 308 n n 
C1D N1N NAD sing 309 n n 
C1D H1D NAD sing 310 n n 
N1N C2N NAD sing 311 n y 
N1N C6N NAD doub 312 n y 
C2N C3N NAD doub 313 n y 
C2N H2N NAD sing 314 n n 
C3N C7N NAD sing 315 n n 
C3N C4N NAD sing 316 n y 
C7N O7N NAD doub 317 n n 
C7N N7N NAD sing 318 n n 
N7N H71N NAD sing 319 n n 
N7N H72N NAD sing 320 n n 
C4N C5N NAD doub 321 n y 
C4N H4N NAD sing 322 n n 
C5N C6N NAD sing 323 n y 
C5N H5N NAD sing 324 n n 
C6N H6N NAD sing 325 n n 
#
_atom_sites.entry_id                     7EPM 
_atom_sites.fract_transf_matrix[1][1]    0.005621 
_atom_sites.fract_transf_matrix[1][2]    0.003246 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006491 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00558 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 J9X A 1 401 1002 J9X EAA . 
D 3 NAD A 1 402 1001 NAD NAD . 
E 4 SO4 A 1 403 9 SO4 SO4 . 
F 4 SO4 A 1 404 10 SO4 SO4 . 
G 4 SO4 A 1 405 11 SO4 SO4 . 
H 2 J9X B 1 401 1002 J9X EAA . 
I 3 NAD B 1 402 1001 NAD NAD . 
J 4 SO4 B 1 403 1 SO4 SO4 . 
K 4 SO4 B 1 404 2 SO4 SO4 . 
L 4 SO4 B 1 405 5 SO4 SO4 . 
M 4 SO4 B 1 406 7 SO4 SO4 . 
N 4 SO4 B 1 407 8 SO4 SO4 . 
O 4 SO4 B 1 408 12 SO4 SO4 . 
P 5 HOH A 1 501 6 HOH HOH . 
P 5 HOH A 2 502 3 HOH HOH . 
P 5 HOH A 3 503 13 HOH HOH . 
P 5 HOH A 4 504 11 HOH HOH . 
P 5 HOH A 5 505 10 HOH HOH . 
P 5 HOH A 6 506 1 HOH HOH . 
P 5 HOH A 7 507 5 HOH HOH . 
P 5 HOH A 8 508 4 HOH HOH . 
P 5 HOH A 9 509 15 HOH HOH . 
P 5 HOH A 10 510 16 HOH HOH . 
P 5 HOH A 11 511 9 HOH HOH . 
P 5 HOH A 12 512 7 HOH HOH . 
P 5 HOH A 13 513 25 HOH HOH . 
P 5 HOH A 14 514 12 HOH HOH . 
P 5 HOH A 15 515 8 HOH HOH . 
Q 5 HOH B 1 501 17 HOH HOH . 
Q 5 HOH B 2 502 21 HOH HOH . 
Q 5 HOH B 3 503 23 HOH HOH . 
Q 5 HOH B 4 504 22 HOH HOH . 
Q 5 HOH B 5 505 18 HOH HOH . 
Q 5 HOH B 6 506 2 HOH HOH . 
Q 5 HOH B 7 507 14 HOH HOH . 
Q 5 HOH B 8 508 20 HOH HOH . 
Q 5 HOH B 9 509 19 HOH HOH . 
Q 5 HOH B 10 510 26 HOH HOH . 
Q 5 HOH B 11 511 27 HOH HOH . 
Q 5 HOH B 12 512 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . I 3 -29.082 26.846 -15.777 1 45.69 ? PA NAD 402 B 1 
HETATM 2 O O1A NAD . . . I 3 -30.17 25.847 -15.644 1 48.77 ? O1A NAD 402 B 1 
HETATM 3 O O2A NAD . . . I 3 -27.669 26.418 -15.939 1 54.26 -1 O2A NAD 402 B 1 
HETATM 4 O O5B NAD . . . I 3 -29.462 27.814 -17.253 1 44.78 ? O5B NAD 402 B 1 
HETATM 5 C C5B NAD . . . I 3 -29.207 29.097 -17.587 1 45.39 ? C5B NAD 402 B 1 
HETATM 6 C C4B NAD . . . I 3 -28.978 29.313 -19.107 1 45.23 ? C4B NAD 402 B 1 
HETATM 7 O O4B NAD . . . I 3 -28.224 30.427 -19.478 1 45.25 ? O4B NAD 402 B 1 
HETATM 8 C C3B NAD . . . I 3 -28.176 28.153 -19.756 1 47.98 ? C3B NAD 402 B 1 
HETATM 9 O O3B NAD . . . I 3 -29.154 27.381 -20.392 1 44.24 ? O3B NAD 402 B 1 
HETATM 10 C C2B NAD . . . I 3 -27.171 28.793 -20.737 1 45.31 ? C2B NAD 402 B 1 
HETATM 11 O O2B NAD . . . I 3 -27.15 28.207 -21.979 1 45.86 ? O2B NAD 402 B 1 
HETATM 12 C C1B NAD . . . I 3 -27.681 30.247 -20.704 1 44.3 ? C1B NAD 402 B 1 
HETATM 13 N N9A NAD . . . I 3 -26.673 31.193 -21.192 1 42.21 ? N9A NAD 402 B 1 
HETATM 14 C C8A NAD . . . I 3 -25.327 31.367 -20.739 1 42.55 ? C8A NAD 402 B 1 
HETATM 15 N N7A NAD . . . I 3 -24.723 32.318 -21.441 1 45.64 ? N7A NAD 402 B 1 
HETATM 16 C C5A NAD . . . I 3 -25.668 32.804 -22.372 1 45.32 ? C5A NAD 402 B 1 
HETATM 17 C C6A NAD . . . I 3 -25.635 33.835 -23.402 1 50.21 ? C6A NAD 402 B 1 
HETATM 18 N N6A NAD . . . I 3 -24.508 34.602 -23.658 1 59.15 ? N6A NAD 402 B 1 
HETATM 19 N N1A NAD . . . I 3 -26.761 34.057 -24.158 1 53.09 ? N1A NAD 402 B 1 
HETATM 20 C C2A NAD . . . I 3 -27.872 33.255 -23.861 1 48.18 ? C2A NAD 402 B 1 
HETATM 21 N N3A NAD . . . I 3 -28.001 32.292 -22.938 1 41.77 ? N3A NAD 402 B 1 
HETATM 22 C C4A NAD . . . I 3 -26.871 32.085 -22.197 1 43.1 ? C4A NAD 402 B 1 
HETATM 23 O O3 NAD . . . I 3 -29.222 27.869 -14.537 1 46.41 ? O3 NAD 402 B 1 
HETATM 24 P PN NAD . . . I 3 -30.584 28.351 -13.969 1 39.16 ? PN NAD 402 B 1 
HETATM 25 O O1N NAD . . . I 3 -31.033 27.695 -12.729 1 42.92 -1 O1N NAD 402 B 1 
HETATM 26 O O2N NAD . . . I 3 -31.577 28.924 -14.916 1 42.72 ? O2N NAD 402 B 1 
HETATM 27 O O5D NAD . . . I 3 -29.991 29.829 -13.161 1 43.77 ? O5D NAD 402 B 1 
HETATM 28 C C5D NAD . . . I 3 -30.448 30.908 -13.635 1 43.97 ? C5D NAD 402 B 1 
HETATM 29 C C4D NAD . . . I 3 -29.65 32.155 -13.134 1 43.92 ? C4D NAD 402 B 1 
HETATM 30 O O4D NAD . . . I 3 -30.254 33.163 -12.195 1 45.44 ? O4D NAD 402 B 1 
HETATM 31 C C3D NAD . . . I 3 -28.437 31.791 -12.242 1 48.79 ? C3D NAD 402 B 1 
HETATM 32 O O3D NAD . . . I 3 -27.494 32.84 -12.258 1 51.7 ? O3D NAD 402 B 1 
HETATM 33 C C2D NAD . . . I 3 -29.088 31.574 -10.824 1 47.74 ? C2D NAD 402 B 1 
HETATM 34 O O2D NAD . . . I 3 -28.229 31.798 -9.755 1 47.1 ? O2D NAD 402 B 1 
HETATM 35 C C1D NAD . . . I 3 -30.162 32.652 -10.735 1 41.95 ? C1D NAD 402 B 1 
HETATM 36 N N1N NAD . . . I 3 -31.31 32.72 -9.765 1 41.68 ? N1N NAD 402 B 1 
HETATM 37 C C2N NAD . . . I 3 -31.736 33.958 -9.251 1 40.42 ? C2N NAD 402 B 1 
HETATM 38 C C3N NAD . . . I 3 -32.727 34.068 -8.298 1 39.9 ? C3N NAD 402 B 1 
HETATM 39 C C7N NAD . . . I 3 -33.278 35.405 -7.756 1 42.99 ? C7N NAD 402 B 1 
HETATM 40 O O7N NAD . . . I 3 -34.14 35.465 -6.897 1 43.87 ? O7N NAD 402 B 1 
HETATM 41 N N7N NAD . . . I 3 -32.803 36.581 -8.258 1 46.25 ? N7N NAD 402 B 1 
HETATM 42 C C4N NAD . . . I 3 -33.221 32.846 -7.852 1 42.49 ? C4N NAD 402 B 1 
HETATM 43 C C5N NAD . . . I 3 -32.735 31.634 -8.344 1 41.2 ? C5N NAD 402 B 1 
HETATM 44 C C6N NAD . . . I 3 -31.746 31.611 -9.293 1 40.91 ? C6N NAD 402 B 1 
HETATM 45 H H51A NAD . . . I 3 -29.99 29.818 -17.331 1 56.56 ? H51A NAD 402 B 1 
HETATM 46 H H52A NAD . . . I 3 -28.324 29.543 -17.119 1 56.56 ? H52A NAD 402 B 1 
HETATM 47 H H4B NAD . . . I 3 -30.003 29.136 -19.577 1 56.37 ? H4B NAD 402 B 1 
HETATM 48 H H3B NAD . . . I 3 -27.615 27.756 -18.892 1 59.66 ? H3B NAD 402 B 1 
HETATM 49 H HO3A NAD . . . I 3 -29.13 27.553 -21.365 1 55.17 ? HO3A NAD 402 B 1 
HETATM 50 H H2B NAD . . . I 3 -26.154 29.104 -20.357 1 56.46 ? H2B NAD 402 B 1 
HETATM 51 H HO2A NAD . . . I 3 -26.682 27.366 -21.887 1 57.12 ? HO2A NAD 402 B 1 
HETATM 52 H H1B NAD . . . I 3 -28.392 30.194 -21.588 1 55.25 ? H1B NAD 402 B 1 
HETATM 53 H H8A NAD . . . I 3 -24.87 30.761 -19.893 1 53.15 ? H8A NAD 402 B 1 
HETATM 54 H H61A NAD . . . I 3 -24.48 35.586 -23.921 1 73.07 ? H61A NAD 402 B 1 
HETATM 55 H H62A NAD . . . I 3 -23.561 34.241 -23.604 1 73.07 ? H62A NAD 402 B 1 
HETATM 56 H H2A NAD . . . I 3 -28.81 33.461 -24.512 1 59.91 ? H2A NAD 402 B 1 
HETATM 57 H H51N NAD . . . I 3 -31.548 31.034 -13.392 1 54.85 ? H51N NAD 402 B 1 
HETATM 58 H H52N NAD . . . I 3 -30.461 30.89 -14.769 1 54.85 ? H52N NAD 402 B 1 
HETATM 59 H H4D NAD . . . I 3 -29.235 32.501 -14.134 1 54.79 ? H4D NAD 402 B 1 
HETATM 60 H H3D NAD . . . I 3 -28.153 30.839 -12.726 1 60.63 ? H3D NAD 402 B 1 
HETATM 61 H HO3N NAD . . . I 3 -26.612 32.524 -12.016 1 64.12 ? HO3N NAD 402 B 1 
HETATM 62 H H2D NAD . . . I 3 -29.72 30.624 -10.763 1 59.37 ? H2D NAD 402 B 1 
HETATM 63 H HO2N NAD . . . I 3 -27.867 30.988 -9.435 1 58.61 ? HO2N NAD 402 B 1 
HETATM 64 H H1D NAD . . . I 3 -29.636 32.837 -9.752 1 52.42 ? H1D NAD 402 B 1 
HETATM 65 H H2N NAD . . . I 3 -31.223 34.861 -9.661 1 50.6 ? H2N NAD 402 B 1 
HETATM 66 H H71N NAD . . . I 3 -33.086 37.534 -7.984 1 57.58 ? H71N NAD 402 B 1 
HETATM 67 H H72N NAD . . . I 3 -32.093 36.665 -8.972 1 57.58 ? H72N NAD 402 B 1 
HETATM 68 H H4N NAD . . . I 3 -34.029 32.828 -7.078 1 53.08 ? H4N NAD 402 B 1 
HETATM 69 H H5N NAD . . . I 3 -33.125 30.64 -7.991 1 51.53 ? H5N NAD 402 B 1 
HETATM 70 H H6N NAD . . . I 3 -31.28 30.671 -9.695 1 51.18 ? H6N NAD 402 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           70 
#