data_7EPZ # _model_server_result.job_id vPEmW6HfN6j6O-OAAQ5QaA _model_server_result.datetime_utc '2024-12-27 00:54:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7epz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":603}' # _entry.id 7EPZ # _exptl.entry_id 7EPZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 703.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DISTEAROYL-SN-GLYCERO-3-PHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EPZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EPZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 701 NAG 3 n C NAG 2 C 2 NAG A 702 NAG 3 n D NAG 1 D 1 NAG A 703 NAG 3 n D NAG 2 D 2 NAG A 704 NAG 3 n E NAG 1 E 1 NAG A 705 NAG 3 n E NAG 2 E 2 NAG A 706 NAG 3 n F NAG 1 F 1 NAG A 707 NAG 3 n F NAG 2 F 2 NAG A 708 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 225 A CYS 211 1_555 B SG CYS 178 B CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 380 A ASN 366 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 396 A ASN 382 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 A ND2 ASN 439 A ASN 425 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 A ND2 ASN 521 A ASN 507 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C39 H76 O8 P -1' _chem_comp.formula_weight 703.99 _chem_comp.id PX8 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DISTEAROYL-SN-GLYCERO-3-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX8 sing 379 n n O2 P1 PX8 doub 380 n n P1 O3 PX8 sing 381 n n P1 O4 PX8 sing 382 n n O3 H1 PX8 sing 383 n n O4 C1 PX8 sing 384 n n C1 C2 PX8 sing 385 n n C1 H2 PX8 sing 386 n n C1 H3 PX8 sing 387 n n C2 C3 PX8 sing 388 n n C2 O7 PX8 sing 389 n n C2 H4 PX8 sing 390 n n C3 O5 PX8 sing 391 n n C3 H5 PX8 sing 392 n n C3 H6 PX8 sing 393 n n O5 C4 PX8 sing 394 n n C4 O6 PX8 doub 395 n n C4 C5 PX8 sing 396 n n C5 C6 PX8 sing 397 n n C5 H7 PX8 sing 398 n n C5 H8 PX8 sing 399 n n C6 C7 PX8 sing 400 n n C6 H9 PX8 sing 401 n n C6 H10 PX8 sing 402 n n C7 C8 PX8 sing 403 n n C7 H11 PX8 sing 404 n n C7 H12 PX8 sing 405 n n C8 C9 PX8 sing 406 n n C8 H13 PX8 sing 407 n n C8 H14 PX8 sing 408 n n C9 C10 PX8 sing 409 n n C9 H15 PX8 sing 410 n n C9 H16 PX8 sing 411 n n C10 C11 PX8 sing 412 n n C10 H17 PX8 sing 413 n n C10 H18 PX8 sing 414 n n C11 C12 PX8 sing 415 n n C11 H19 PX8 sing 416 n n C11 H20 PX8 sing 417 n n C12 C13 PX8 sing 418 n n C12 H21 PX8 sing 419 n n C12 H22 PX8 sing 420 n n C13 C14 PX8 sing 421 n n C13 H23 PX8 sing 422 n n C13 H24 PX8 sing 423 n n C14 C15 PX8 sing 424 n n C14 H25 PX8 sing 425 n n C14 H26 PX8 sing 426 n n C15 C16 PX8 sing 427 n n C15 H27 PX8 sing 428 n n C15 H28 PX8 sing 429 n n C16 C17 PX8 sing 430 n n C16 H29 PX8 sing 431 n n C16 H30 PX8 sing 432 n n C17 C18 PX8 sing 433 n n C17 H31 PX8 sing 434 n n C17 H32 PX8 sing 435 n n C18 C19 PX8 sing 436 n n C18 H33 PX8 sing 437 n n C18 H34 PX8 sing 438 n n C19 C20 PX8 sing 439 n n C19 H35 PX8 sing 440 n n C19 H36 PX8 sing 441 n n C20 C21 PX8 sing 442 n n C20 H37 PX8 sing 443 n n C20 H38 PX8 sing 444 n n C21 H39 PX8 sing 445 n n C21 H40 PX8 sing 446 n n C21 H41 PX8 sing 447 n n O7 C22 PX8 sing 448 n n C22 O8 PX8 doub 449 n n C22 C23 PX8 sing 450 n n C23 C24 PX8 sing 451 n n C23 H42 PX8 sing 452 n n C23 H43 PX8 sing 453 n n C24 C25 PX8 sing 454 n n C24 H44 PX8 sing 455 n n C24 H45 PX8 sing 456 n n C25 C26 PX8 sing 457 n n C25 H46 PX8 sing 458 n n C25 H47 PX8 sing 459 n n C26 C27 PX8 sing 460 n n C26 H48 PX8 sing 461 n n C26 H49 PX8 sing 462 n n C27 C28 PX8 sing 463 n n C27 H50 PX8 sing 464 n n C27 H51 PX8 sing 465 n n C28 C29 PX8 sing 466 n n C28 H52 PX8 sing 467 n n C28 H53 PX8 sing 468 n n C29 C30 PX8 sing 469 n n C29 H54 PX8 sing 470 n n C29 H55 PX8 sing 471 n n C30 C31 PX8 sing 472 n n C30 H56 PX8 sing 473 n n C30 H57 PX8 sing 474 n n C31 C32 PX8 sing 475 n n C31 H58 PX8 sing 476 n n C31 H59 PX8 sing 477 n n C32 C33 PX8 sing 478 n n C32 H60 PX8 sing 479 n n C32 H61 PX8 sing 480 n n C33 C34 PX8 sing 481 n n C33 H62 PX8 sing 482 n n C33 H63 PX8 sing 483 n n C34 C35 PX8 sing 484 n n C34 H64 PX8 sing 485 n n C34 H65 PX8 sing 486 n n C35 C36 PX8 sing 487 n n C35 H66 PX8 sing 488 n n C35 H67 PX8 sing 489 n n C36 C37 PX8 sing 490 n n C36 H68 PX8 sing 491 n n C36 H69 PX8 sing 492 n n C37 C38 PX8 sing 493 n n C37 H70 PX8 sing 494 n n C37 H71 PX8 sing 495 n n C38 C39 PX8 sing 496 n n C38 H72 PX8 sing 497 n n C38 H73 PX8 sing 498 n n C39 H74 PX8 sing 499 n n C39 H75 PX8 sing 500 n n C39 H76 PX8 sing 501 n n # _atom_sites.entry_id 7EPZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 J9O B 1 601 501 J9O LIG . H 5 PX8 B 1 602 601 PX8 3PH . I 5 PX8 B 1 603 602 PX8 3PH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX8 . . . I 5 129.236 127.729 109.282 1 103.5 ? O1 PX8 603 B 1 HETATM 2 O O2 PX8 . . . I 5 128.766 125.33 108.599 1 103.5 ? O2 PX8 603 B 1 HETATM 3 P P1 PX8 . . . I 5 129.594 126.271 109.434 1 103.5 ? P1 PX8 603 B 1 HETATM 4 O O3 PX8 . . . I 5 131.073 125.987 109.386 1 103.5 ? O3 PX8 603 B 1 HETATM 5 O O4 PX8 . . . I 5 129.173 125.918 110.944 1 103.5 ? O4 PX8 603 B 1 HETATM 6 C C1 PX8 . . . I 5 129.038 124.565 111.369 1 103.5 ? C1 PX8 603 B 1 HETATM 7 C C2 PX8 . . . I 5 128.9 124.538 112.884 1 103.5 ? C2 PX8 603 B 1 HETATM 8 C C3 PX8 . . . I 5 130.267 124.841 113.484 1 103.5 ? C3 PX8 603 B 1 HETATM 9 O O5 PX8 . . . I 5 130.197 124.935 114.907 1 103.5 ? O5 PX8 603 B 1 HETATM 10 C C4 PX8 . . . I 5 131.418 125.239 115.635 1 103.5 ? C4 PX8 603 B 1 HETATM 11 O O6 PX8 . . . I 5 132.391 125.606 114.995 1 103.5 ? O6 PX8 603 B 1 HETATM 12 C C5 PX8 . . . I 5 131.51 125.081 117.137 1 103.5 ? C5 PX8 603 B 1 HETATM 13 C C6 PX8 . . . I 5 130.46 125.895 117.884 1 103.5 ? C6 PX8 603 B 1 HETATM 14 C C7 PX8 . . . I 5 130.529 125.548 119.368 1 103.5 ? C7 PX8 603 B 1 HETATM 15 C C8 PX8 . . . I 5 129.382 126.123 120.196 1 103.5 ? C8 PX8 603 B 1 HETATM 16 C C9 PX8 . . . I 5 129.282 125.363 121.515 1 103.5 ? C9 PX8 603 B 1 HETATM 17 C C10 PX8 . . . I 5 128.596 126.147 122.63 1 103.5 ? C10 PX8 603 B 1 HETATM 18 C C11 PX8 . . . I 5 128.445 125.271 123.871 1 103.5 ? C11 PX8 603 B 1 HETATM 19 C C12 PX8 . . . I 5 128.015 126.054 125.108 1 103.5 ? C12 PX8 603 B 1 HETATM 20 C C13 PX8 . . . I 5 127.898 125.133 126.323 1 103.5 ? C13 PX8 603 B 1 HETATM 21 C C14 PX8 . . . I 5 127.59 125.887 127.619 1 103.5 ? C14 PX8 603 B 1 HETATM 22 C C15 PX8 . . . I 5 128.855 126.371 128.325 1 103.5 ? C15 PX8 603 B 1 HETATM 23 C C16 PX8 . . . I 5 128.538 127.176 129.582 1 103.5 ? C16 PX8 603 B 1 HETATM 24 C C17 PX8 . . . I 5 129.808 127.543 130.345 1 103.5 ? C17 PX8 603 B 1 HETATM 25 C C18 PX8 . . . I 5 129.479 128.157 131.701 1 103.5 ? C18 PX8 603 B 1 HETATM 26 C C19 PX8 . . . I 5 130.679 128.143 132.64 1 103.5 ? C19 PX8 603 B 1 HETATM 27 C C20 PX8 . . . I 5 131.22 126.734 132.845 1 103.5 ? C20 PX8 603 B 1 HETATM 28 C C21 PX8 . . . I 5 130.283 125.888 133.676 1 103.5 ? C21 PX8 603 B 1 HETATM 29 O O7 PX8 . . . I 5 127.982 125.556 113.267 1 103.5 ? O7 PX8 603 B 1 HETATM 30 C C22 PX8 . . . I 5 127.09 125.154 114.342 1 103.5 ? C22 PX8 603 B 1 HETATM 31 O O8 PX8 . . . I 5 127.333 124.146 114.982 1 103.5 ? O8 PX8 603 B 1 HETATM 32 C C23 PX8 . . . I 5 125.874 125.99 114.664 1 103.5 ? C23 PX8 603 B 1 HETATM 33 C C24 PX8 . . . I 5 125.382 125.685 116.076 1 103.5 ? C24 PX8 603 B 1 HETATM 34 C C25 PX8 . . . I 5 126.046 126.591 117.111 1 103.5 ? C25 PX8 603 B 1 HETATM 35 C C26 PX8 . . . I 5 125.492 126.326 118.508 1 103.5 ? C26 PX8 603 B 1 HETATM 36 C C27 PX8 . . . I 5 125.985 124.994 119.058 1 103.5 ? C27 PX8 603 B 1 HETATM 37 C C28 PX8 . . . I 5 125.14 124.515 120.235 1 103.5 ? C28 PX8 603 B 1 HETATM 38 C C29 PX8 . . . I 5 125.835 123.361 120.948 1 103.5 ? C29 PX8 603 B 1 HETATM 39 C C30 PX8 . . . I 5 125.018 122.833 122.12 1 103.5 ? C30 PX8 603 B 1 HETATM 40 C C31 PX8 . . . I 5 125.925 122.244 123.199 1 103.5 ? C31 PX8 603 B 1 HETATM 41 C C32 PX8 . . . I 5 125.142 121.475 124.261 1 103.5 ? C32 PX8 603 B 1 HETATM 42 C C33 PX8 . . . I 5 125.047 122.224 125.589 1 103.5 ? C33 PX8 603 B 1 HETATM 43 C C34 PX8 . . . I 5 123.918 123.252 125.611 1 103.5 ? C34 PX8 603 B 1 HETATM 44 C C35 PX8 . . . I 5 122.588 122.629 125.197 1 103.5 ? C35 PX8 603 B 1 HETATM 45 C C36 PX8 . . . I 5 121.427 123.607 125.345 1 103.5 ? C36 PX8 603 B 1 HETATM 46 C C37 PX8 . . . I 5 120.116 122.969 124.891 1 103.5 ? C37 PX8 603 B 1 HETATM 47 C C38 PX8 . . . I 5 118.942 123.928 125.044 1 103.5 ? C38 PX8 603 B 1 HETATM 48 C C39 PX8 . . . I 5 117.866 123.643 124.021 1 103.5 ? C39 PX8 603 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 1331 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #