data_7EQK # _model_server_result.job_id jNRMYKIY-_7GXDcV1VqTyg _model_server_result.datetime_utc '2024-11-24 09:43:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7eqk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":202}' # _entry.id 7EQK # _exptl.entry_id 7EQK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 217.221 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(E)-3-(1H-indol-3-yl)-2-oxidanyl-but-2-enoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7EQK _cell.length_a 66.782 _cell.length_b 66.782 _cell.length_c 116.336 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EQK _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 64 A HIS 64 1_555 C FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 C FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc3 A OE1 GLU 70 A GLU 70 1_555 C FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc4 A NE2 HIS 109 A HIS 109 1_555 C FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc5 C FE FE . A FE 201 1_555 D O2 GOA . A GOA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc6 C FE FE . A FE 201 1_555 D O GOA . A GOA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc7 B NE2 HIS 64 B HIS 64 1_555 F FE FE . B FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc8 B NE2 HIS 66 B HIS 66 1_555 F FE FE . B FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc9 B OE1 GLU 70 B GLU 70 1_555 F FE FE . B FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc10 B NE2 HIS 109 B HIS 109 1_555 F FE FE . B FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc11 F FE FE . B FE 201 1_555 G O05 JAX . B JAX 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc12 F FE FE . B FE 201 1_555 G O01 JAX . B JAX 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? # _chem_comp.formula 'C12 H11 N O3' _chem_comp.formula_weight 217.221 _chem_comp.id JAX _chem_comp.mon_nstd_flag . _chem_comp.name '(E)-3-(1H-indol-3-yl)-2-oxidanyl-but-2-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C09 N10 JAX sing 187 n y C09 C08 JAX doub 188 n y N10 C11 JAX sing 189 n y C07 C06 JAX sing 190 n n C11 C16 JAX sing 191 n y C11 C12 JAX doub 192 n y C08 C06 JAX sing 193 n n C08 C12 JAX sing 194 n y C06 C02 JAX doub 195 e n C16 C15 JAX doub 196 n y C12 C13 JAX sing 197 n y C02 O01 JAX sing 198 n n C02 C03 JAX sing 199 n n O05 C03 JAX doub 200 n n C03 O04 JAX sing 201 n n C15 C14 JAX sing 202 n y C13 C14 JAX doub 203 n y C15 H1 JAX sing 204 n n C16 H2 JAX sing 205 n n C07 H3 JAX sing 206 n n C07 H4 JAX sing 207 n n C07 H5 JAX sing 208 n n C09 H6 JAX sing 209 n n C13 H7 JAX sing 210 n n C14 H8 JAX sing 211 n n N10 H9 JAX sing 212 n n O01 H10 JAX sing 213 n n O04 H11 JAX sing 214 n n # _atom_sites.entry_id 7EQK _atom_sites.fract_transf_matrix[1][1] 0.014974 _atom_sites.fract_transf_matrix[1][2] 0.008645 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 201 2 FE FE . D 3 GOA A 1 202 1 GOA HAA . E 4 5RN A 1 203 1 5RN RIK . F 2 FE B 1 201 1 FE FE . G 5 JAX B 1 202 1 JAX TEI . H 6 HOH A 1 301 50 HOH HOH . H 6 HOH A 2 302 90 HOH HOH . H 6 HOH A 3 303 5 HOH HOH . H 6 HOH A 4 304 30 HOH HOH . H 6 HOH A 5 305 12 HOH HOH . H 6 HOH A 6 306 15 HOH HOH . H 6 HOH A 7 307 52 HOH HOH . H 6 HOH A 8 308 58 HOH HOH . H 6 HOH A 9 309 42 HOH HOH . H 6 HOH A 10 310 27 HOH HOH . H 6 HOH A 11 311 19 HOH HOH . H 6 HOH A 12 312 88 HOH HOH . H 6 HOH A 13 313 16 HOH HOH . H 6 HOH A 14 314 48 HOH HOH . H 6 HOH A 15 315 28 HOH HOH . H 6 HOH A 16 316 78 HOH HOH . H 6 HOH A 17 317 76 HOH HOH . H 6 HOH A 18 318 18 HOH HOH . H 6 HOH A 19 319 23 HOH HOH . H 6 HOH A 20 320 34 HOH HOH . H 6 HOH A 21 321 61 HOH HOH . H 6 HOH A 22 322 40 HOH HOH . H 6 HOH A 23 323 69 HOH HOH . H 6 HOH A 24 324 91 HOH HOH . H 6 HOH A 25 325 4 HOH HOH . H 6 HOH A 26 326 60 HOH HOH . H 6 HOH A 27 327 44 HOH HOH . H 6 HOH A 28 328 68 HOH HOH . H 6 HOH A 29 329 25 HOH HOH . H 6 HOH A 30 330 72 HOH HOH . H 6 HOH A 31 331 99 HOH HOH . H 6 HOH A 32 332 17 HOH HOH . H 6 HOH A 33 333 20 HOH HOH . H 6 HOH A 34 334 11 HOH HOH . H 6 HOH A 35 335 9 HOH HOH . H 6 HOH A 36 336 57 HOH HOH . H 6 HOH A 37 337 82 HOH HOH . H 6 HOH A 38 338 54 HOH HOH . H 6 HOH A 39 339 10 HOH HOH . H 6 HOH A 40 340 104 HOH HOH . H 6 HOH A 41 341 100 HOH HOH . H 6 HOH A 42 342 74 HOH HOH . H 6 HOH A 43 343 94 HOH HOH . H 6 HOH A 44 344 29 HOH HOH . H 6 HOH A 45 345 73 HOH HOH . H 6 HOH A 46 346 71 HOH HOH . H 6 HOH A 47 347 53 HOH HOH . H 6 HOH A 48 348 107 HOH HOH . H 6 HOH A 49 349 45 HOH HOH . H 6 HOH A 50 350 84 HOH HOH . H 6 HOH A 51 351 92 HOH HOH . H 6 HOH A 52 352 51 HOH HOH . I 6 HOH B 1 301 109 HOH HOH . I 6 HOH B 2 302 95 HOH HOH . I 6 HOH B 3 303 75 HOH HOH . I 6 HOH B 4 304 77 HOH HOH . I 6 HOH B 5 305 8 HOH HOH . I 6 HOH B 6 306 26 HOH HOH . I 6 HOH B 7 307 41 HOH HOH . I 6 HOH B 8 308 32 HOH HOH . I 6 HOH B 9 309 59 HOH HOH . I 6 HOH B 10 310 98 HOH HOH . I 6 HOH B 11 311 33 HOH HOH . I 6 HOH B 12 312 22 HOH HOH . I 6 HOH B 13 313 55 HOH HOH . I 6 HOH B 14 314 14 HOH HOH . I 6 HOH B 15 315 63 HOH HOH . I 6 HOH B 16 316 79 HOH HOH . I 6 HOH B 17 317 66 HOH HOH . I 6 HOH B 18 318 103 HOH HOH . I 6 HOH B 19 319 38 HOH HOH . I 6 HOH B 20 320 65 HOH HOH . I 6 HOH B 21 321 89 HOH HOH . I 6 HOH B 22 322 96 HOH HOH . I 6 HOH B 23 324 43 HOH HOH . I 6 HOH B 24 325 86 HOH HOH . I 6 HOH B 25 326 39 HOH HOH . I 6 HOH B 26 327 102 HOH HOH . I 6 HOH B 27 328 46 HOH HOH . I 6 HOH B 28 329 49 HOH HOH . I 6 HOH B 29 330 6 HOH HOH . I 6 HOH B 30 331 31 HOH HOH . I 6 HOH B 31 332 87 HOH HOH . I 6 HOH B 32 333 37 HOH HOH . I 6 HOH B 33 334 56 HOH HOH . I 6 HOH B 34 335 70 HOH HOH . I 6 HOH B 35 336 64 HOH HOH . I 6 HOH B 36 337 24 HOH HOH . I 6 HOH B 37 338 93 HOH HOH . I 6 HOH B 38 339 36 HOH HOH . I 6 HOH B 39 340 7 HOH HOH . I 6 HOH B 40 341 62 HOH HOH . I 6 HOH B 41 342 21 HOH HOH . I 6 HOH B 42 343 85 HOH HOH . I 6 HOH B 43 344 67 HOH HOH . I 6 HOH B 44 345 13 HOH HOH . I 6 HOH B 45 346 80 HOH HOH . I 6 HOH B 46 347 101 HOH HOH . I 6 HOH B 47 348 81 HOH HOH . I 6 HOH B 48 349 105 HOH HOH . I 6 HOH B 49 350 106 HOH HOH . I 6 HOH B 50 351 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 JAX . . . G 5 3.339 -32.976 14.392 1 38.05 ? C11 JAX 202 B 1 HETATM 2 C C12 JAX . . . G 5 2.203 -32.495 15.042 1 38.33 ? C12 JAX 202 B 1 HETATM 3 C C15 JAX . . . G 5 4.764 -31.717 15.872 1 38.52 ? C15 JAX 202 B 1 HETATM 4 C C16 JAX . . . G 5 4.627 -32.591 14.801 1 36.42 ? C16 JAX 202 B 1 HETATM 5 C C02 JAX . . . G 5 -1.232 -33.829 15.168 1 40.43 ? C02 JAX 202 B 1 HETATM 6 C C03 JAX . . . G 5 -0.768 -35.21 15.601 1 42.86 ? C03 JAX 202 B 1 HETATM 7 C C06 JAX . . . G 5 -0.424 -32.898 14.669 1 43.71 ? C06 JAX 202 B 1 HETATM 8 C C07 JAX . . . G 5 -1.068 -31.564 14.293 1 43.6 ? C07 JAX 202 B 1 HETATM 9 C C08 JAX . . . G 5 1.083 -33.085 14.404 1 37.95 ? C08 JAX 202 B 1 HETATM 10 C C09 JAX . . . G 5 1.625 -33.874 13.389 1 35.79 ? C09 JAX 202 B 1 HETATM 11 C C13 JAX . . . G 5 2.353 -31.617 16.12 1 39.46 ? C13 JAX 202 B 1 HETATM 12 C C14 JAX . . . G 5 3.633 -31.236 16.525 1 41.36 ? C14 JAX 202 B 1 HETATM 13 N N10 JAX . . . G 5 2.949 -33.791 13.405 1 35.72 ? N10 JAX 202 B 1 HETATM 14 O O01 JAX . . . G 5 -2.597 -33.552 15.338 1 41.03 ? O01 JAX 202 B 1 HETATM 15 O O04 JAX . . . G 5 0.325 -35.341 16.239 1 40.48 -1 O04 JAX 202 B 1 HETATM 16 O O05 JAX . . . G 5 -1.529 -36.195 15.353 1 34.85 ? O05 JAX 202 B 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #