data_7ERV # _model_server_result.job_id wOLZnvXHpsd_mo7LDHOa3A _model_server_result.datetime_utc '2024-10-11 02:20:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7erv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7ERV # _exptl.entry_id 7ERV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7ERV _cell.length_a 114.166 _cell.length_b 114.166 _cell.length_c 151.191 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ERV _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 57.083 -98.870656 25.1985 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 232 A HIS 232 1_555 A N LLP 233 A LLP 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C LLP 233 A LLP 233 1_555 A N MET 234 A MET 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 173 n y N1 C5 IMD sing 174 n y N1 HN1 IMD sing 175 n n C2 N3 IMD doub 176 n y C2 H2 IMD sing 177 n n N3 C4 IMD sing 178 n y N3 HN3 IMD sing 179 n n C4 C5 IMD doub 180 n y C4 H4 IMD sing 181 n n C5 H5 IMD sing 182 n n # _atom_sites.entry_id 7ERV _atom_sites.fract_transf_matrix[1][1] 0.008759 _atom_sites.fract_transf_matrix[1][2] 0.005057 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMD A 1 401 1 IMD IMD . C 3 HOH A 1 501 27 HOH HOH . C 3 HOH A 2 502 33 HOH HOH . C 3 HOH A 3 503 73 HOH HOH . C 3 HOH A 4 504 19 HOH HOH . C 3 HOH A 5 505 91 HOH HOH . C 3 HOH A 6 506 50 HOH HOH . C 3 HOH A 7 507 97 HOH HOH . C 3 HOH A 8 508 89 HOH HOH . C 3 HOH A 9 509 54 HOH HOH . C 3 HOH A 10 510 9 HOH HOH . C 3 HOH A 11 511 38 HOH HOH . C 3 HOH A 12 512 57 HOH HOH . C 3 HOH A 13 513 51 HOH HOH . C 3 HOH A 14 514 61 HOH HOH . C 3 HOH A 15 515 60 HOH HOH . C 3 HOH A 16 516 96 HOH HOH . C 3 HOH A 17 517 66 HOH HOH . C 3 HOH A 18 518 76 HOH HOH . C 3 HOH A 19 519 35 HOH HOH . C 3 HOH A 20 520 41 HOH HOH . C 3 HOH A 21 521 5 HOH HOH . C 3 HOH A 22 522 71 HOH HOH . C 3 HOH A 23 523 69 HOH HOH . C 3 HOH A 24 524 18 HOH HOH . C 3 HOH A 25 525 80 HOH HOH . C 3 HOH A 26 526 40 HOH HOH . C 3 HOH A 27 527 64 HOH HOH . C 3 HOH A 28 528 53 HOH HOH . C 3 HOH A 29 529 56 HOH HOH . C 3 HOH A 30 530 36 HOH HOH . C 3 HOH A 31 531 77 HOH HOH . C 3 HOH A 32 532 47 HOH HOH . C 3 HOH A 33 533 16 HOH HOH . C 3 HOH A 34 534 43 HOH HOH . C 3 HOH A 35 535 29 HOH HOH . C 3 HOH A 36 536 12 HOH HOH . C 3 HOH A 37 537 74 HOH HOH . C 3 HOH A 38 538 75 HOH HOH . C 3 HOH A 39 539 45 HOH HOH . C 3 HOH A 40 540 25 HOH HOH . C 3 HOH A 41 541 34 HOH HOH . C 3 HOH A 42 542 48 HOH HOH . C 3 HOH A 43 543 85 HOH HOH . C 3 HOH A 44 544 72 HOH HOH . C 3 HOH A 45 545 55 HOH HOH . C 3 HOH A 46 546 62 HOH HOH . C 3 HOH A 47 547 44 HOH HOH . C 3 HOH A 48 548 22 HOH HOH . C 3 HOH A 49 549 32 HOH HOH . C 3 HOH A 50 550 10 HOH HOH . C 3 HOH A 51 551 83 HOH HOH . C 3 HOH A 52 552 98 HOH HOH . C 3 HOH A 53 553 95 HOH HOH . C 3 HOH A 54 554 30 HOH HOH . C 3 HOH A 55 555 7 HOH HOH . C 3 HOH A 56 556 86 HOH HOH . C 3 HOH A 57 557 2 HOH HOH . C 3 HOH A 58 558 107 HOH HOH . C 3 HOH A 59 559 84 HOH HOH . C 3 HOH A 60 560 82 HOH HOH . C 3 HOH A 61 561 68 HOH HOH . C 3 HOH A 62 562 1 HOH HOH . C 3 HOH A 63 563 93 HOH HOH . C 3 HOH A 64 564 14 HOH HOH . C 3 HOH A 65 565 26 HOH HOH . C 3 HOH A 66 566 17 HOH HOH . C 3 HOH A 67 567 42 HOH HOH . C 3 HOH A 68 568 90 HOH HOH . C 3 HOH A 69 569 20 HOH HOH . C 3 HOH A 70 570 3 HOH HOH . C 3 HOH A 71 571 70 HOH HOH . C 3 HOH A 72 572 92 HOH HOH . C 3 HOH A 73 573 52 HOH HOH . C 3 HOH A 74 574 39 HOH HOH . C 3 HOH A 75 575 81 HOH HOH . C 3 HOH A 76 576 31 HOH HOH . C 3 HOH A 77 577 58 HOH HOH . C 3 HOH A 78 578 99 HOH HOH . C 3 HOH A 79 579 6 HOH HOH . C 3 HOH A 80 580 13 HOH HOH . C 3 HOH A 81 581 63 HOH HOH . C 3 HOH A 82 582 23 HOH HOH . C 3 HOH A 83 583 49 HOH HOH . C 3 HOH A 84 584 4 HOH HOH . C 3 HOH A 85 585 103 HOH HOH . C 3 HOH A 86 586 21 HOH HOH . C 3 HOH A 87 587 59 HOH HOH . C 3 HOH A 88 588 78 HOH HOH . C 3 HOH A 89 589 8 HOH HOH . C 3 HOH A 90 590 37 HOH HOH . C 3 HOH A 91 591 105 HOH HOH . C 3 HOH A 92 592 24 HOH HOH . C 3 HOH A 93 593 11 HOH HOH . C 3 HOH A 94 594 28 HOH HOH . C 3 HOH A 95 595 67 HOH HOH . C 3 HOH A 96 596 94 HOH HOH . C 3 HOH A 97 597 46 HOH HOH . C 3 HOH A 98 598 65 HOH HOH . C 3 HOH A 99 599 88 HOH HOH . C 3 HOH A 100 600 15 HOH HOH . C 3 HOH A 101 601 87 HOH HOH . C 3 HOH A 102 602 79 HOH HOH . C 3 HOH A 103 603 101 HOH HOH . C 3 HOH A 104 604 100 HOH HOH . C 3 HOH A 105 605 104 HOH HOH . C 3 HOH A 106 606 106 HOH HOH . C 3 HOH A 107 607 108 HOH HOH . C 3 HOH A 108 608 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . B 2 2.714 -53.266 26.759 1 64.48 ? N1 IMD 401 A 1 HETATM 2 C C2 IMD . . . B 2 2.239 -53.644 25.575 1 64 ? C2 IMD 401 A 1 HETATM 3 N N3 IMD . . . B 2 1.407 -52.697 25.179 1 65.14 ? N3 IMD 401 A 1 HETATM 4 C C4 IMD . . . B 2 1.283 -51.771 26.18 1 68.86 ? C4 IMD 401 A 1 HETATM 5 C C5 IMD . . . B 2 1.88 -52.306 27.252 1 70.43 ? C5 IMD 401 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #