data_7ESM
#
_model_server_result.job_id            dAdHHc5FAzGApQTmUHhc-A 
_model_server_result.datetime_utc      '2024-11-27 08:09:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7esm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":603}' 
#
_entry.id    7ESM 
#
_exptl.entry_id    7ESM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ESM 
_cell.length_a            56.19 
_cell.length_b            65.039 
_cell.length_c            107.714 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ESM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 520 NAG 
2 n B NAG 2 B 2 NAG A 521 NAG 
2 n B BMA 3 B 3 BMA A 522 BMA 
2 n B MAN 4 B 4 MAN A 523 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 249 A ASN 247 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? 
covale ? covale3 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale4 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
metalc ? metalc1 A O GLY 173 A GLY 171 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc2 A O ASP 200 A ASP 198 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc3 A OD1 ASP 200 A ASP 198 1_555 E NA NA . A NA 603 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.766 ? 
metalc ? metalc4 A O GLU 223 A GLU 221 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7ESM 
_atom_sites.fract_transf_matrix[1][1]    0.017797 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015375 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009284 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 RAM A 1 601 601 RAM RAM . 
D 4 ACT A 1 602 701 ACT ACT . 
E 5 NA A 1 603 2 NA NA . 
F 6 HOH A 1 701 182 HOH HOH . 
F 6 HOH A 2 702 169 HOH HOH . 
F 6 HOH A 3 703 208 HOH HOH . 
F 6 HOH A 4 704 210 HOH HOH . 
F 6 HOH A 5 705 6 HOH HOH . 
F 6 HOH A 6 706 80 HOH HOH . 
F 6 HOH A 7 707 23 HOH HOH . 
F 6 HOH A 8 708 189 HOH HOH . 
F 6 HOH A 9 709 135 HOH HOH . 
F 6 HOH A 10 710 33 HOH HOH . 
F 6 HOH A 11 711 162 HOH HOH . 
F 6 HOH A 12 712 47 HOH HOH . 
F 6 HOH A 13 713 131 HOH HOH . 
F 6 HOH A 14 714 83 HOH HOH . 
F 6 HOH A 15 715 42 HOH HOH . 
F 6 HOH A 16 716 51 HOH HOH . 
F 6 HOH A 17 717 38 HOH HOH . 
F 6 HOH A 18 718 124 HOH HOH . 
F 6 HOH A 19 719 164 HOH HOH . 
F 6 HOH A 20 720 157 HOH HOH . 
F 6 HOH A 21 721 22 HOH HOH . 
F 6 HOH A 22 722 93 HOH HOH . 
F 6 HOH A 23 723 45 HOH HOH . 
F 6 HOH A 24 724 72 HOH HOH . 
F 6 HOH A 25 725 97 HOH HOH . 
F 6 HOH A 26 726 19 HOH HOH . 
F 6 HOH A 27 727 106 HOH HOH . 
F 6 HOH A 28 728 174 HOH HOH . 
F 6 HOH A 29 729 213 HOH HOH . 
F 6 HOH A 30 730 48 HOH HOH . 
F 6 HOH A 31 731 190 HOH HOH . 
F 6 HOH A 32 732 104 HOH HOH . 
F 6 HOH A 33 733 10 HOH HOH . 
F 6 HOH A 34 734 94 HOH HOH . 
F 6 HOH A 35 735 54 HOH HOH . 
F 6 HOH A 36 736 175 HOH HOH . 
F 6 HOH A 37 737 184 HOH HOH . 
F 6 HOH A 38 738 46 HOH HOH . 
F 6 HOH A 39 739 173 HOH HOH . 
F 6 HOH A 40 740 100 HOH HOH . 
F 6 HOH A 41 741 139 HOH HOH . 
F 6 HOH A 42 742 50 HOH HOH . 
F 6 HOH A 43 743 171 HOH HOH . 
F 6 HOH A 44 744 202 HOH HOH . 
F 6 HOH A 45 745 187 HOH HOH . 
F 6 HOH A 46 746 66 HOH HOH . 
F 6 HOH A 47 747 62 HOH HOH . 
F 6 HOH A 48 748 158 HOH HOH . 
F 6 HOH A 49 749 29 HOH HOH . 
F 6 HOH A 50 750 126 HOH HOH . 
F 6 HOH A 51 751 44 HOH HOH . 
F 6 HOH A 52 752 73 HOH HOH . 
F 6 HOH A 53 753 13 HOH HOH . 
F 6 HOH A 54 754 25 HOH HOH . 
F 6 HOH A 55 755 2 HOH HOH . 
F 6 HOH A 56 756 89 HOH HOH . 
F 6 HOH A 57 757 9 HOH HOH . 
F 6 HOH A 58 758 133 HOH HOH . 
F 6 HOH A 59 759 18 HOH HOH . 
F 6 HOH A 60 760 159 HOH HOH . 
F 6 HOH A 61 761 3 HOH HOH . 
F 6 HOH A 62 762 55 HOH HOH . 
F 6 HOH A 63 763 119 HOH HOH . 
F 6 HOH A 64 764 40 HOH HOH . 
F 6 HOH A 65 765 143 HOH HOH . 
F 6 HOH A 66 766 67 HOH HOH . 
F 6 HOH A 67 767 127 HOH HOH . 
F 6 HOH A 68 768 26 HOH HOH . 
F 6 HOH A 69 769 141 HOH HOH . 
F 6 HOH A 70 770 87 HOH HOH . 
F 6 HOH A 71 771 153 HOH HOH . 
F 6 HOH A 72 772 110 HOH HOH . 
F 6 HOH A 73 773 95 HOH HOH . 
F 6 HOH A 74 774 102 HOH HOH . 
F 6 HOH A 75 775 192 HOH HOH . 
F 6 HOH A 76 776 204 HOH HOH . 
F 6 HOH A 77 777 75 HOH HOH . 
F 6 HOH A 78 778 86 HOH HOH . 
F 6 HOH A 79 779 32 HOH HOH . 
F 6 HOH A 80 780 30 HOH HOH . 
F 6 HOH A 81 781 147 HOH HOH . 
F 6 HOH A 82 782 77 HOH HOH . 
F 6 HOH A 83 783 88 HOH HOH . 
F 6 HOH A 84 784 41 HOH HOH . 
F 6 HOH A 85 785 122 HOH HOH . 
F 6 HOH A 86 786 11 HOH HOH . 
F 6 HOH A 87 787 49 HOH HOH . 
F 6 HOH A 88 788 21 HOH HOH . 
F 6 HOH A 89 789 57 HOH HOH . 
F 6 HOH A 90 790 128 HOH HOH . 
F 6 HOH A 91 791 112 HOH HOH . 
F 6 HOH A 92 792 193 HOH HOH . 
F 6 HOH A 93 793 205 HOH HOH . 
F 6 HOH A 94 794 17 HOH HOH . 
F 6 HOH A 95 795 64 HOH HOH . 
F 6 HOH A 96 796 99 HOH HOH . 
F 6 HOH A 97 797 60 HOH HOH . 
F 6 HOH A 98 798 53 HOH HOH . 
F 6 HOH A 99 799 24 HOH HOH . 
F 6 HOH A 100 800 31 HOH HOH . 
F 6 HOH A 101 801 120 HOH HOH . 
F 6 HOH A 102 802 20 HOH HOH . 
F 6 HOH A 103 803 8 HOH HOH . 
F 6 HOH A 104 804 134 HOH HOH . 
F 6 HOH A 105 805 116 HOH HOH . 
F 6 HOH A 106 806 206 HOH HOH . 
F 6 HOH A 107 807 82 HOH HOH . 
F 6 HOH A 108 808 151 HOH HOH . 
F 6 HOH A 109 809 191 HOH HOH . 
F 6 HOH A 110 810 61 HOH HOH . 
F 6 HOH A 111 811 149 HOH HOH . 
F 6 HOH A 112 812 123 HOH HOH . 
F 6 HOH A 113 813 78 HOH HOH . 
F 6 HOH A 114 814 136 HOH HOH . 
F 6 HOH A 115 815 215 HOH HOH . 
F 6 HOH A 116 816 132 HOH HOH . 
F 6 HOH A 117 817 15 HOH HOH . 
F 6 HOH A 118 818 12 HOH HOH . 
F 6 HOH A 119 819 79 HOH HOH . 
F 6 HOH A 120 820 113 HOH HOH . 
F 6 HOH A 121 821 166 HOH HOH . 
F 6 HOH A 122 822 201 HOH HOH . 
F 6 HOH A 123 823 200 HOH HOH . 
F 6 HOH A 124 824 108 HOH HOH . 
F 6 HOH A 125 825 65 HOH HOH . 
F 6 HOH A 126 826 101 HOH HOH . 
F 6 HOH A 127 827 34 HOH HOH . 
F 6 HOH A 128 828 71 HOH HOH . 
F 6 HOH A 129 829 90 HOH HOH . 
F 6 HOH A 130 830 68 HOH HOH . 
F 6 HOH A 131 831 74 HOH HOH . 
F 6 HOH A 132 832 92 HOH HOH . 
F 6 HOH A 133 833 63 HOH HOH . 
F 6 HOH A 134 834 35 HOH HOH . 
F 6 HOH A 135 835 198 HOH HOH . 
F 6 HOH A 136 836 163 HOH HOH . 
F 6 HOH A 137 837 14 HOH HOH . 
F 6 HOH A 138 838 207 HOH HOH . 
F 6 HOH A 139 839 7 HOH HOH . 
F 6 HOH A 140 840 109 HOH HOH . 
F 6 HOH A 141 841 117 HOH HOH . 
F 6 HOH A 142 842 114 HOH HOH . 
F 6 HOH A 143 843 56 HOH HOH . 
F 6 HOH A 144 844 81 HOH HOH . 
F 6 HOH A 145 845 105 HOH HOH . 
F 6 HOH A 146 846 183 HOH HOH . 
F 6 HOH A 147 847 188 HOH HOH . 
F 6 HOH A 148 848 103 HOH HOH . 
F 6 HOH A 149 849 144 HOH HOH . 
F 6 HOH A 150 850 85 HOH HOH . 
F 6 HOH A 151 851 28 HOH HOH . 
F 6 HOH A 152 852 43 HOH HOH . 
F 6 HOH A 153 853 179 HOH HOH . 
F 6 HOH A 154 854 155 HOH HOH . 
F 6 HOH A 155 855 125 HOH HOH . 
F 6 HOH A 156 856 130 HOH HOH . 
F 6 HOH A 157 857 195 HOH HOH . 
F 6 HOH A 158 858 154 HOH HOH . 
F 6 HOH A 159 859 58 HOH HOH . 
F 6 HOH A 160 860 180 HOH HOH . 
F 6 HOH A 161 861 172 HOH HOH . 
F 6 HOH A 162 862 194 HOH HOH . 
F 6 HOH A 163 863 96 HOH HOH . 
F 6 HOH A 164 864 39 HOH HOH . 
F 6 HOH A 165 865 168 HOH HOH . 
F 6 HOH A 166 866 118 HOH HOH . 
F 6 HOH A 167 867 76 HOH HOH . 
F 6 HOH A 168 868 27 HOH HOH . 
F 6 HOH A 169 869 129 HOH HOH . 
F 6 HOH A 170 870 196 HOH HOH . 
F 6 HOH A 171 871 177 HOH HOH . 
F 6 HOH A 172 872 121 HOH HOH . 
F 6 HOH A 173 873 167 HOH HOH . 
F 6 HOH A 174 874 84 HOH HOH . 
F 6 HOH A 175 875 214 HOH HOH . 
F 6 HOH A 176 876 212 HOH HOH . 
F 6 HOH A 177 877 161 HOH HOH . 
F 6 HOH A 178 878 4 HOH HOH . 
F 6 HOH A 179 879 197 HOH HOH . 
F 6 HOH A 180 880 107 HOH HOH . 
F 6 HOH A 181 881 185 HOH HOH . 
F 6 HOH A 182 882 91 HOH HOH . 
F 6 HOH A 183 883 148 HOH HOH . 
F 6 HOH A 184 884 181 HOH HOH . 
F 6 HOH A 185 885 98 HOH HOH . 
F 6 HOH A 186 886 186 HOH HOH . 
F 6 HOH A 187 887 160 HOH HOH . 
F 6 HOH A 188 888 5 HOH HOH . 
F 6 HOH A 189 889 145 HOH HOH . 
F 6 HOH A 190 890 211 HOH HOH . 
F 6 HOH A 191 891 70 HOH HOH . 
F 6 HOH A 192 892 140 HOH HOH . 
F 6 HOH A 193 893 152 HOH HOH . 
F 6 HOH A 194 894 146 HOH HOH . 
F 6 HOH A 195 895 142 HOH HOH . 
F 6 HOH A 196 896 199 HOH HOH . 
F 6 HOH A 197 897 115 HOH HOH . 
F 6 HOH A 198 898 36 HOH HOH . 
F 6 HOH A 199 899 69 HOH HOH . 
F 6 HOH A 200 900 178 HOH HOH . 
F 6 HOH A 201 901 221 HOH HOH . 
F 6 HOH A 202 902 203 HOH HOH . 
F 6 HOH A 203 903 137 HOH HOH . 
F 6 HOH A 204 904 220 HOH HOH . 
F 6 HOH A 205 905 176 HOH HOH . 
F 6 HOH A 206 906 223 HOH HOH . 
F 6 HOH A 207 907 209 HOH HOH . 
F 6 HOH A 208 908 52 HOH HOH . 
F 6 HOH A 209 909 216 HOH HOH . 
F 6 HOH A 210 910 37 HOH HOH . 
F 6 HOH A 211 911 170 HOH HOH . 
F 6 HOH A 212 912 156 HOH HOH . 
F 6 HOH A 213 913 138 HOH HOH . 
F 6 HOH A 214 914 219 HOH HOH . 
F 6 HOH A 215 915 150 HOH HOH . 
F 6 HOH A 216 916 59 HOH HOH . 
F 6 HOH A 217 917 218 HOH HOH . 
F 6 HOH A 218 918 111 HOH HOH . 
F 6 HOH A 219 919 165 HOH HOH . 
F 6 HOH A 220 920 217 HOH HOH . 
F 6 HOH A 221 921 16 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               13.904 
_atom_site.Cartn_y               34.395 
_atom_site.Cartn_z               7.146 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        13.77 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           603 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#