data_7ET7 # _model_server_result.job_id IQPsfLuI66YLVUS4uLpBIQ _model_server_result.datetime_utc '2024-11-17 00:39:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7et7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 7ET7 # _exptl.entry_id 7ET7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 108.031 _cell.angle_beta 103.54 _cell.angle_gamma 104.252 _cell.entry_id 7ET7 _cell.length_a 60.934 _cell.length_b 62.862 _cell.length_c 75.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ET7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 306 n n N HN1 SAH sing 307 n n N HN2 SAH sing 308 n n CA CB SAH sing 309 n n CA C SAH sing 310 n n CA HA SAH sing 311 n n CB CG SAH sing 312 n n CB HB1 SAH sing 313 n n CB HB2 SAH sing 314 n n CG SD SAH sing 315 n n CG HG1 SAH sing 316 n n CG HG2 SAH sing 317 n n SD C5' SAH sing 318 n n C O SAH doub 319 n n C OXT SAH sing 320 n n OXT HXT SAH sing 321 n n C5' C4' SAH sing 322 n n C5' "H5'1" SAH sing 323 n n C5' "H5'2" SAH sing 324 n n C4' O4' SAH sing 325 n n C4' C3' SAH sing 326 n n C4' H4' SAH sing 327 n n O4' C1' SAH sing 328 n n C3' O3' SAH sing 329 n n C3' C2' SAH sing 330 n n C3' H3' SAH sing 331 n n O3' HO3' SAH sing 332 n n C2' O2' SAH sing 333 n n C2' C1' SAH sing 334 n n C2' H2' SAH sing 335 n n O2' HO2' SAH sing 336 n n C1' N9 SAH sing 337 n n C1' H1' SAH sing 338 n n N9 C8 SAH sing 339 n y N9 C4 SAH sing 340 n y C8 N7 SAH doub 341 n y C8 H8 SAH sing 342 n n N7 C5 SAH sing 343 n y C5 C6 SAH sing 344 n y C5 C4 SAH doub 345 n y C6 N6 SAH sing 346 n n C6 N1 SAH doub 347 n y N6 HN61 SAH sing 348 n n N6 HN62 SAH sing 349 n n N1 C2 SAH sing 350 n y C2 N3 SAH doub 351 n y C2 H2 SAH sing 352 n n N3 C4 SAH sing 353 n y # _atom_sites.entry_id 7ET7 _atom_sites.fract_transf_matrix[1][1] 0.016411 _atom_sites.fract_transf_matrix[1][2] 0.004169 _atom_sites.fract_transf_matrix[1][3] 0.006055 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016413 _atom_sites.fract_transf_matrix[2][3] 0.006944 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SAH A 1 301 301 SAH SAH . F 3 JCU A 1 302 302 JCU UNL . G 2 SAH B 1 301 301 SAH SAH . H 3 JCU B 1 302 302 JCU UNL . I 2 SAH C 1 301 301 SAH SAH . J 3 JCU C 1 302 302 JCU UNL . K 2 SAH D 1 301 301 SAH SAH . L 3 JCU D 1 302 302 JCU UNL . M 4 HOH A 1 401 6 HOH HOH . M 4 HOH A 2 402 7 HOH HOH . M 4 HOH A 3 403 8 HOH HOH . M 4 HOH A 4 404 29 HOH HOH . M 4 HOH A 5 405 5 HOH HOH . M 4 HOH A 6 406 3 HOH HOH . M 4 HOH A 7 407 4 HOH HOH . M 4 HOH A 8 408 11 HOH HOH . M 4 HOH A 9 409 1 HOH HOH . M 4 HOH A 10 410 13 HOH HOH . M 4 HOH A 11 411 2 HOH HOH . M 4 HOH A 12 412 12 HOH HOH . M 4 HOH A 13 413 10 HOH HOH . N 4 HOH B 1 401 17 HOH HOH . N 4 HOH B 2 402 14 HOH HOH . N 4 HOH B 3 403 16 HOH HOH . N 4 HOH B 4 404 27 HOH HOH . N 4 HOH B 5 405 9 HOH HOH . N 4 HOH B 6 406 30 HOH HOH . N 4 HOH B 7 407 15 HOH HOH . O 4 HOH C 1 401 28 HOH HOH . O 4 HOH C 2 402 19 HOH HOH . O 4 HOH C 3 403 21 HOH HOH . O 4 HOH C 4 404 20 HOH HOH . O 4 HOH C 5 405 18 HOH HOH . O 4 HOH C 6 406 22 HOH HOH . P 4 HOH D 1 401 23 HOH HOH . P 4 HOH D 2 402 24 HOH HOH . P 4 HOH D 3 403 26 HOH HOH . P 4 HOH D 4 404 25 HOH HOH . P 4 HOH D 5 405 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . G 2 25.537 25.637 -0.159 0.91 38.46 0 N SAH 301 B 1 HETATM 2 C CA SAH . . . G 2 26.839 25.122 -0.672 0.91 36.75 0 CA SAH 301 B 1 HETATM 3 C CB SAH . . . G 2 28.004 25.464 0.269 0.91 36.17 0 CB SAH 301 B 1 HETATM 4 C CG SAH . . . G 2 27.681 25.312 1.741 0.91 33.86 0 CG SAH 301 B 1 HETATM 5 S SD SAH . . . G 2 29.175 25.228 2.754 0.91 33.63 0 SD SAH 301 B 1 HETATM 6 C C SAH . . . G 2 26.747 23.605 -0.872 0.91 34.76 0 C SAH 301 B 1 HETATM 7 O O SAH . . . G 2 27.719 22.927 -1.169 0.91 33.83 0 O SAH 301 B 1 HETATM 8 O OXT SAH . . . G 2 25.685 23.019 -0.747 0.91 36.31 0 OXT SAH 301 B 1 HETATM 9 C C5' SAH . . . G 2 28.911 26.527 3.991 0.93 35.6 0 C5' SAH 301 B 1 HETATM 10 C C4' SAH . . . G 2 28.742 27.92 3.424 0.93 36.47 0 C4' SAH 301 B 1 HETATM 11 O O4' SAH . . . G 2 28.159 28.783 4.426 0.93 37.51 0 O4' SAH 301 B 1 HETATM 12 C C3' SAH . . . G 2 30.034 28.6 2.968 0.93 37.29 0 C3' SAH 301 B 1 HETATM 13 O O3' SAH . . . G 2 29.926 28.988 1.603 0.93 37.7 0 O3' SAH 301 B 1 HETATM 14 C C2' SAH . . . G 2 30.197 29.778 3.937 0.93 36.58 0 C2' SAH 301 B 1 HETATM 15 O O2' SAH . . . G 2 30.769 30.923 3.347 0.93 36.24 0 O2' SAH 301 B 1 HETATM 16 C C1' SAH . . . G 2 28.759 30.05 4.347 0.93 36.97 0 C1' SAH 301 B 1 HETATM 17 N N9 SAH . . . G 2 28.615 30.719 5.637 0.91 39.53 0 N9 SAH 301 B 1 HETATM 18 C C8 SAH . . . G 2 29.317 30.467 6.792 0.91 38.71 0 C8 SAH 301 B 1 HETATM 19 N N7 SAH . . . G 2 28.968 31.237 7.793 0.91 38.69 0 N7 SAH 301 B 1 HETATM 20 C C5 SAH . . . G 2 27.965 32.045 7.274 0.91 38.47 0 C5 SAH 301 B 1 HETATM 21 C C6 SAH . . . G 2 27.179 33.069 7.838 0.91 37.85 0 C6 SAH 301 B 1 HETATM 22 N N6 SAH . . . G 2 27.275 33.469 9.102 0.91 38.27 0 N6 SAH 301 B 1 HETATM 23 N N1 SAH . . . G 2 26.263 33.669 7.043 0.91 37.83 0 N1 SAH 301 B 1 HETATM 24 C C2 SAH . . . G 2 26.156 33.265 5.772 0.91 38.23 0 C2 SAH 301 B 1 HETATM 25 N N3 SAH . . . G 2 26.839 32.319 5.136 0.91 39.31 0 N3 SAH 301 B 1 HETATM 26 C C4 SAH . . . G 2 27.737 31.735 5.947 0.91 39.31 0 C4 SAH 301 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #