data_7EV2 # _model_server_result.job_id D0XcFXeLzxBiyWOy7PpE0g _model_server_result.datetime_utc '2024-11-02 11:29:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ev2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7EV2 # _exptl.entry_id 7EV2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 291.733 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S)-5-[(1R)-1-(4-chloranyl-1H-indol-3-yl)ethyl]-2-(methylamino)-1,3-oxazol-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7EV2 _cell.length_a 61.548 _cell.length_b 61.548 _cell.length_c 335.48 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_775 -y+2,-x+2,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 61.548 106.604263 55.913333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O2G ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc2 B O2B ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc3 B O2A ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc4 C MG MG . A MG 402 1_555 E O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc5 C MG MG . A MG 402 1_555 E O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc6 C MG MG . A MG 402 1_555 E O HOH . A HOH 591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? # _chem_comp.formula 'C14 H14 Cl N3 O2' _chem_comp.formula_weight 291.733 _chem_comp.id JE0 _chem_comp.mon_nstd_flag . _chem_comp.name (5S)-5-[(1R)-1-(4-chloranyl-1H-indol-3-yl)ethyl]-2-(methylamino)-1,3-oxazol-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 JE0 doub 222 n y C11 C12 JE0 sing 223 n y CL C12 JE0 sing 224 n n C10 C9 JE0 sing 225 n y C12 C13 JE0 doub 226 n y C9 C8 JE0 doub 227 n y C13 C8 JE0 sing 228 n y C13 C6 JE0 sing 229 n y C8 N2 JE0 sing 230 n y C6 C1 JE0 sing 231 n n C6 C7 JE0 doub 232 n y O1 C5 JE0 doub 233 n n C1 C JE0 sing 234 n n C1 C2 JE0 sing 235 n n N2 C7 JE0 sing 236 n y C2 C5 JE0 sing 237 n n C2 O JE0 sing 238 n n C5 N1 JE0 sing 239 n n O C3 JE0 sing 240 n n N1 C3 JE0 doub 241 n n C3 N JE0 sing 242 n n N C4 JE0 sing 243 n n C10 H1 JE0 sing 244 n n C11 H2 JE0 sing 245 n n N H3 JE0 sing 246 n n C H4 JE0 sing 247 n n C H5 JE0 sing 248 n n C H6 JE0 sing 249 n n C1 H7 JE0 sing 250 n n C2 H8 JE0 sing 251 n n C4 H9 JE0 sing 252 n n C4 H10 JE0 sing 253 n n C4 H11 JE0 sing 254 n n C7 H12 JE0 sing 255 n n C9 H13 JE0 sing 256 n n N2 H14 JE0 sing 257 n n # _atom_sites.entry_id 7EV2 _atom_sites.fract_transf_matrix[1][1] 0.016247 _atom_sites.fract_transf_matrix[1][2] 0.00938 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018761 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 401 4 ATP ATP . C 3 MG A 1 402 1 MG MG . D 4 JE0 A 1 403 1 JE0 Y11 . E 5 HOH A 1 501 154 HOH HOH . E 5 HOH A 2 502 181 HOH HOH . E 5 HOH A 3 503 118 HOH HOH . E 5 HOH A 4 504 158 HOH HOH . E 5 HOH A 5 505 199 HOH HOH . E 5 HOH A 6 506 27 HOH HOH . E 5 HOH A 7 507 72 HOH HOH . E 5 HOH A 8 508 73 HOH HOH . E 5 HOH A 9 509 171 HOH HOH . E 5 HOH A 10 510 134 HOH HOH . E 5 HOH A 11 511 6 HOH HOH . E 5 HOH A 12 512 201 HOH HOH . E 5 HOH A 13 513 169 HOH HOH . E 5 HOH A 14 514 59 HOH HOH . E 5 HOH A 15 515 80 HOH HOH . E 5 HOH A 16 516 160 HOH HOH . E 5 HOH A 17 517 19 HOH HOH . E 5 HOH A 18 518 64 HOH HOH . E 5 HOH A 19 519 65 HOH HOH . E 5 HOH A 20 520 57 HOH HOH . E 5 HOH A 21 521 77 HOH HOH . E 5 HOH A 22 522 54 HOH HOH . E 5 HOH A 23 523 9 HOH HOH . E 5 HOH A 24 524 99 HOH HOH . E 5 HOH A 25 525 111 HOH HOH . E 5 HOH A 26 526 69 HOH HOH . E 5 HOH A 27 527 60 HOH HOH . E 5 HOH A 28 528 21 HOH HOH . E 5 HOH A 29 529 42 HOH HOH . E 5 HOH A 30 530 14 HOH HOH . E 5 HOH A 31 531 4 HOH HOH . E 5 HOH A 32 532 145 HOH HOH . E 5 HOH A 33 533 84 HOH HOH . E 5 HOH A 34 534 61 HOH HOH . E 5 HOH A 35 535 23 HOH HOH . E 5 HOH A 36 536 79 HOH HOH . E 5 HOH A 37 537 52 HOH HOH . E 5 HOH A 38 538 16 HOH HOH . E 5 HOH A 39 539 22 HOH HOH . E 5 HOH A 40 540 2 HOH HOH . E 5 HOH A 41 541 112 HOH HOH . E 5 HOH A 42 542 102 HOH HOH . E 5 HOH A 43 543 157 HOH HOH . E 5 HOH A 44 544 202 HOH HOH . E 5 HOH A 45 545 156 HOH HOH . E 5 HOH A 46 546 55 HOH HOH . E 5 HOH A 47 547 76 HOH HOH . E 5 HOH A 48 548 140 HOH HOH . E 5 HOH A 49 549 45 HOH HOH . E 5 HOH A 50 550 7 HOH HOH . E 5 HOH A 51 551 28 HOH HOH . E 5 HOH A 52 552 67 HOH HOH . E 5 HOH A 53 553 1 HOH HOH . E 5 HOH A 54 554 83 HOH HOH . E 5 HOH A 55 555 29 HOH HOH . E 5 HOH A 56 556 103 HOH HOH . E 5 HOH A 57 557 39 HOH HOH . E 5 HOH A 58 558 115 HOH HOH . E 5 HOH A 59 559 71 HOH HOH . E 5 HOH A 60 560 66 HOH HOH . E 5 HOH A 61 561 5 HOH HOH . E 5 HOH A 62 562 8 HOH HOH . E 5 HOH A 63 563 3 HOH HOH . E 5 HOH A 64 564 13 HOH HOH . E 5 HOH A 65 565 141 HOH HOH . E 5 HOH A 66 566 75 HOH HOH . E 5 HOH A 67 567 161 HOH HOH . E 5 HOH A 68 568 40 HOH HOH . E 5 HOH A 69 569 41 HOH HOH . E 5 HOH A 70 570 58 HOH HOH . E 5 HOH A 71 571 142 HOH HOH . E 5 HOH A 72 572 129 HOH HOH . E 5 HOH A 73 573 11 HOH HOH . E 5 HOH A 74 574 138 HOH HOH . E 5 HOH A 75 575 53 HOH HOH . E 5 HOH A 76 576 15 HOH HOH . E 5 HOH A 77 577 12 HOH HOH . E 5 HOH A 78 578 70 HOH HOH . E 5 HOH A 79 579 123 HOH HOH . E 5 HOH A 80 580 20 HOH HOH . E 5 HOH A 81 581 94 HOH HOH . E 5 HOH A 82 582 44 HOH HOH . E 5 HOH A 83 583 180 HOH HOH . E 5 HOH A 84 584 35 HOH HOH . E 5 HOH A 85 585 26 HOH HOH . E 5 HOH A 86 586 110 HOH HOH . E 5 HOH A 87 587 34 HOH HOH . E 5 HOH A 88 588 68 HOH HOH . E 5 HOH A 89 589 18 HOH HOH . E 5 HOH A 90 590 101 HOH HOH . E 5 HOH A 91 591 125 HOH HOH . E 5 HOH A 92 592 24 HOH HOH . E 5 HOH A 93 593 17 HOH HOH . E 5 HOH A 94 594 175 HOH HOH . E 5 HOH A 95 595 51 HOH HOH . E 5 HOH A 96 596 32 HOH HOH . E 5 HOH A 97 597 91 HOH HOH . E 5 HOH A 98 598 143 HOH HOH . E 5 HOH A 99 599 93 HOH HOH . E 5 HOH A 100 600 149 HOH HOH . E 5 HOH A 101 601 90 HOH HOH . E 5 HOH A 102 602 31 HOH HOH . E 5 HOH A 103 603 104 HOH HOH . E 5 HOH A 104 604 49 HOH HOH . E 5 HOH A 105 605 144 HOH HOH . E 5 HOH A 106 606 116 HOH HOH . E 5 HOH A 107 607 50 HOH HOH . E 5 HOH A 108 608 120 HOH HOH . E 5 HOH A 109 609 74 HOH HOH . E 5 HOH A 110 610 186 HOH HOH . E 5 HOH A 111 611 33 HOH HOH . E 5 HOH A 112 612 133 HOH HOH . E 5 HOH A 113 613 36 HOH HOH . E 5 HOH A 114 614 117 HOH HOH . E 5 HOH A 115 615 147 HOH HOH . E 5 HOH A 116 616 152 HOH HOH . E 5 HOH A 117 617 122 HOH HOH . E 5 HOH A 118 618 10 HOH HOH . E 5 HOH A 119 619 97 HOH HOH . E 5 HOH A 120 620 166 HOH HOH . E 5 HOH A 121 621 81 HOH HOH . E 5 HOH A 122 622 56 HOH HOH . E 5 HOH A 123 623 165 HOH HOH . E 5 HOH A 124 624 89 HOH HOH . E 5 HOH A 125 625 197 HOH HOH . E 5 HOH A 126 626 173 HOH HOH . E 5 HOH A 127 627 108 HOH HOH . E 5 HOH A 128 628 37 HOH HOH . E 5 HOH A 129 629 38 HOH HOH . E 5 HOH A 130 630 43 HOH HOH . E 5 HOH A 131 631 128 HOH HOH . E 5 HOH A 132 632 155 HOH HOH . E 5 HOH A 133 633 124 HOH HOH . E 5 HOH A 134 634 88 HOH HOH . E 5 HOH A 135 635 177 HOH HOH . E 5 HOH A 136 636 164 HOH HOH . E 5 HOH A 137 637 148 HOH HOH . E 5 HOH A 138 638 96 HOH HOH . E 5 HOH A 139 639 184 HOH HOH . E 5 HOH A 140 640 163 HOH HOH . E 5 HOH A 141 641 48 HOH HOH . E 5 HOH A 142 642 25 HOH HOH . E 5 HOH A 143 643 98 HOH HOH . E 5 HOH A 144 644 159 HOH HOH . E 5 HOH A 145 645 63 HOH HOH . E 5 HOH A 146 646 62 HOH HOH . E 5 HOH A 147 647 126 HOH HOH . E 5 HOH A 148 648 187 HOH HOH . E 5 HOH A 149 649 179 HOH HOH . E 5 HOH A 150 650 46 HOH HOH . E 5 HOH A 151 651 200 HOH HOH . E 5 HOH A 152 652 178 HOH HOH . E 5 HOH A 153 653 82 HOH HOH . E 5 HOH A 154 654 182 HOH HOH . E 5 HOH A 155 655 130 HOH HOH . E 5 HOH A 156 656 109 HOH HOH . E 5 HOH A 157 657 92 HOH HOH . E 5 HOH A 158 658 153 HOH HOH . E 5 HOH A 159 659 100 HOH HOH . E 5 HOH A 160 660 150 HOH HOH . E 5 HOH A 161 661 132 HOH HOH . E 5 HOH A 162 662 183 HOH HOH . E 5 HOH A 163 663 30 HOH HOH . E 5 HOH A 164 664 189 HOH HOH . E 5 HOH A 165 665 47 HOH HOH . E 5 HOH A 166 666 151 HOH HOH . E 5 HOH A 167 667 191 HOH HOH . E 5 HOH A 168 668 114 HOH HOH . E 5 HOH A 169 669 113 HOH HOH . E 5 HOH A 170 670 146 HOH HOH . E 5 HOH A 171 671 162 HOH HOH . E 5 HOH A 172 672 139 HOH HOH . E 5 HOH A 173 673 135 HOH HOH . E 5 HOH A 174 674 192 HOH HOH . E 5 HOH A 175 675 106 HOH HOH . E 5 HOH A 176 676 174 HOH HOH . E 5 HOH A 177 677 105 HOH HOH . E 5 HOH A 178 678 190 HOH HOH . E 5 HOH A 179 679 195 HOH HOH . E 5 HOH A 180 680 119 HOH HOH . E 5 HOH A 181 681 188 HOH HOH . E 5 HOH A 182 682 196 HOH HOH . E 5 HOH A 183 683 85 HOH HOH . E 5 HOH A 184 684 172 HOH HOH . E 5 HOH A 185 685 121 HOH HOH . E 5 HOH A 186 686 170 HOH HOH . E 5 HOH A 187 687 107 HOH HOH . E 5 HOH A 188 688 137 HOH HOH . E 5 HOH A 189 689 127 HOH HOH . E 5 HOH A 190 690 78 HOH HOH . E 5 HOH A 191 691 136 HOH HOH . E 5 HOH A 192 692 87 HOH HOH . E 5 HOH A 193 693 185 HOH HOH . E 5 HOH A 194 694 193 HOH HOH . E 5 HOH A 195 695 198 HOH HOH . E 5 HOH A 196 696 194 HOH HOH . E 5 HOH A 197 697 86 HOH HOH . E 5 HOH A 198 698 176 HOH HOH . E 5 HOH A 199 699 168 HOH HOH . E 5 HOH A 200 700 131 HOH HOH . E 5 HOH A 201 701 167 HOH HOH . E 5 HOH A 202 702 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JE0 . . . D 4 19.775 50.247 13.712 1 18.96 ? C10 JE0 403 A 1 HETATM 2 C C11 JE0 . . . D 4 18.515 49.846 13.296 1 18.7 ? C11 JE0 403 A 1 HETATM 3 C C12 JE0 . . . D 4 17.501 49.674 14.238 1 21.63 ? C12 JE0 403 A 1 HETATM 4 C C13 JE0 . . . D 4 17.701 49.909 15.599 1 19.05 ? C13 JE0 403 A 1 HETATM 5 N N JE0 . . . D 4 14.071 50.705 21.072 1 20.19 ? N JE0 403 A 1 HETATM 6 C C JE0 . . . D 4 15.122 48.205 17.524 1 20.44 ? C JE0 403 A 1 HETATM 7 O O JE0 . . . D 4 15.042 50.785 18.999 1 21.11 ? O JE0 403 A 1 HETATM 8 C C1 JE0 . . . D 4 15.407 49.57 16.896 1 17.82 ? C1 JE0 403 A 1 HETATM 9 C C2 JE0 . . . D 4 14.622 50.695 17.615 1 18.81 ? C2 JE0 403 A 1 HETATM 10 C C3 JE0 . . . D 4 13.94 50.654 19.761 1 19.38 ? C3 JE0 403 A 1 HETATM 11 C C4 JE0 . . . D 4 12.934 50.537 21.96 1 21.66 ? C4 JE0 403 A 1 HETATM 12 C C5 JE0 . . . D 4 13.122 50.46 17.753 1 23.43 ? C5 JE0 403 A 1 HETATM 13 C C6 JE0 . . . D 4 16.893 49.872 16.799 1 21.1 ? C6 JE0 403 A 1 HETATM 14 C C7 JE0 . . . D 4 17.731 50.194 17.815 1 16.73 ? C7 JE0 403 A 1 HETATM 15 C C8 JE0 . . . D 4 18.999 50.289 15.983 1 16.48 ? C8 JE0 403 A 1 HETATM 16 C C9 JE0 . . . D 4 20.03 50.465 15.057 1 16.88 ? C9 JE0 403 A 1 HETATM 17 N N1 JE0 . . . D 4 12.821 50.467 19.085 1 24.46 ? N1 JE0 403 A 1 HETATM 18 N N2 JE0 . . . D 4 18.999 50.443 17.353 1 15.41 ? N2 JE0 403 A 1 HETATM 19 O O1 JE0 . . . D 4 12.311 50.282 16.856 1 25.52 ? O1 JE0 403 A 1 HETATM 20 CL CL JE0 . . . D 4 15.957 49.117 13.684 1 52.98 ? CL JE0 403 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #