data_7EV3 # _model_server_result.job_id s_V8sEGMqyYKONVeEljSNA _model_server_result.datetime_utc '2024-11-02 11:34:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ev3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7EV3 # _exptl.entry_id 7EV3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 275.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S)-5-[(1R)-1-(4-fluoranyl-1H-indol-3-yl)ethyl]-2-(methylamino)-1,3-oxazol-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7EV3 _cell.length_a 61.266 _cell.length_b 61.266 _cell.length_c 333.627 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EV3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_775 -y+2,-x+2,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 61.266 106.115825 55.6045 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O2G ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc2 B O2B ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc3 B O2A ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc4 C MG MG . A MG 402 1_555 E O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc5 C MG MG . A MG 402 1_555 E O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? # _chem_comp.formula 'C14 H14 F N3 O2' _chem_comp.formula_weight 275.278 _chem_comp.id JE3 _chem_comp.mon_nstd_flag . _chem_comp.name (5S)-5-[(1R)-1-(4-fluoranyl-1H-indol-3-yl)ethyl]-2-(methylamino)-1,3-oxazol-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 JE3 doub 222 n y C11 C12 JE3 sing 223 n y C10 C9 JE3 sing 224 n y F C12 JE3 sing 225 n n C12 C13 JE3 doub 226 n y C9 C8 JE3 doub 227 n y C13 C8 JE3 sing 228 n y C13 C6 JE3 sing 229 n y C8 N2 JE3 sing 230 n y C6 C1 JE3 sing 231 n n C6 C7 JE3 doub 232 n y C1 C JE3 sing 233 n n C1 C2 JE3 sing 234 n n O1 C5 JE3 doub 235 n n N2 C7 JE3 sing 236 n y C2 C5 JE3 sing 237 n n C2 O JE3 sing 238 n n C5 N1 JE3 sing 239 n n O C3 JE3 sing 240 n n N1 C3 JE3 doub 241 n n C3 N JE3 sing 242 n n N C4 JE3 sing 243 n n N H1 JE3 sing 244 n n C10 H2 JE3 sing 245 n n C11 H3 JE3 sing 246 n n C H4 JE3 sing 247 n n C H5 JE3 sing 248 n n C H6 JE3 sing 249 n n C1 H7 JE3 sing 250 n n C2 H8 JE3 sing 251 n n C4 H9 JE3 sing 252 n n C4 H10 JE3 sing 253 n n C4 H11 JE3 sing 254 n n C7 H12 JE3 sing 255 n n C9 H13 JE3 sing 256 n n N2 H14 JE3 sing 257 n n # _atom_sites.entry_id 7EV3 _atom_sites.fract_transf_matrix[1][1] 0.016322 _atom_sites.fract_transf_matrix[1][2] 0.009424 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018847 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 401 4 ATP ATP . C 3 MG A 1 402 1 MG MG . D 4 JE3 A 1 403 1 JE3 Y10 . E 5 HOH A 1 501 22 HOH HOH . E 5 HOH A 2 502 38 HOH HOH . E 5 HOH A 3 503 12 HOH HOH . E 5 HOH A 4 504 8 HOH HOH . E 5 HOH A 5 505 9 HOH HOH . E 5 HOH A 6 506 35 HOH HOH . E 5 HOH A 7 507 42 HOH HOH . E 5 HOH A 8 508 7 HOH HOH . E 5 HOH A 9 509 15 HOH HOH . E 5 HOH A 10 510 37 HOH HOH . E 5 HOH A 11 511 13 HOH HOH . E 5 HOH A 12 512 3 HOH HOH . E 5 HOH A 13 513 40 HOH HOH . E 5 HOH A 14 514 36 HOH HOH . E 5 HOH A 15 515 14 HOH HOH . E 5 HOH A 16 516 2 HOH HOH . E 5 HOH A 17 517 21 HOH HOH . E 5 HOH A 18 518 18 HOH HOH . E 5 HOH A 19 519 4 HOH HOH . E 5 HOH A 20 520 28 HOH HOH . E 5 HOH A 21 521 27 HOH HOH . E 5 HOH A 22 522 6 HOH HOH . E 5 HOH A 23 523 26 HOH HOH . E 5 HOH A 24 524 5 HOH HOH . E 5 HOH A 25 525 20 HOH HOH . E 5 HOH A 26 526 1 HOH HOH . E 5 HOH A 27 527 43 HOH HOH . E 5 HOH A 28 528 11 HOH HOH . E 5 HOH A 29 529 24 HOH HOH . E 5 HOH A 30 530 32 HOH HOH . E 5 HOH A 31 531 41 HOH HOH . E 5 HOH A 32 532 16 HOH HOH . E 5 HOH A 33 533 10 HOH HOH . E 5 HOH A 34 534 39 HOH HOH . E 5 HOH A 35 535 23 HOH HOH . E 5 HOH A 36 536 17 HOH HOH . E 5 HOH A 37 537 44 HOH HOH . E 5 HOH A 38 538 34 HOH HOH . E 5 HOH A 39 539 19 HOH HOH . E 5 HOH A 40 540 30 HOH HOH . E 5 HOH A 41 541 25 HOH HOH . E 5 HOH A 42 542 33 HOH HOH . E 5 HOH A 43 543 29 HOH HOH . E 5 HOH A 44 544 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N JE3 . . . D 4 14.047 50.382 20.956 1 32.31 ? N JE3 403 A 1 HETATM 2 O O1 JE3 . . . D 4 12.25 49.89 16.739 1 39.09 ? O1 JE3 403 A 1 HETATM 3 C C10 JE3 . . . D 4 19.624 49.946 13.5 1 28.18 ? C10 JE3 403 A 1 HETATM 4 C C11 JE3 . . . D 4 18.341 49.612 13.102 1 28.08 ? C11 JE3 403 A 1 HETATM 5 C C12 JE3 . . . D 4 17.36 49.457 14.056 1 34.24 ? C12 JE3 403 A 1 HETATM 6 C C13 JE3 . . . D 4 17.593 49.638 15.42 1 32.07 ? C13 JE3 403 A 1 HETATM 7 C C JE3 . . . D 4 15.041 47.883 17.309 1 24.89 ? C JE3 403 A 1 HETATM 8 O O JE3 . . . D 4 15.005 50.39 18.874 1 35.61 ? O JE3 403 A 1 HETATM 9 C C1 JE3 . . . D 4 15.325 49.256 16.725 1 31.27 ? C1 JE3 403 A 1 HETATM 10 C C2 JE3 . . . D 4 14.565 50.357 17.494 1 33.22 ? C2 JE3 403 A 1 HETATM 11 C C3 JE3 . . . D 4 13.898 50.321 19.64 1 38.46 ? C3 JE3 403 A 1 HETATM 12 C C4 JE3 . . . D 4 12.848 50.297 21.769 1 33 ? C4 JE3 403 A 1 HETATM 13 C C5 JE3 . . . D 4 13.063 50.121 17.628 1 37.8 ? C5 JE3 403 A 1 HETATM 14 C C6 JE3 . . . D 4 16.806 49.586 16.628 1 31 ? C6 JE3 403 A 1 HETATM 15 C C7 JE3 . . . D 4 17.663 49.877 17.638 1 32.01 ? C7 JE3 403 A 1 HETATM 16 C C8 JE3 . . . D 4 18.905 49.97 15.788 1 28.81 ? C8 JE3 403 A 1 HETATM 17 C C9 JE3 . . . D 4 19.925 50.122 14.847 1 28.35 ? C9 JE3 403 A 1 HETATM 18 F F JE3 . . . D 4 16.118 49.099 13.668 1 35.57 ? F JE3 403 A 1 HETATM 19 N N1 JE3 . . . D 4 12.764 50.154 18.958 1 37.87 ? N1 JE3 403 A 1 HETATM 20 N N2 JE3 . . . D 4 18.925 50.111 17.158 1 30.37 ? N2 JE3 403 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 546 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #