data_7EVL # _model_server_result.job_id 8kK4Jg-lLs7UNRVTZmuGNg _model_server_result.datetime_utc '2025-01-31 02:49:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7evl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7EVL # _exptl.entry_id 7EVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EVL _cell.length_a 40.166 _cell.length_b 79.515 _cell.length_c 90.892 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 247 B ASN 247 1_555 E NA NA . B NA 504 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc2 A OE1 GLU 252 B GLU 252 1_555 E NA NA . B NA 504 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc3 A OE2 GLU 252 B GLU 252 1_555 E NA NA . B NA 504 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc4 B O2G GTP . B GTP 501 1_555 D NA NA . B NA 503 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc5 B O3G GTP . B GTP 501 1_555 D NA NA . B NA 503 1_555 ? A ? ? ? ? ? ? ? ? ? ? 3.109 ? metalc ? metalc6 B O2B GTP . B GTP 501 1_555 D NA NA . B NA 503 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc7 B O2G GTP . B GTP 501 1_555 E NA NA . B NA 504 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc8 C O2B GDP . B GDP 502 1_555 D NA NA . B NA 503 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc9 D NA NA . B NA 503 1_555 F O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc10 D NA NA . B NA 503 1_555 F O HOH . B HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc11 D NA NA . B NA 503 1_555 F O HOH . B HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc12 D NA NA . B NA 503 1_555 F O HOH . B HOH 622 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc13 E NA NA . B NA 504 1_555 F O HOH . B HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc14 E NA NA . B NA 504 1_555 F O HOH . B HOH 622 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? metalc ? metalc15 E NA NA . B NA 504 1_555 F O HOH . B HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 174 n n PG O2G GTP sing 175 n n PG O3G GTP sing 176 n n PG O3B GTP sing 177 n n O2G HOG2 GTP sing 178 n n O3G HOG3 GTP sing 179 n n O3B PB GTP sing 180 n n PB O1B GTP doub 181 n n PB O2B GTP sing 182 n n PB O3A GTP sing 183 n n O2B HOB2 GTP sing 184 n n O3A PA GTP sing 185 n n PA O1A GTP doub 186 n n PA O2A GTP sing 187 n n PA O5' GTP sing 188 n n O2A HOA2 GTP sing 189 n n O5' C5' GTP sing 190 n n C5' C4' GTP sing 191 n n C5' H5' GTP sing 192 n n C5' "H5''" GTP sing 193 n n C4' O4' GTP sing 194 n n C4' C3' GTP sing 195 n n C4' H4' GTP sing 196 n n O4' C1' GTP sing 197 n n C3' O3' GTP sing 198 n n C3' C2' GTP sing 199 n n C3' H3' GTP sing 200 n n O3' HO3' GTP sing 201 n n C2' O2' GTP sing 202 n n C2' C1' GTP sing 203 n n C2' H2' GTP sing 204 n n O2' HO2' GTP sing 205 n n C1' N9 GTP sing 206 n n C1' H1' GTP sing 207 n n N9 C8 GTP sing 208 n y N9 C4 GTP sing 209 n y C8 N7 GTP doub 210 n y C8 H8 GTP sing 211 n n N7 C5 GTP sing 212 n y C5 C6 GTP sing 213 n n C5 C4 GTP doub 214 n y C6 O6 GTP doub 215 n n C6 N1 GTP sing 216 n n N1 C2 GTP sing 217 n n N1 HN1 GTP sing 218 n n C2 N2 GTP sing 219 n n C2 N3 GTP doub 220 n n N2 HN21 GTP sing 221 n n N2 HN22 GTP sing 222 n n N3 C4 GTP sing 223 n n # _atom_sites.entry_id 7EVL _atom_sites.fract_transf_matrix[1][1] 0.024897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTP B 1 501 501 GTP GTP . C 3 GDP B 1 502 501 GDP GDP . D 4 NA B 1 503 1 NA NA . E 4 NA B 1 504 2 NA NA . F 5 HOH B 1 601 22 HOH HOH . F 5 HOH B 2 602 26 HOH HOH . F 5 HOH B 3 603 13 HOH HOH . F 5 HOH B 4 604 30 HOH HOH . F 5 HOH B 5 605 27 HOH HOH . F 5 HOH B 6 606 5 HOH HOH . F 5 HOH B 7 607 25 HOH HOH . F 5 HOH B 8 608 1 HOH HOH . F 5 HOH B 9 609 21 HOH HOH . F 5 HOH B 10 610 19 HOH HOH . F 5 HOH B 11 611 18 HOH HOH . F 5 HOH B 12 612 6 HOH HOH . F 5 HOH B 13 613 3 HOH HOH . F 5 HOH B 14 614 10 HOH HOH . F 5 HOH B 15 615 9 HOH HOH . F 5 HOH B 16 616 4 HOH HOH . F 5 HOH B 17 617 15 HOH HOH . F 5 HOH B 18 618 11 HOH HOH . F 5 HOH B 19 619 28 HOH HOH . F 5 HOH B 20 620 7 HOH HOH . F 5 HOH B 21 621 20 HOH HOH . F 5 HOH B 22 622 24 HOH HOH . F 5 HOH B 23 623 12 HOH HOH . F 5 HOH B 24 624 2 HOH HOH . F 5 HOH B 25 625 17 HOH HOH . F 5 HOH B 26 626 29 HOH HOH . F 5 HOH B 27 627 23 HOH HOH . F 5 HOH B 28 628 14 HOH HOH . F 5 HOH B 29 629 16 HOH HOH . F 5 HOH B 30 630 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . A . B 2 -1.024 0.803 -15.248 0.61 39.01 ? PG GTP 501 B 1 HETATM 2 O O1G GTP . A . B 2 -1.665 -0.535 -15.519 0.61 26.21 ? O1G GTP 501 B 1 HETATM 3 O O2G GTP . A . B 2 -1.572 1.362 -13.955 0.61 31.23 ? O2G GTP 501 B 1 HETATM 4 O O3G GTP . A . B 2 -1.334 1.745 -16.389 0.61 36.8 ? O3G GTP 501 B 1 HETATM 5 O O3B GTP . A . B 2 0.571 0.578 -15.129 0.61 39.18 ? O3B GTP 501 B 1 HETATM 6 P PB GTP . A . B 2 1.445 1.376 -14.035 0.61 36.15 ? PB GTP 501 B 1 HETATM 7 O O1B GTP . A . B 2 2.903 1.035 -14.232 0.61 39.86 ? O1B GTP 501 B 1 HETATM 8 O O2B GTP . A . B 2 1.225 2.87 -14.108 0.61 40.02 ? O2B GTP 501 B 1 HETATM 9 O O3A GTP . A . B 2 0.907 0.791 -12.633 0.61 40.24 ? O3A GTP 501 B 1 HETATM 10 P PA GTP . A . B 2 1.773 0.875 -11.277 0.61 34.37 ? PA GTP 501 B 1 HETATM 11 O O1A GTP . A . B 2 3.039 1.664 -11.505 0.61 40.01 ? O1A GTP 501 B 1 HETATM 12 O O2A GTP . A . B 2 0.948 1.487 -10.171 0.61 40.53 ? O2A GTP 501 B 1 HETATM 13 O O5' GTP . A . B 2 2.135 -0.658 -10.936 0.61 39.34 ? O5' GTP 501 B 1 HETATM 14 C C5' GTP . A . B 2 1.394 -1.386 -9.983 0.61 36.89 ? C5' GTP 501 B 1 HETATM 15 C C4' GTP . A . B 2 2.314 -1.814 -8.846 0.61 36.59 ? C4' GTP 501 B 1 HETATM 16 O O4' GTP . A . B 2 3.31 -0.832 -8.643 0.61 34.59 ? O4' GTP 501 B 1 HETATM 17 C C3' GTP . A . B 2 1.551 -1.965 -7.545 0.61 38.45 ? C3' GTP 501 B 1 HETATM 18 O O3' GTP . A . B 2 1.762 -3.27 -7.054 0.61 40.04 ? O3' GTP 501 B 1 HETATM 19 C C2' GTP . A . B 2 2.164 -0.957 -6.594 0.61 38.04 ? C2' GTP 501 B 1 HETATM 20 O O2' GTP . A . B 2 2.41 -1.541 -5.334 0.61 40.17 ? O2' GTP 501 B 1 HETATM 21 C C1' GTP . A . B 2 3.457 -0.528 -7.27 0.61 35.79 ? C1' GTP 501 B 1 HETATM 22 N N9 GTP . A . B 2 3.671 0.923 -7.145 0.61 33.11 ? N9 GTP 501 B 1 HETATM 23 C C8 GTP . A . B 2 2.904 1.913 -7.704 0.61 32.47 ? C8 GTP 501 B 1 HETATM 24 N N7 GTP . A . B 2 3.439 3.109 -7.368 0.61 30.3 ? N7 GTP 501 B 1 HETATM 25 C C5 GTP . A . B 2 4.541 2.896 -6.617 0.61 31.74 ? C5 GTP 501 B 1 HETATM 26 C C6 GTP . A . B 2 5.451 3.761 -6.027 0.61 33.43 ? C6 GTP 501 B 1 HETATM 27 O O6 GTP . A . B 2 5.313 4.977 -6.155 0.61 32.61 ? O6 GTP 501 B 1 HETATM 28 N N1 GTP . A . B 2 6.504 3.247 -5.298 0.61 35.33 ? N1 GTP 501 B 1 HETATM 29 C C2 GTP . A . B 2 6.647 1.878 -5.163 0.61 35.32 ? C2 GTP 501 B 1 HETATM 30 N N2 GTP . A . B 2 7.661 1.378 -4.464 0.61 33.41 ? N2 GTP 501 B 1 HETATM 31 N N3 GTP . A . B 2 5.739 1.023 -5.756 0.61 35.48 ? N3 GTP 501 B 1 HETATM 32 C C4 GTP . A . B 2 4.703 1.524 -6.471 0.61 33.91 ? C4 GTP 501 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 32 #