data_7EVV # _model_server_result.job_id mftDZBscWFGayJWhdrEsFg _model_server_result.datetime_utc '2024-11-05 08:05:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7evv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":904}' # _entry.id 7EVV # _exptl.entry_id 7EVV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.74 _cell.angle_gamma 90 _cell.entry_id 7EVV _cell.length_a 111.35 _cell.length_b 75.2 _cell.length_c 74.74 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EVV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 290 n n C1 H11 MPD sing 291 n n C1 H12 MPD sing 292 n n C1 H13 MPD sing 293 n n C2 O2 MPD sing 294 n n C2 CM MPD sing 295 n n C2 C3 MPD sing 296 n n O2 HO2 MPD sing 297 n n CM HM1 MPD sing 298 n n CM HM2 MPD sing 299 n n CM HM3 MPD sing 300 n n C3 C4 MPD sing 301 n n C3 H31 MPD sing 302 n n C3 H32 MPD sing 303 n n C4 O4 MPD sing 304 n n C4 C5 MPD sing 305 n n C4 H4 MPD sing 306 n n O4 HO4 MPD sing 307 n n C5 H51 MPD sing 308 n n C5 H52 MPD sing 309 n n C5 H53 MPD sing 310 n n # _atom_sites.entry_id 7EVV _atom_sites.fract_transf_matrix[1][1] 0.008981 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003401 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JE6 A 1 901 901 JE6 L95 . C 3 PRO A 1 902 1001 PRO PRO . D 4 CL A 1 903 1101 CL CL . E 5 MPD A 1 904 1201 MPD MPD . F 5 MPD A 1 905 1202 MPD MPD . G 6 HOH A 1 1001 287 HOH HOH . G 6 HOH A 2 1002 209 HOH HOH . G 6 HOH A 3 1003 37 HOH HOH . G 6 HOH A 4 1004 241 HOH HOH . G 6 HOH A 5 1005 286 HOH HOH . G 6 HOH A 6 1006 225 HOH HOH . G 6 HOH A 7 1007 91 HOH HOH . G 6 HOH A 8 1008 110 HOH HOH . G 6 HOH A 9 1009 161 HOH HOH . G 6 HOH A 10 1010 273 HOH HOH . G 6 HOH A 11 1011 279 HOH HOH . G 6 HOH A 12 1012 124 HOH HOH . G 6 HOH A 13 1013 14 HOH HOH . G 6 HOH A 14 1014 122 HOH HOH . G 6 HOH A 15 1015 136 HOH HOH . G 6 HOH A 16 1016 203 HOH HOH . G 6 HOH A 17 1017 212 HOH HOH . G 6 HOH A 18 1018 238 HOH HOH . G 6 HOH A 19 1019 24 HOH HOH . G 6 HOH A 20 1020 49 HOH HOH . G 6 HOH A 21 1021 108 HOH HOH . G 6 HOH A 22 1022 51 HOH HOH . G 6 HOH A 23 1023 76 HOH HOH . G 6 HOH A 24 1024 204 HOH HOH . G 6 HOH A 25 1025 85 HOH HOH . G 6 HOH A 26 1026 32 HOH HOH . G 6 HOH A 27 1027 5 HOH HOH . G 6 HOH A 28 1028 216 HOH HOH . G 6 HOH A 29 1029 72 HOH HOH . G 6 HOH A 30 1030 53 HOH HOH . G 6 HOH A 31 1031 142 HOH HOH . G 6 HOH A 32 1032 46 HOH HOH . G 6 HOH A 33 1033 47 HOH HOH . G 6 HOH A 34 1034 245 HOH HOH . G 6 HOH A 35 1035 269 HOH HOH . G 6 HOH A 36 1036 8 HOH HOH . G 6 HOH A 37 1037 97 HOH HOH . G 6 HOH A 38 1038 252 HOH HOH . G 6 HOH A 39 1039 10 HOH HOH . G 6 HOH A 40 1040 160 HOH HOH . G 6 HOH A 41 1041 33 HOH HOH . G 6 HOH A 42 1042 71 HOH HOH . G 6 HOH A 43 1043 183 HOH HOH . G 6 HOH A 44 1044 206 HOH HOH . G 6 HOH A 45 1045 82 HOH HOH . G 6 HOH A 46 1046 127 HOH HOH . G 6 HOH A 47 1047 109 HOH HOH . G 6 HOH A 48 1048 235 HOH HOH . G 6 HOH A 49 1049 43 HOH HOH . G 6 HOH A 50 1050 106 HOH HOH . G 6 HOH A 51 1051 26 HOH HOH . G 6 HOH A 52 1052 134 HOH HOH . G 6 HOH A 53 1053 105 HOH HOH . G 6 HOH A 54 1054 17 HOH HOH . G 6 HOH A 55 1055 102 HOH HOH . G 6 HOH A 56 1056 285 HOH HOH . G 6 HOH A 57 1057 121 HOH HOH . G 6 HOH A 58 1058 188 HOH HOH . G 6 HOH A 59 1059 81 HOH HOH . G 6 HOH A 60 1060 220 HOH HOH . G 6 HOH A 61 1061 158 HOH HOH . G 6 HOH A 62 1062 54 HOH HOH . G 6 HOH A 63 1063 111 HOH HOH . G 6 HOH A 64 1064 150 HOH HOH . G 6 HOH A 65 1065 137 HOH HOH . G 6 HOH A 66 1066 164 HOH HOH . G 6 HOH A 67 1067 56 HOH HOH . G 6 HOH A 68 1068 157 HOH HOH . G 6 HOH A 69 1069 70 HOH HOH . G 6 HOH A 70 1070 211 HOH HOH . G 6 HOH A 71 1071 3 HOH HOH . G 6 HOH A 72 1072 118 HOH HOH . G 6 HOH A 73 1073 41 HOH HOH . G 6 HOH A 74 1074 114 HOH HOH . G 6 HOH A 75 1075 31 HOH HOH . G 6 HOH A 76 1076 231 HOH HOH . G 6 HOH A 77 1077 277 HOH HOH . G 6 HOH A 78 1078 95 HOH HOH . G 6 HOH A 79 1079 162 HOH HOH . G 6 HOH A 80 1080 257 HOH HOH . G 6 HOH A 81 1081 39 HOH HOH . G 6 HOH A 82 1082 165 HOH HOH . G 6 HOH A 83 1083 281 HOH HOH . G 6 HOH A 84 1084 93 HOH HOH . G 6 HOH A 85 1085 19 HOH HOH . G 6 HOH A 86 1086 40 HOH HOH . G 6 HOH A 87 1087 75 HOH HOH . G 6 HOH A 88 1088 259 HOH HOH . G 6 HOH A 89 1089 4 HOH HOH . G 6 HOH A 90 1090 125 HOH HOH . G 6 HOH A 91 1091 237 HOH HOH . G 6 HOH A 92 1092 267 HOH HOH . G 6 HOH A 93 1093 190 HOH HOH . G 6 HOH A 94 1094 87 HOH HOH . G 6 HOH A 95 1095 178 HOH HOH . G 6 HOH A 96 1096 35 HOH HOH . G 6 HOH A 97 1097 1 HOH HOH . G 6 HOH A 98 1098 22 HOH HOH . G 6 HOH A 99 1099 187 HOH HOH . G 6 HOH A 100 1100 230 HOH HOH . G 6 HOH A 101 1101 96 HOH HOH . G 6 HOH A 102 1102 23 HOH HOH . G 6 HOH A 103 1103 6 HOH HOH . G 6 HOH A 104 1104 62 HOH HOH . G 6 HOH A 105 1105 29 HOH HOH . G 6 HOH A 106 1106 38 HOH HOH . G 6 HOH A 107 1107 283 HOH HOH . G 6 HOH A 108 1108 20 HOH HOH . G 6 HOH A 109 1109 140 HOH HOH . G 6 HOH A 110 1110 2 HOH HOH . G 6 HOH A 111 1111 139 HOH HOH . G 6 HOH A 112 1112 169 HOH HOH . G 6 HOH A 113 1113 261 HOH HOH . G 6 HOH A 114 1114 34 HOH HOH . G 6 HOH A 115 1115 253 HOH HOH . G 6 HOH A 116 1116 100 HOH HOH . G 6 HOH A 117 1117 42 HOH HOH . G 6 HOH A 118 1118 55 HOH HOH . G 6 HOH A 119 1119 21 HOH HOH . G 6 HOH A 120 1120 90 HOH HOH . G 6 HOH A 121 1121 229 HOH HOH . G 6 HOH A 122 1122 104 HOH HOH . G 6 HOH A 123 1123 15 HOH HOH . G 6 HOH A 124 1124 156 HOH HOH . G 6 HOH A 125 1125 59 HOH HOH . G 6 HOH A 126 1126 79 HOH HOH . G 6 HOH A 127 1127 92 HOH HOH . G 6 HOH A 128 1128 214 HOH HOH . G 6 HOH A 129 1129 48 HOH HOH . G 6 HOH A 130 1130 65 HOH HOH . G 6 HOH A 131 1131 275 HOH HOH . G 6 HOH A 132 1132 63 HOH HOH . G 6 HOH A 133 1133 246 HOH HOH . G 6 HOH A 134 1134 199 HOH HOH . G 6 HOH A 135 1135 144 HOH HOH . G 6 HOH A 136 1136 147 HOH HOH . G 6 HOH A 137 1137 88 HOH HOH . G 6 HOH A 138 1138 117 HOH HOH . G 6 HOH A 139 1139 145 HOH HOH . G 6 HOH A 140 1140 67 HOH HOH . G 6 HOH A 141 1141 254 HOH HOH . G 6 HOH A 142 1142 271 HOH HOH . G 6 HOH A 143 1143 98 HOH HOH . G 6 HOH A 144 1144 7 HOH HOH . G 6 HOH A 145 1145 36 HOH HOH . G 6 HOH A 146 1146 52 HOH HOH . G 6 HOH A 147 1147 123 HOH HOH . G 6 HOH A 148 1148 143 HOH HOH . G 6 HOH A 149 1149 13 HOH HOH . G 6 HOH A 150 1150 186 HOH HOH . G 6 HOH A 151 1151 113 HOH HOH . G 6 HOH A 152 1152 227 HOH HOH . G 6 HOH A 153 1153 282 HOH HOH . G 6 HOH A 154 1154 86 HOH HOH . G 6 HOH A 155 1155 58 HOH HOH . G 6 HOH A 156 1156 228 HOH HOH . G 6 HOH A 157 1157 66 HOH HOH . G 6 HOH A 158 1158 131 HOH HOH . G 6 HOH A 159 1159 89 HOH HOH . G 6 HOH A 160 1160 77 HOH HOH . G 6 HOH A 161 1161 73 HOH HOH . G 6 HOH A 162 1162 101 HOH HOH . G 6 HOH A 163 1163 200 HOH HOH . G 6 HOH A 164 1164 244 HOH HOH . G 6 HOH A 165 1165 152 HOH HOH . G 6 HOH A 166 1166 215 HOH HOH . G 6 HOH A 167 1167 116 HOH HOH . G 6 HOH A 168 1168 175 HOH HOH . G 6 HOH A 169 1169 78 HOH HOH . G 6 HOH A 170 1170 233 HOH HOH . G 6 HOH A 171 1171 174 HOH HOH . G 6 HOH A 172 1172 60 HOH HOH . G 6 HOH A 173 1173 166 HOH HOH . G 6 HOH A 174 1174 258 HOH HOH . G 6 HOH A 175 1175 107 HOH HOH . G 6 HOH A 176 1176 69 HOH HOH . G 6 HOH A 177 1177 27 HOH HOH . G 6 HOH A 178 1178 25 HOH HOH . G 6 HOH A 179 1179 50 HOH HOH . G 6 HOH A 180 1180 11 HOH HOH . G 6 HOH A 181 1181 218 HOH HOH . G 6 HOH A 182 1182 120 HOH HOH . G 6 HOH A 183 1183 272 HOH HOH . G 6 HOH A 184 1184 84 HOH HOH . G 6 HOH A 185 1185 151 HOH HOH . G 6 HOH A 186 1186 148 HOH HOH . G 6 HOH A 187 1187 119 HOH HOH . G 6 HOH A 188 1188 255 HOH HOH . G 6 HOH A 189 1189 74 HOH HOH . G 6 HOH A 190 1190 64 HOH HOH . G 6 HOH A 191 1191 12 HOH HOH . G 6 HOH A 192 1192 221 HOH HOH . G 6 HOH A 193 1193 83 HOH HOH . G 6 HOH A 194 1194 146 HOH HOH . G 6 HOH A 195 1195 153 HOH HOH . G 6 HOH A 196 1196 16 HOH HOH . G 6 HOH A 197 1197 198 HOH HOH . G 6 HOH A 198 1198 18 HOH HOH . G 6 HOH A 199 1199 133 HOH HOH . G 6 HOH A 200 1200 167 HOH HOH . G 6 HOH A 201 1201 239 HOH HOH . G 6 HOH A 202 1202 260 HOH HOH . G 6 HOH A 203 1203 45 HOH HOH . G 6 HOH A 204 1204 128 HOH HOH . G 6 HOH A 205 1205 256 HOH HOH . G 6 HOH A 206 1206 44 HOH HOH . G 6 HOH A 207 1207 112 HOH HOH . G 6 HOH A 208 1208 191 HOH HOH . G 6 HOH A 209 1209 202 HOH HOH . G 6 HOH A 210 1210 284 HOH HOH . G 6 HOH A 211 1211 68 HOH HOH . G 6 HOH A 212 1212 179 HOH HOH . G 6 HOH A 213 1213 30 HOH HOH . G 6 HOH A 214 1214 9 HOH HOH . G 6 HOH A 215 1215 28 HOH HOH . G 6 HOH A 216 1216 201 HOH HOH . G 6 HOH A 217 1217 163 HOH HOH . G 6 HOH A 218 1218 234 HOH HOH . G 6 HOH A 219 1219 264 HOH HOH . G 6 HOH A 220 1220 80 HOH HOH . G 6 HOH A 221 1221 248 HOH HOH . G 6 HOH A 222 1222 268 HOH HOH . G 6 HOH A 223 1223 181 HOH HOH . G 6 HOH A 224 1224 138 HOH HOH . G 6 HOH A 225 1225 280 HOH HOH . G 6 HOH A 226 1226 132 HOH HOH . G 6 HOH A 227 1227 197 HOH HOH . G 6 HOH A 228 1228 240 HOH HOH . G 6 HOH A 229 1229 262 HOH HOH . G 6 HOH A 230 1230 222 HOH HOH . G 6 HOH A 231 1231 205 HOH HOH . G 6 HOH A 232 1232 208 HOH HOH . G 6 HOH A 233 1233 173 HOH HOH . G 6 HOH A 234 1234 172 HOH HOH . G 6 HOH A 235 1235 159 HOH HOH . G 6 HOH A 236 1236 171 HOH HOH . G 6 HOH A 237 1237 129 HOH HOH . G 6 HOH A 238 1238 115 HOH HOH . G 6 HOH A 239 1239 185 HOH HOH . G 6 HOH A 240 1240 250 HOH HOH . G 6 HOH A 241 1241 249 HOH HOH . G 6 HOH A 242 1242 189 HOH HOH . G 6 HOH A 243 1243 194 HOH HOH . G 6 HOH A 244 1244 213 HOH HOH . G 6 HOH A 245 1245 223 HOH HOH . G 6 HOH A 246 1246 195 HOH HOH . G 6 HOH A 247 1247 210 HOH HOH . G 6 HOH A 248 1248 192 HOH HOH . G 6 HOH A 249 1249 94 HOH HOH . G 6 HOH A 250 1250 135 HOH HOH . G 6 HOH A 251 1251 176 HOH HOH . G 6 HOH A 252 1252 149 HOH HOH . G 6 HOH A 253 1253 224 HOH HOH . G 6 HOH A 254 1254 247 HOH HOH . G 6 HOH A 255 1255 182 HOH HOH . G 6 HOH A 256 1256 274 HOH HOH . G 6 HOH A 257 1257 278 HOH HOH . G 6 HOH A 258 1258 103 HOH HOH . G 6 HOH A 259 1259 130 HOH HOH . G 6 HOH A 260 1260 141 HOH HOH . G 6 HOH A 261 1261 57 HOH HOH . G 6 HOH A 262 1262 219 HOH HOH . G 6 HOH A 263 1263 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . E 5 6.468 -8.151 9.816 1 23 ? C1 MPD 904 A 1 HETATM 2 C C2 MPD . . . E 5 5.437 -7.092 10.139 1 32.78 ? C2 MPD 904 A 1 HETATM 3 O O2 MPD . . . E 5 5.791 -5.979 9.259 1 48.05 ? O2 MPD 904 A 1 HETATM 4 C CM MPD . . . E 5 4.089 -7.613 9.683 1 32.48 ? CM MPD 904 A 1 HETATM 5 C C3 MPD . . . E 5 5.221 -6.575 11.555 1 39.87 ? C3 MPD 904 A 1 HETATM 6 C C4 MPD . . . E 5 5.938 -7.233 12.736 1 40.75 ? C4 MPD 904 A 1 HETATM 7 O O4 MPD . . . E 5 7.208 -7.684 12.404 1 25.42 ? O4 MPD 904 A 1 HETATM 8 C C5 MPD . . . E 5 6.117 -6.314 13.925 1 35.09 ? C5 MPD 904 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #