data_7EVZ
#
_model_server_result.job_id            idFUonkzwvsjQfzHpCu8Yg 
_model_server_result.datetime_utc      '2024-12-26 21:54:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7evz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    7EVZ 
#
_exptl.entry_id    7EVZ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              453.531 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{S})-3-[4-[5-(2-cyclopentyl-6-methoxy-pyridin-4-yl)-1,2,4-oxadiazol-3-yl]-2-ethyl-6-methyl-phenoxy]propane-1,2-diol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7EVZ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7EVZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 368 D CYS 184 1_555 D SG CYS 375 D CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 D SG CYS 466 D CYS 282 1_555 D SG CYS 471 D CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 E SG CYS 159 E CYS 159 1_555 E SG CYS 229 E CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C25 H31 N3 O5' 
_chem_comp.formula_weight    453.531 
_chem_comp.id                JER 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{S})-3-[4-[5-(2-cyclopentyl-6-methoxy-pyridin-4-yl)-1,2,4-oxadiazol-3-yl]-2-ethyl-6-methyl-phenoxy]propane-1,2-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C02 JER sing 171 n n 
C02 C03 JER sing 172 n n 
C03 O33 JER sing 173 n n 
C03 C04 JER sing 174 n n 
C14 C13 JER sing 175 n n 
O05 C04 JER sing 176 n n 
O05 C06 JER sing 177 n n 
C13 C12 JER sing 178 n n 
C06 C12 JER doub 179 n y 
C06 C07 JER sing 180 n y 
C12 C11 JER sing 181 n y 
C08 C07 JER sing 182 n n 
C07 C09 JER doub 183 n y 
C11 C10 JER doub 184 n y 
C09 C10 JER sing 185 n y 
C10 C15 JER sing 186 n n 
C15 N19 JER sing 187 n y 
C15 N16 JER doub 188 n y 
N19 C18 JER doub 189 n y 
N16 O17 JER sing 190 n y 
C21 C20 JER doub 191 n y 
C21 C22 JER sing 192 n y 
C18 O17 JER sing 193 n y 
C18 C20 JER sing 194 n n 
O23 C24 JER sing 195 n n 
O23 C22 JER sing 196 n n 
C20 C27 JER sing 197 n y 
C22 N25 JER doub 198 n y 
N25 C26 JER sing 199 n y 
C27 C26 JER doub 200 n y 
C26 C28 JER sing 201 n n 
C29 C28 JER sing 202 n n 
C29 C30 JER sing 203 n n 
C28 C32 JER sing 204 n n 
C30 C31 JER sing 205 n n 
C32 C31 JER sing 206 n n 
C13 H1 JER sing 207 n n 
C13 H2 JER sing 208 n n 
C11 H3 JER sing 209 n n 
C02 H4 JER sing 210 n n 
C02 H5 JER sing 211 n n 
C03 H6 JER sing 212 n n 
C04 H7 JER sing 213 n n 
C04 H8 JER sing 214 n n 
C08 H9 JER sing 215 n n 
C08 H10 JER sing 216 n n 
C08 H11 JER sing 217 n n 
C09 H12 JER sing 218 n n 
C14 H13 JER sing 219 n n 
C14 H14 JER sing 220 n n 
C14 H15 JER sing 221 n n 
C21 H16 JER sing 222 n n 
C24 H17 JER sing 223 n n 
C24 H18 JER sing 224 n n 
C24 H19 JER sing 225 n n 
C27 H20 JER sing 226 n n 
C28 H21 JER sing 227 n n 
C29 H22 JER sing 228 n n 
C29 H23 JER sing 229 n n 
C30 H24 JER sing 230 n n 
C30 H25 JER sing 231 n n 
C31 H26 JER sing 232 n n 
C31 H27 JER sing 233 n n 
C32 H28 JER sing 234 n n 
C32 H29 JER sing 235 n n 
O01 H30 JER sing 236 n n 
O33 H31 JER sing 237 n n 
#
_atom_sites.entry_id                     7EVZ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 JER D 1 401 401 JER CEN . 
G 7 PLM D 1 402 501 PLM PLM . 
H 7 PLM D 1 403 601 PLM PLM . 
I 7 PLM D 1 404 901 PLM PLM . 
J 7 PLM D 1 405 1101 PLM PLM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 JER . . . F 6 105.716 111.145 69.969 1 118.17 ? C13 JER 401 D 1 
HETATM 2 C C15 JER . . . F 6 106.487 113.393 74.279 1 118.17 ? C15 JER 401 D 1 
HETATM 3 C C11 JER . . . F 6 106.07 112.325 72.19 1 118.17 ? C11 JER 401 D 1 
HETATM 4 C C10 JER . . . F 6 105.674 113.222 73.184 1 118.17 ? C10 JER 401 D 1 
HETATM 5 C C02 JER . . . F 6 101.671 113.081 67.544 1 118.17 ? C02 JER 401 D 1 
HETATM 6 C C03 JER . . . F 6 101.38 111.982 68.586 1 118.17 ? C03 JER 401 D 1 
HETATM 7 C C04 JER . . . F 6 101.914 112.38 69.983 1 118.17 ? C04 JER 401 D 1 
HETATM 8 C C06 JER . . . F 6 104.082 112.868 70.94 1 118.17 ? C06 JER 401 D 1 
HETATM 9 C C07 JER . . . F 6 103.691 113.777 71.929 1 118.17 ? C07 JER 401 D 1 
HETATM 10 C C08 JER . . . F 6 102.37 114.568 71.761 1 118.17 ? C08 JER 401 D 1 
HETATM 11 C C09 JER . . . F 6 104.484 113.962 73.057 1 118.17 ? C09 JER 401 D 1 
HETATM 12 C C12 JER . . . F 6 105.279 112.143 71.07 1 118.17 ? C12 JER 401 D 1 
HETATM 13 C C14 JER . . . F 6 106.724 111.785 69.001 1 118.17 ? C14 JER 401 D 1 
HETATM 14 C C18 JER . . . F 6 108.158 113.24 75.607 1 118.17 ? C18 JER 401 D 1 
HETATM 15 C C20 JER . . . F 6 109.383 112.908 76.162 1 118.17 ? C20 JER 401 D 1 
HETATM 16 C C21 JER . . . F 6 110.202 111.942 75.597 1 118.17 ? C21 JER 401 D 1 
HETATM 17 C C22 JER . . . F 6 111.423 111.661 76.182 1 118.17 ? C22 JER 401 D 1 
HETATM 18 C C24 JER . . . F 6 111.933 109.363 76.098 1 118.17 ? C24 JER 401 D 1 
HETATM 19 C C26 JER . . . F 6 111.088 113.233 77.828 1 118.17 ? C26 JER 401 D 1 
HETATM 20 C C27 JER . . . F 6 109.858 113.563 77.291 1 118.17 ? C27 JER 401 D 1 
HETATM 21 C C28 JER . . . F 6 111.598 113.968 79.094 1 118.17 ? C28 JER 401 D 1 
HETATM 22 C C29 JER . . . F 6 112.926 114.081 78.853 1 118.17 ? C29 JER 401 D 1 
HETATM 23 C C30 JER . . . F 6 113.573 114.305 80.283 1 118.17 ? C30 JER 401 D 1 
HETATM 24 C C31 JER . . . F 6 112.595 113.553 81.278 1 118.17 ? C31 JER 401 D 1 
HETATM 25 C C32 JER . . . F 6 111.46 113.269 80.583 1 118.17 ? C32 JER 401 D 1 
HETATM 26 N N16 JER . . . F 6 106.214 114.152 75.293 1 118.17 ? N16 JER 401 D 1 
HETATM 27 N N19 JER . . . F 6 107.672 112.842 74.451 1 118.17 ? N19 JER 401 D 1 
HETATM 28 N N25 JER . . . F 6 111.823 112.302 77.264 1 118.17 ? N25 JER 401 D 1 
HETATM 29 O O01 JER . . . F 6 100.818 112.923 66.441 1 118.17 ? O01 JER 401 D 1 
HETATM 30 O O05 JER . . . F 6 103.294 112.678 69.78 1 118.17 ? O05 JER 401 D 1 
HETATM 31 O O17 JER . . . F 6 107.271 114.06 76.145 1 118.17 ? O17 JER 401 D 1 
HETATM 32 O O23 JER . . . F 6 112.26 110.666 75.636 1 118.17 ? O23 JER 401 D 1 
HETATM 33 O O33 JER . . . F 6 99.993 111.825 68.692 1 118.17 ? O33 JER 401 D 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#