data_7EWH
#
_model_server_result.job_id            bZDmu6YbkH8axxO50dMC3Q 
_model_server_result.datetime_utc      '2024-12-10 08:32:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ewh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":400}' 
#
_entry.id    7EWH 
#
_exptl.entry_id    7EWH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              545.621 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.72 
_cell.angle_gamma         90 
_cell.entry_id            7EWH 
_cell.length_a            43.165 
_cell.length_b            120.639 
_cell.length_c            59.48 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7EWH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C29 H39 N O9' 
_chem_comp.formula_weight    545.621 
_chem_comp.id                HMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Homoharringtonine;Cephalotaxine;[3(R)]-4-methyl 2-hydroxy-2-(4-hydroxy-4-methylpentyl)butanedioate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 H18 HMT sing 150 n n 
C18 H18A HMT sing 151 n n 
C18 H18B HMT sing 152 n n 
O3 C18 HMT sing 153 n n 
O3 C2 HMT sing 154 n n 
C2 C1 HMT doub 155 n n 
C1 C9 HMT sing 156 n n 
C1 H1 HMT sing 157 n n 
C9 N1 HMT sing 158 n n 
C12 C9 HMT sing 159 n n 
C12 C11 HMT sing 160 n n 
C12 H12 HMT sing 161 n n 
C12 H12A HMT sing 162 n n 
C11 C10 HMT sing 163 n n 
C11 H11 HMT sing 164 n n 
C11 H11A HMT sing 165 n n 
C10 H10 HMT sing 166 n n 
C10 H10A HMT sing 167 n n 
N1 C10 HMT sing 168 n n 
N1 C8 HMT sing 169 n n 
C8 H8 HMT sing 170 n n 
C8 H8A HMT sing 171 n n 
C7 C8 HMT sing 172 n n 
C7 H7 HMT sing 173 n n 
C7 H7A HMT sing 174 n n 
C6 C7 HMT sing 175 n n 
C6 C16 HMT sing 176 n y 
C16 H16 HMT sing 177 n n 
C15 C16 HMT doub 178 n y 
C15 O2 HMT sing 179 n n 
C17 O2 HMT sing 180 n n 
C17 H17 HMT sing 181 n n 
C17 H17A HMT sing 182 n n 
O1 C17 HMT sing 183 n n 
C14 C15 HMT sing 184 n y 
C14 O1 HMT sing 185 n n 
C13 C14 HMT doub 186 n y 
C13 C5 HMT sing 187 n y 
C13 H13 HMT sing 188 n n 
C5 C6 HMT doub 189 n y 
C4 C9 HMT sing 190 n n 
C4 C5 HMT sing 191 n n 
C4 H4 HMT sing 192 n n 
C3 C2 HMT sing 193 n n 
C3 C4 HMT sing 194 n n 
C3 O4 HMT sing 195 n n 
C3 H3 HMT sing 196 n n 
C19 O4 HMT sing 197 n n 
C19 C20 HMT sing 198 n n 
O5 C19 HMT doub 199 n n 
C20 C24 HMT sing 200 n n 
C20 C21 HMT sing 201 n n 
C21 H21 HMT sing 202 n n 
C21 H21A HMT sing 203 n n 
C22 C21 HMT sing 204 n n 
C22 O7 HMT sing 205 n n 
O8 C22 HMT doub 206 n n 
C23 O7 HMT sing 207 n n 
C23 H23 HMT sing 208 n n 
C23 H23A HMT sing 209 n n 
C23 H23B HMT sing 210 n n 
O6 C20 HMT sing 211 n n 
O6 HO6 HMT sing 212 n n 
C24 H24 HMT sing 213 n n 
C24 H24A HMT sing 214 n n 
C25 C24 HMT sing 215 n n 
C25 C26 HMT sing 216 n n 
C25 H25 HMT sing 217 n n 
C25 H25A HMT sing 218 n n 
C26 H26 HMT sing 219 n n 
C26 H26A HMT sing 220 n n 
C27 C26 HMT sing 221 n n 
C27 O9 HMT sing 222 n n 
C28 C27 HMT sing 223 n n 
C28 H28 HMT sing 224 n n 
C28 H28A HMT sing 225 n n 
C28 H28B HMT sing 226 n n 
C29 C27 HMT sing 227 n n 
C29 H29 HMT sing 228 n n 
C29 H29A HMT sing 229 n n 
C29 H29B HMT sing 230 n n 
O9 HO9 HMT sing 231 n n 
#
_atom_sites.entry_id                     7EWH 
_atom_sites.fract_transf_matrix[1][1]    0.023167 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004385 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008289 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017111 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HMT A 1 400 400 HMT HMT . 
D 2 HMT B 1 400 400 HMT HMT . 
E 3 HOH A 1 501 20 HOH HOH . 
E 3 HOH A 2 502 1 HOH HOH . 
E 3 HOH A 3 503 2 HOH HOH . 
E 3 HOH A 4 504 14 HOH HOH . 
E 3 HOH A 5 505 21 HOH HOH . 
E 3 HOH A 6 506 15 HOH HOH . 
E 3 HOH A 7 507 8 HOH HOH . 
E 3 HOH A 8 508 5 HOH HOH . 
E 3 HOH A 9 509 26 HOH HOH . 
E 3 HOH A 10 510 11 HOH HOH . 
E 3 HOH A 11 511 25 HOH HOH . 
E 3 HOH A 12 512 18 HOH HOH . 
F 3 HOH B 1 501 4 HOH HOH . 
F 3 HOH B 2 502 7 HOH HOH . 
F 3 HOH B 3 503 17 HOH HOH . 
F 3 HOH B 4 504 24 HOH HOH . 
F 3 HOH B 5 505 22 HOH HOH . 
F 3 HOH B 6 506 6 HOH HOH . 
F 3 HOH B 7 507 9 HOH HOH . 
F 3 HOH B 8 508 16 HOH HOH . 
F 3 HOH B 9 509 19 HOH HOH . 
F 3 HOH B 10 510 10 HOH HOH . 
F 3 HOH B 11 511 12 HOH HOH . 
F 3 HOH B 12 512 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 HMT . . . C 2 -2.849 -12.272 -4.826 1 36.76 ? C18 HMT 400 A 1 
HETATM 2 O O3 HMT . . . C 2 -2.274 -13.492 -5.248 1 45.11 ? O3 HMT 400 A 1 
HETATM 3 C C2 HMT . . . C 2 -0.877 -13.619 -5.057 1 39.8 ? C2 HMT 400 A 1 
HETATM 4 C C1 HMT . . . C 2 -0.233 -14.722 -4.276 1 36.6 ? C1 HMT 400 A 1 
HETATM 5 C C9 HMT . . . C 2 1.069 -14.2 -3.714 1 37.36 ? C9 HMT 400 A 1 
HETATM 6 C C12 HMT . . . C 2 2.322 -14.929 -4.223 1 55.88 ? C12 HMT 400 A 1 
HETATM 7 C C11 HMT . . . C 2 3.418 -14.909 -3.138 1 49.98 ? C11 HMT 400 A 1 
HETATM 8 C C10 HMT . . . C 2 2.896 -13.977 -2.032 1 30.48 ? C10 HMT 400 A 1 
HETATM 9 N N1 HMT . . . C 2 1.416 -13.93 -2.289 1 26.59 ? N1 HMT 400 A 1 
HETATM 10 C C8 HMT . . . C 2 0.381 -13.261 -1.56 1 31.17 ? C8 HMT 400 A 1 
HETATM 11 C C7 HMT . . . C 2 -0.085 -12.073 -2.365 1 35.55 ? C7 HMT 400 A 1 
HETATM 12 C C6 HMT . . . C 2 1.055 -11.269 -2.968 1 39.92 ? C6 HMT 400 A 1 
HETATM 13 C C16 HMT . . . C 2 1.42 -9.904 -2.326 1 44.3 ? C16 HMT 400 A 1 
HETATM 14 C C15 HMT . . . C 2 2.591 -9.051 -2.936 1 49.72 ? C15 HMT 400 A 1 
HETATM 15 O O2 HMT . . . C 2 3.149 -7.781 -2.564 1 55.93 ? O2 HMT 400 A 1 
HETATM 16 C C17 HMT . . . C 2 4.365 -7.734 -3.182 1 47.02 ? C17 HMT 400 A 1 
HETATM 17 O O1 HMT . . . C 2 4.265 -8.656 -4.421 1 45.58 ? O1 HMT 400 A 1 
HETATM 18 C C14 HMT . . . C 2 3.352 -9.536 -4.131 1 48.01 ? C14 HMT 400 A 1 
HETATM 19 C C13 HMT . . . C 2 2.964 -10.926 -4.765 1 45.92 ? C13 HMT 400 A 1 
HETATM 20 C C5 HMT . . . C 2 1.803 -11.763 -4.163 1 44.83 ? C5 HMT 400 A 1 
HETATM 21 C C4 HMT . . . C 2 1.437 -13.091 -4.778 1 41.62 ? C4 HMT 400 A 1 
HETATM 22 C C3 HMT . . . C 2 0.228 -12.84 -5.729 1 37.24 ? C3 HMT 400 A 1 
HETATM 23 O O4 HMT . . . C 2 0.022 -11.447 -5.894 1 38.59 ? O4 HMT 400 A 1 
HETATM 24 C C19 HMT . . . C 2 -0.045 -10.83 -7.228 1 39.03 ? C19 HMT 400 A 1 
HETATM 25 O O5 HMT . . . C 2 -1.011 -10.256 -7.63 1 40.94 ? O5 HMT 400 A 1 
HETATM 26 C C20 HMT . . . C 2 1.148 -10.907 -8.166 1 37.67 ? C20 HMT 400 A 1 
HETATM 27 C C21 HMT . . . C 2 1.109 -10.013 -9.402 1 33.6 ? C21 HMT 400 A 1 
HETATM 28 C C22 HMT . . . C 2 2.511 -9.352 -9.625 1 38.45 ? C22 HMT 400 A 1 
HETATM 29 O O8 HMT . . . C 2 3.147 -9.018 -8.672 1 37.54 ? O8 HMT 400 A 1 
HETATM 30 O O7 HMT . . . C 2 3.026 -9.11 -10.941 1 36.75 ? O7 HMT 400 A 1 
HETATM 31 C C23 HMT . . . C 2 4.41 -9.299 -11.195 1 24.24 ? C23 HMT 400 A 1 
HETATM 32 O O6 HMT . . . C 2 2.257 -10.538 -7.396 1 34.82 ? O6 HMT 400 A 1 
HETATM 33 C C24 HMT . . . C 2 1.158 -12.349 -8.708 1 43.54 ? C24 HMT 400 A 1 
HETATM 34 C C25 HMT . . . C 2 -0.154 -12.573 -9.539 1 45.07 ? C25 HMT 400 A 1 
HETATM 35 C C26 HMT . . . C 2 -1.193 -13.463 -8.778 1 43.87 ? C26 HMT 400 A 1 
HETATM 36 C C27 HMT . . . C 2 -0.951 -14.959 -9.158 1 58.02 ? C27 HMT 400 A 1 
HETATM 37 C C28 HMT . . . C 2 0.045 -15.585 -8.132 1 51.86 ? C28 HMT 400 A 1 
HETATM 38 C C29 HMT . . . C 2 -2.326 -15.703 -9.155 1 43.65 ? C29 HMT 400 A 1 
HETATM 39 O O9 HMT . . . C 2 -0.367 -15.015 -10.451 1 58.12 ? O9 HMT 400 A 1 
#
_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           130 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           39 
#