data_7EWH
#
_model_server_result.job_id            Yiccstl81WbmW4cEe642Ng 
_model_server_result.datetime_utc      '2024-12-09 23:57:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ewh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":400}' 
#
_entry.id    7EWH 
#
_exptl.entry_id    7EWH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              545.621 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.72 
_cell.angle_gamma         90 
_cell.entry_id            7EWH 
_cell.length_a            43.165 
_cell.length_b            120.639 
_cell.length_c            59.48 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7EWH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C29 H39 N O9' 
_chem_comp.formula_weight    545.621 
_chem_comp.id                HMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Homoharringtonine;Cephalotaxine;[3(R)]-4-methyl 2-hydroxy-2-(4-hydroxy-4-methylpentyl)butanedioate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 H18 HMT sing 150 n n 
C18 H18A HMT sing 151 n n 
C18 H18B HMT sing 152 n n 
O3 C18 HMT sing 153 n n 
O3 C2 HMT sing 154 n n 
C2 C1 HMT doub 155 n n 
C1 C9 HMT sing 156 n n 
C1 H1 HMT sing 157 n n 
C9 N1 HMT sing 158 n n 
C12 C9 HMT sing 159 n n 
C12 C11 HMT sing 160 n n 
C12 H12 HMT sing 161 n n 
C12 H12A HMT sing 162 n n 
C11 C10 HMT sing 163 n n 
C11 H11 HMT sing 164 n n 
C11 H11A HMT sing 165 n n 
C10 H10 HMT sing 166 n n 
C10 H10A HMT sing 167 n n 
N1 C10 HMT sing 168 n n 
N1 C8 HMT sing 169 n n 
C8 H8 HMT sing 170 n n 
C8 H8A HMT sing 171 n n 
C7 C8 HMT sing 172 n n 
C7 H7 HMT sing 173 n n 
C7 H7A HMT sing 174 n n 
C6 C7 HMT sing 175 n n 
C6 C16 HMT sing 176 n y 
C16 H16 HMT sing 177 n n 
C15 C16 HMT doub 178 n y 
C15 O2 HMT sing 179 n n 
C17 O2 HMT sing 180 n n 
C17 H17 HMT sing 181 n n 
C17 H17A HMT sing 182 n n 
O1 C17 HMT sing 183 n n 
C14 C15 HMT sing 184 n y 
C14 O1 HMT sing 185 n n 
C13 C14 HMT doub 186 n y 
C13 C5 HMT sing 187 n y 
C13 H13 HMT sing 188 n n 
C5 C6 HMT doub 189 n y 
C4 C9 HMT sing 190 n n 
C4 C5 HMT sing 191 n n 
C4 H4 HMT sing 192 n n 
C3 C2 HMT sing 193 n n 
C3 C4 HMT sing 194 n n 
C3 O4 HMT sing 195 n n 
C3 H3 HMT sing 196 n n 
C19 O4 HMT sing 197 n n 
C19 C20 HMT sing 198 n n 
O5 C19 HMT doub 199 n n 
C20 C24 HMT sing 200 n n 
C20 C21 HMT sing 201 n n 
C21 H21 HMT sing 202 n n 
C21 H21A HMT sing 203 n n 
C22 C21 HMT sing 204 n n 
C22 O7 HMT sing 205 n n 
O8 C22 HMT doub 206 n n 
C23 O7 HMT sing 207 n n 
C23 H23 HMT sing 208 n n 
C23 H23A HMT sing 209 n n 
C23 H23B HMT sing 210 n n 
O6 C20 HMT sing 211 n n 
O6 HO6 HMT sing 212 n n 
C24 H24 HMT sing 213 n n 
C24 H24A HMT sing 214 n n 
C25 C24 HMT sing 215 n n 
C25 C26 HMT sing 216 n n 
C25 H25 HMT sing 217 n n 
C25 H25A HMT sing 218 n n 
C26 H26 HMT sing 219 n n 
C26 H26A HMT sing 220 n n 
C27 C26 HMT sing 221 n n 
C27 O9 HMT sing 222 n n 
C28 C27 HMT sing 223 n n 
C28 H28 HMT sing 224 n n 
C28 H28A HMT sing 225 n n 
C28 H28B HMT sing 226 n n 
C29 C27 HMT sing 227 n n 
C29 H29 HMT sing 228 n n 
C29 H29A HMT sing 229 n n 
C29 H29B HMT sing 230 n n 
O9 HO9 HMT sing 231 n n 
#
_atom_sites.entry_id                     7EWH 
_atom_sites.fract_transf_matrix[1][1]    0.023167 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004385 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008289 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017111 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HMT A 1 400 400 HMT HMT . 
D 2 HMT B 1 400 400 HMT HMT . 
E 3 HOH A 1 501 20 HOH HOH . 
E 3 HOH A 2 502 1 HOH HOH . 
E 3 HOH A 3 503 2 HOH HOH . 
E 3 HOH A 4 504 14 HOH HOH . 
E 3 HOH A 5 505 21 HOH HOH . 
E 3 HOH A 6 506 15 HOH HOH . 
E 3 HOH A 7 507 8 HOH HOH . 
E 3 HOH A 8 508 5 HOH HOH . 
E 3 HOH A 9 509 26 HOH HOH . 
E 3 HOH A 10 510 11 HOH HOH . 
E 3 HOH A 11 511 25 HOH HOH . 
E 3 HOH A 12 512 18 HOH HOH . 
F 3 HOH B 1 501 4 HOH HOH . 
F 3 HOH B 2 502 7 HOH HOH . 
F 3 HOH B 3 503 17 HOH HOH . 
F 3 HOH B 4 504 24 HOH HOH . 
F 3 HOH B 5 505 22 HOH HOH . 
F 3 HOH B 6 506 6 HOH HOH . 
F 3 HOH B 7 507 9 HOH HOH . 
F 3 HOH B 8 508 16 HOH HOH . 
F 3 HOH B 9 509 19 HOH HOH . 
F 3 HOH B 10 510 10 HOH HOH . 
F 3 HOH B 11 511 12 HOH HOH . 
F 3 HOH B 12 512 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 HMT . . . D 2 2.406 13.389 27.173 1 55.73 ? C18 HMT 400 B 1 
HETATM 2 O O3 HMT . . . D 2 3.604 13.631 27.892 1 54.8 ? O3 HMT 400 B 1 
HETATM 3 C C2 HMT . . . D 2 4.353 12.48 28.182 1 48.86 ? C2 HMT 400 B 1 
HETATM 4 C C1 HMT . . . D 2 5.805 12.327 27.831 1 54.51 ? C1 HMT 400 B 1 
HETATM 5 C C9 HMT . . . D 2 6.138 10.855 27.748 1 43.05 ? C9 HMT 400 B 1 
HETATM 6 C C12 HMT . . . D 2 7.17 10.209 28.69 1 47.39 ? C12 HMT 400 B 1 
HETATM 7 C C11 HMT . . . D 2 7.981 9.139 27.935 1 35.15 ? C11 HMT 400 B 1 
HETATM 8 C C10 HMT . . . D 2 7.201 8.913 26.636 1 30.11 ? C10 HMT 400 B 1 
HETATM 9 N N1 HMT . . . D 2 6.396 10.178 26.491 1 25.99 ? N1 HMT 400 B 1 
HETATM 10 C C8 HMT . . . D 2 5.607 10.825 25.478 1 41.44 ? C8 HMT 400 B 1 
HETATM 11 C C7 HMT . . . D 2 4.167 10.497 25.793 1 44.55 ? C7 HMT 400 B 1 
HETATM 12 C C6 HMT . . . D 2 3.965 9.195 26.563 1 45.31 ? C6 HMT 400 B 1 
HETATM 13 C C16 HMT . . . D 2 3.309 7.979 25.875 1 42.01 ? C16 HMT 400 B 1 
HETATM 14 C C15 HMT . . . D 2 3.119 6.652 26.691 1 47.96 ? C15 HMT 400 B 1 
HETATM 15 O O2 HMT . . . D 2 2.573 5.363 26.376 1 57.78 ? O2 HMT 400 B 1 
HETATM 16 C C17 HMT . . . D 2 2.177 4.876 27.592 1 55.05 ? C17 HMT 400 B 1 
HETATM 17 O O1 HMT . . . D 2 3.288 5.347 28.555 1 46.46 ? O1 HMT 400 B 1 
HETATM 18 C C14 HMT . . . D 2 3.551 6.539 28.122 1 47.27 ? C14 HMT 400 B 1 
HETATM 19 C C13 HMT . . . D 2 4.2 7.784 28.802 1 49.93 ? C13 HMT 400 B 1 
HETATM 20 C C5 HMT . . . D 2 4.386 9.081 27.992 1 49.2 ? C5 HMT 400 B 1 
HETATM 21 C C4 HMT . . . D 2 5.035 10.239 28.685 1 48.73 ? C4 HMT 400 B 1 
HETATM 22 C C3 HMT . . . D 2 3.966 11.321 29.07 1 43.98 ? C3 HMT 400 B 1 
HETATM 23 O O4 HMT . . . D 2 2.64 10.855 28.905 1 48.77 ? O4 HMT 400 B 1 
HETATM 24 C C19 HMT . . . D 2 1.67 10.805 30.025 1 57.04 ? C19 HMT 400 B 1 
HETATM 25 O O5 HMT . . . D 2 0.594 11.336 29.957 1 53.15 ? O5 HMT 400 B 1 
HETATM 26 C C20 HMT . . . D 2 2 10.066 31.34 1 50.17 ? C20 HMT 400 B 1 
HETATM 27 C C21 HMT . . . D 2 0.825 9.711 32.254 1 39.63 ? C21 HMT 400 B 1 
HETATM 28 C C22 HMT . . . D 2 1.313 8.396 32.953 1 43.79 ? C22 HMT 400 B 1 
HETATM 29 O O8 HMT . . . D 2 1.719 7.518 32.285 1 40.99 ? O8 HMT 400 B 1 
HETATM 30 O O7 HMT . . . D 2 1.341 8.152 34.345 1 47.22 ? O7 HMT 400 B 1 
HETATM 31 C C23 HMT . . . D 2 1.924 6.905 34.692 1 27.49 ? C23 HMT 400 B 1 
HETATM 32 O O6 HMT . . . D 2 2.656 8.856 31.032 1 38.55 ? O6 HMT 400 B 1 
HETATM 33 C C24 HMT . . . D 2 2.932 10.985 32.171 1 68.52 ? C24 HMT 400 B 1 
HETATM 34 C C25 HMT . . . D 2 2.375 12.463 32.3 1 68.96 ? C25 HMT 400 B 1 
HETATM 35 C C26 HMT . . . D 2 3.136 13.462 31.345 1 67.57 ? C26 HMT 400 B 1 
HETATM 36 C C27 HMT . . . D 2 4.563 13.889 31.86 1 70.99 ? C27 HMT 400 B 1 
HETATM 37 C C28 HMT . . . D 2 5.705 13.307 30.986 1 55.48 ? C28 HMT 400 B 1 
HETATM 38 C C29 HMT . . . D 2 4.616 15.442 31.796 1 73.86 ? C29 HMT 400 B 1 
HETATM 39 O O9 HMT . . . D 2 4.807 13.459 33.187 1 52.21 ? O9 HMT 400 B 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           39 
#