data_7EX2 # _model_server_result.job_id NtaQakYX4xMv51EIFdUqGw _model_server_result.datetime_utc '2024-11-28 12:05:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ex2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7EX2 # _exptl.entry_id 7EX2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.06 _cell.angle_gamma 90 _cell.entry_id 7EX2 _cell.length_a 40.409 _cell.length_b 70.804 _cell.length_c 69.86 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EX2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 70 A HIS 34 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc2 A OD1 ASN 88 A ASN 52 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc3 A OD1 ASP 115 A ASP 79 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc4 A OD2 ASP 115 A ASP 79 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc5 A OD2 ASP 128 A ASP 92 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc6 A O TYR 129 A TYR 93 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc7 C MN MN . A MN 201 1_555 E O6 I0N . A I0N 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc8 C MN MN . A MN 201 1_555 E O9 I0N . A I0N 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc9 D MN MN . A MN 202 1_555 E O2 I0N . A I0N 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc10 D MN MN . A MN 202 1_555 E O6 I0N . A I0N 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc11 B NE2 HIS 70 B HIS 34 1_555 G MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc12 B OD1 ASN 88 B ASN 52 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc13 B OD1 ASP 115 B ASP 79 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc14 B OD2 ASP 115 B ASP 79 1_555 G MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc15 B OD2 ASP 128 B ASP 92 1_555 G MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc16 B O TYR 129 B TYR 93 1_555 G MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc17 F MN MN . B MN 201 1_555 H O6 I0N . B I0N 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc18 F MN MN . B MN 201 1_555 H O9 I0N . B I0N 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc19 G MN MN . B MN 202 1_555 H O2 I0N . B I0N 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc20 G MN MN . B MN 202 1_555 H O6 I0N . B I0N 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7EX2 _atom_sites.fract_transf_matrix[1][1] 0.024747 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000027 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014123 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 201 190 MN MN . D 2 MN A 1 202 191 MN MN . E 3 I0N A 1 203 192 I0N I0N . F 2 MN B 1 201 190 MN MN . G 2 MN B 1 202 191 MN MN . H 3 I0N B 1 203 192 I0N I0N . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 2.664 _atom_site.Cartn_y -12.234 _atom_site.Cartn_z 15.745 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #