data_7EX2 # _model_server_result.job_id tljFuaIO0ubqvqU0sbfKMw _model_server_result.datetime_utc '2024-11-24 18:20:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ex2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 7EX2 # _exptl.entry_id 7EX2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.921 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (Z)-4-[4-[(4-chlorophenyl)methyl]-1-(phenylmethyl)piperidin-4-yl]-2-oxidanyl-4-oxidanylidene-but-2-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.06 _cell.angle_gamma 90 _cell.entry_id 7EX2 _cell.length_a 40.409 _cell.length_b 70.804 _cell.length_c 69.86 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EX2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 70 A HIS 34 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc2 A OD1 ASN 88 A ASN 52 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc3 A OD1 ASP 115 A ASP 79 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc4 A OD2 ASP 115 A ASP 79 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc5 A OD2 ASP 128 A ASP 92 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc6 A O TYR 129 A TYR 93 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc7 C MN MN . A MN 201 1_555 E O6 I0N . A I0N 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc8 C MN MN . A MN 201 1_555 E O9 I0N . A I0N 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc9 D MN MN . A MN 202 1_555 E O2 I0N . A I0N 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc10 D MN MN . A MN 202 1_555 E O6 I0N . A I0N 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc11 B NE2 HIS 70 B HIS 34 1_555 G MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc12 B OD1 ASN 88 B ASN 52 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc13 B OD1 ASP 115 B ASP 79 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc14 B OD2 ASP 115 B ASP 79 1_555 G MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc15 B OD2 ASP 128 B ASP 92 1_555 G MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc16 B O TYR 129 B TYR 93 1_555 G MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc17 F MN MN . B MN 201 1_555 H O6 I0N . B I0N 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc18 F MN MN . B MN 201 1_555 H O9 I0N . B I0N 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc19 G MN MN . B MN 202 1_555 H O2 I0N . B I0N 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc20 G MN MN . B MN 202 1_555 H O6 I0N . B I0N 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? # _chem_comp.formula 'C24 H26 Cl N O4' _chem_comp.formula_weight 427.921 _chem_comp.id I0N _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (Z)-4-[4-[(4-chlorophenyl)methyl]-1-(phenylmethyl)piperidin-4-yl]-2-oxidanyl-4-oxidanylidene-but-2-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C5 I0N sing 150 n n C1 O2 I0N sing 151 n n O2 C3 I0N sing 152 n n O9 C8 I0N doub 153 n n C13 C14 I0N doub 154 n y C13 C12 I0N sing 155 n y C14 C15 I0N sing 156 n y C5 C3 I0N sing 157 n n C5 C7 I0N doub 158 z n C3 O4 I0N doub 159 n n C8 C7 I0N sing 160 n n C8 C10 I0N sing 161 n n C12 C11 I0N sing 162 n n C12 C18 I0N doub 163 n y C15 CL I0N sing 164 n n C15 C17 I0N doub 165 n y C11 C10 I0N sing 166 n n C19 C10 I0N sing 167 n n C19 C20 I0N sing 168 n n C10 C30 I0N sing 169 n n C20 N21 I0N sing 170 n n C18 C17 I0N sing 171 n y C30 C29 I0N sing 172 n n N21 C29 I0N sing 173 n n N21 C22 I0N sing 174 n n C22 C23 I0N sing 175 n n C23 C24 I0N doub 176 n y C23 C28 I0N sing 177 n y C24 C25 I0N sing 178 n y C28 C27 I0N doub 179 n y C25 C26 I0N doub 180 n y C27 C26 I0N sing 181 n y C1 H1 I0N sing 182 n n C1 H2 I0N sing 183 n n C1 H3 I0N sing 184 n n C7 H4 I0N sing 185 n n C11 H5 I0N sing 186 n n C11 H6 I0N sing 187 n n C13 H7 I0N sing 188 n n C14 H8 I0N sing 189 n n C17 H9 I0N sing 190 n n C18 H10 I0N sing 191 n n C19 H11 I0N sing 192 n n C19 H12 I0N sing 193 n n C20 H13 I0N sing 194 n n C20 H14 I0N sing 195 n n C22 H15 I0N sing 196 n n C22 H16 I0N sing 197 n n C24 H17 I0N sing 198 n n C25 H18 I0N sing 199 n n C26 H19 I0N sing 200 n n C27 H20 I0N sing 201 n n C28 H21 I0N sing 202 n n C29 H22 I0N sing 203 n n C29 H23 I0N sing 204 n n C30 H24 I0N sing 205 n n C30 H25 I0N sing 206 n n O6 H27 I0N sing 207 n n # _atom_sites.entry_id 7EX2 _atom_sites.fract_transf_matrix[1][1] 0.024747 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000027 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014123 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 201 190 MN MN . D 2 MN A 1 202 191 MN MN . E 3 I0N A 1 203 192 I0N I0N . F 2 MN B 1 201 190 MN MN . G 2 MN B 1 202 191 MN MN . H 3 I0N B 1 203 192 I0N I0N . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I0N . . . E 3 -0.742 -16.103 16.953 1 41.08 ? C1 I0N 203 A 1 HETATM 2 C C3 I0N . . . E 3 -0.03 -14.6 18.561 1 36.13 ? C3 I0N 203 A 1 HETATM 3 C C5 I0N . . . E 3 1.265 -14.026 18.127 1 34.59 ? C5 I0N 203 A 1 HETATM 4 C C7 I0N . . . E 3 2.272 -13.707 18.952 1 30.66 ? C7 I0N 203 A 1 HETATM 5 C C8 I0N . . . E 3 3.599 -13.115 18.666 1 30.51 ? C8 I0N 203 A 1 HETATM 6 C C10 I0N . . . E 3 4.73 -13.393 19.591 1 32.54 ? C10 I0N 203 A 1 HETATM 7 C C11 I0N . . . E 3 5.478 -14.82 19.188 1 40.04 ? C11 I0N 203 A 1 HETATM 8 C C12 I0N . . . E 3 4.617 -16.079 19.122 1 32.49 ? C12 I0N 203 A 1 HETATM 9 C C13 I0N . . . E 3 4.01 -16.554 17.932 1 31.42 ? C13 I0N 203 A 1 HETATM 10 C C14 I0N . . . E 3 3.236 -17.732 17.937 1 32.1 ? C14 I0N 203 A 1 HETATM 11 C C15 I0N . . . E 3 3.097 -18.434 19.13 1 32.9 ? C15 I0N 203 A 1 HETATM 12 C C17 I0N . . . E 3 3.659 -17.993 20.331 1 33.26 ? C17 I0N 203 A 1 HETATM 13 C C18 I0N . . . E 3 4.403 -16.809 20.298 1 33.71 ? C18 I0N 203 A 1 HETATM 14 C C19 I0N . . . E 3 5.719 -12.209 19.584 1 29.13 ? C19 I0N 203 A 1 HETATM 15 C C20 I0N . . . E 3 5.105 -10.867 19.919 1 32.79 ? C20 I0N 203 A 1 HETATM 16 C C22 I0N . . . E 3 3.69 -9.607 21.389 1 37.55 ? C22 I0N 203 A 1 HETATM 17 C C23 I0N . . . E 3 3.502 -9.636 22.916 1 43.84 ? C23 I0N 203 A 1 HETATM 18 C C24 I0N . . . E 3 2.188 -9.333 23.427 1 49.2 ? C24 I0N 203 A 1 HETATM 19 C C25 I0N . . . E 3 1.994 -9.349 24.844 1 58.81 ? C25 I0N 203 A 1 HETATM 20 C C26 I0N . . . E 3 3.089 -9.698 25.729 1 54.56 ? C26 I0N 203 A 1 HETATM 21 C C27 I0N . . . E 3 4.38 -9.998 25.197 1 46.87 ? C27 I0N 203 A 1 HETATM 22 C C28 I0N . . . E 3 4.583 -9.897 23.807 1 46.29 ? C28 I0N 203 A 1 HETATM 23 C C29 I0N . . . E 3 3.49 -12.002 21.351 1 33.75 ? C29 I0N 203 A 1 HETATM 24 C C30 I0N . . . E 3 4.119 -13.349 21.021 1 31.56 ? C30 I0N 203 A 1 HETATM 25 N N21 I0N . . . E 3 4.388 -10.944 21.166 1 36.13 ? N21 I0N 203 A 1 HETATM 26 O O2 I0N . . . E 3 -0.914 -14.761 17.43 1 32.69 ? O2 I0N 203 A 1 HETATM 27 O O4 I0N . . . E 3 -0.398 -14.891 19.662 1 36.4 ? O4 I0N 203 A 1 HETATM 28 O O6 I0N . . . E 3 1.306 -13.71 16.75 1 35.52 ? O6 I0N 203 A 1 HETATM 29 O O9 I0N . . . E 3 3.824 -12.422 17.739 1 32.87 ? O9 I0N 203 A 1 HETATM 30 CL CL I0N . . . E 3 2.162 -19.885 19.141 1 37.22 ? CL I0N 203 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 30 #