data_7EXD # _model_server_result.job_id K28cgXvNTFdXkvWZ3x4EbA _model_server_result.datetime_utc '2025-02-05 08:54:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7exd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 7EXD # _exptl.entry_id 7EXD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 377.36 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,4,6-tris(fluoranyl)-N-[6-(1-methylpiperidin-4-yl)carbonylpyridin-2-yl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 22 E CYS 22 1_555 D SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 D SG CYS 159 E CYS 159 1_555 D SG CYS 229 E CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 E SG CYS 236 R CYS 96 1_555 E SG CYS 312 R CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C19 H18 F3 N3 O2' _chem_comp.formula_weight 377.36 _chem_comp.id 05X _chem_comp.mon_nstd_flag . _chem_comp.name 2,4,6-tris(fluoranyl)-N-[6-(1-methylpiperidin-4-yl)carbonylpyridin-2-yl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 05X doub 1 n y C14 C15 05X sing 2 n y C13 C12 05X sing 3 n y C15 C10 05X doub 4 n y C12 N16 05X sing 5 n n C12 N11 05X doub 6 n y O9 C8 05X doub 7 n n C10 N11 05X sing 8 n y C10 C8 05X sing 9 n n N16 C17 05X sing 10 n n F25 C24 05X sing 11 n n C8 C5 05X sing 12 n n C24 C23 05X doub 13 n y C24 C19 05X sing 14 n y C17 C19 05X sing 15 n n C17 O18 05X doub 16 n n C23 C22 05X sing 17 n y C19 C20 05X doub 18 n y C5 C6 05X sing 19 n n C5 C4 05X sing 20 n n C6 C7 05X sing 21 n n C4 C3 05X sing 22 n n C22 F26 05X sing 23 n n C22 C21 05X doub 24 n y C20 C21 05X sing 25 n y C20 F27 05X sing 26 n n C7 N2 05X sing 27 n n C3 N2 05X sing 28 n n N2 C1 05X sing 29 n n C13 H1 05X sing 30 n n C15 H2 05X sing 31 n n C21 H3 05X sing 32 n n C1 H4 05X sing 33 n n C1 H5 05X sing 34 n n C1 H6 05X sing 35 n n C3 H8 05X sing 36 n n C3 H9 05X sing 37 n n C4 H10 05X sing 38 n n C4 H11 05X sing 39 n n C5 H12 05X sing 40 n n C6 H13 05X sing 41 n n C6 H14 05X sing 42 n n C7 H15 05X sing 43 n n C7 H16 05X sing 44 n n C14 H17 05X sing 45 n n N16 H18 05X sing 46 n n C23 H19 05X sing 47 n n # _atom_sites.entry_id 7EXD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id 05X _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 501 _pdbx_nonpoly_scheme.pdb_mon_id 05X _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 05X . . . F 6 125.332 132.434 119.101 1 86.33 ? C10 05X 501 R 1 HETATM 2 C C13 05X . . . F 6 127.833 132.607 118.033 1 86.33 ? C13 05X 501 R 1 HETATM 3 C C15 05X . . . F 6 125.775 131.487 118.193 1 86.33 ? C15 05X 501 R 1 HETATM 4 C C17 05X . . . F 6 128.283 135.12 120.71 1 86.33 ? C17 05X 501 R 1 HETATM 5 C C20 05X . . . F 6 128.866 137.107 122.17 1 86.33 ? C20 05X 501 R 1 HETATM 6 C C21 05X . . . F 6 129.708 138.15 122.531 1 86.33 ? C21 05X 501 R 1 HETATM 7 C C22 05X . . . F 6 130.893 138.361 121.833 1 86.33 ? C22 05X 501 R 1 HETATM 8 C C24 05X . . . F 6 130.393 136.483 120.414 1 86.33 ? C24 05X 501 R 1 HETATM 9 C C1 05X . . . F 6 122.589 134.087 124.934 1 86.33 ? C1 05X 501 R 1 HETATM 10 N N2 05X . . . F 6 123.056 133.433 123.755 1 86.33 ? N2 05X 501 R 1 HETATM 11 C C3 05X . . . F 6 123.968 134.343 123.008 1 86.33 ? C3 05X 501 R 1 HETATM 12 C C4 05X . . . F 6 124.459 133.794 121.651 1 86.33 ? C4 05X 501 R 1 HETATM 13 C C5 05X . . . F 6 123.698 132.547 121.216 1 86.33 ? C5 05X 501 R 1 HETATM 14 C C6 05X . . . F 6 122.24 132.72 121.485 1 86.33 ? C6 05X 501 R 1 HETATM 15 C C7 05X . . . F 6 121.915 133.085 122.914 1 86.33 ? C7 05X 501 R 1 HETATM 16 C C8 05X . . . F 6 123.917 132.323 119.697 1 86.33 ? C8 05X 501 R 1 HETATM 17 O O9 05X . . . F 6 122.997 132.067 118.997 1 86.33 ? O9 05X 501 R 1 HETATM 18 N N11 05X . . . F 6 126.144 133.457 119.466 1 86.33 ? N11 05X 501 R 1 HETATM 19 C C12 05X . . . F 6 127.389 133.554 118.942 1 86.33 ? C12 05X 501 R 1 HETATM 20 C C14 05X . . . F 6 127.022 131.584 117.668 1 86.33 ? C14 05X 501 R 1 HETATM 21 N N16 05X . . . F 6 128.263 134.65 119.331 1 86.33 ? N16 05X 501 R 1 HETATM 22 O O18 05X . . . F 6 127.584 134.609 121.522 1 86.33 ? O18 05X 501 R 1 HETATM 23 C C19 05X . . . F 6 129.208 136.272 121.11 1 86.33 ? C19 05X 501 R 1 HETATM 24 C C23 05X . . . F 6 131.234 137.527 120.775 1 86.33 ? C23 05X 501 R 1 HETATM 25 F F25 05X . . . F 6 130.729 135.664 119.375 1 86.33 ? F25 05X 501 R 1 HETATM 26 F F26 05X . . . F 6 131.721 139.387 122.187 1 86.33 ? F26 05X 501 R 1 HETATM 27 F F27 05X . . . F 6 127.704 136.901 122.854 1 86.33 ? F27 05X 501 R 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #