data_7EXO # _model_server_result.job_id 62bNXtK9nKozymp6Vgbbuw _model_server_result.datetime_utc '2024-11-30 23:40:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7exo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 7EXO # _exptl.entry_id 7EXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EXO _cell.length_a 55.03 _cell.length_b 55.03 _cell.length_c 149.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 96 A GLU 104 1_555 I MN MN . A MN 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc2 A OD1 ASP 98 A ASP 106 1_555 H CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc3 A OD2 ASP 98 A ASP 106 1_555 H CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc4 A OD2 ASP 98 A ASP 106 1_555 I MN MN . A MN 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc5 A O TRP 100 A TRP 108 1_555 H CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc6 A OD1 ASN 102 A ASN 110 1_555 H CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc7 A OD2 ASP 105 A ASP 113 1_555 H CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc8 A OD1 ASP 105 A ASP 113 1_555 I MN MN . A MN 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc9 A NE2 HIS 112 A HIS 120 1_555 I MN MN . A MN 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc10 A NE2 HIS 123 A HIS 131 1_555 I MN MN . A MN 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BMA _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-mannopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BMA sing 76 n n C1 O1 BMA sing 77 n n C1 O5 BMA sing 78 n n C1 H1 BMA sing 79 n n C2 C3 BMA sing 80 n n C2 O2 BMA sing 81 n n C2 H2 BMA sing 82 n n C3 C4 BMA sing 83 n n C3 O3 BMA sing 84 n n C3 H3 BMA sing 85 n n C4 C5 BMA sing 86 n n C4 O4 BMA sing 87 n n C4 H4 BMA sing 88 n n C5 C6 BMA sing 89 n n C5 O5 BMA sing 90 n n C5 H5 BMA sing 91 n n C6 O6 BMA sing 92 n n C6 H61 BMA sing 93 n n C6 H62 BMA sing 94 n n O1 HO1 BMA sing 95 n n O2 HO2 BMA sing 96 n n O3 HO3 BMA sing 97 n n O4 HO4 BMA sing 98 n n O6 HO6 BMA sing 99 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BMA DManpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BMA b-D-mannopyranose 'COMMON NAME' GMML 1 BMA b-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BMA Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7EXO _atom_sites.fract_transf_matrix[1][1] 0.018172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 901 901 MPD MPD . C 3 BMA A 1 902 1101 BMA BMA . D 4 ACT A 1 903 1501 ACT ACT . E 2 MPD A 1 904 1601 MPD MPD . F 5 GOL A 1 905 202 GOL GOL . G 5 GOL A 1 906 203 GOL GOL . H 6 CA A 1 907 1 CA CA . I 7 MN A 1 908 1 MN MN . J 8 HOH A 1 1001 241 HOH HOH . J 8 HOH A 2 1002 286 HOH HOH . J 8 HOH A 3 1003 274 HOH HOH . J 8 HOH A 4 1004 283 HOH HOH . J 8 HOH A 5 1005 257 HOH HOH . J 8 HOH A 6 1006 109 HOH HOH . J 8 HOH A 7 1007 284 HOH HOH . J 8 HOH A 8 1008 229 HOH HOH . J 8 HOH A 9 1009 43 HOH HOH . J 8 HOH A 10 1010 54 HOH HOH . J 8 HOH A 11 1011 75 HOH HOH . J 8 HOH A 12 1012 80 HOH HOH . J 8 HOH A 13 1013 101 HOH HOH . J 8 HOH A 14 1014 256 HOH HOH . J 8 HOH A 15 1015 123 HOH HOH . J 8 HOH A 16 1016 53 HOH HOH . J 8 HOH A 17 1017 240 HOH HOH . J 8 HOH A 18 1018 71 HOH HOH . J 8 HOH A 19 1019 29 HOH HOH . J 8 HOH A 20 1020 260 HOH HOH . J 8 HOH A 21 1021 125 HOH HOH . J 8 HOH A 22 1022 102 HOH HOH . J 8 HOH A 23 1023 133 HOH HOH . J 8 HOH A 24 1024 9 HOH HOH . J 8 HOH A 25 1025 52 HOH HOH . J 8 HOH A 26 1026 56 HOH HOH . J 8 HOH A 27 1027 12 HOH HOH . J 8 HOH A 28 1028 23 HOH HOH . J 8 HOH A 29 1029 62 HOH HOH . J 8 HOH A 30 1030 2 HOH HOH . J 8 HOH A 31 1031 94 HOH HOH . J 8 HOH A 32 1032 242 HOH HOH . J 8 HOH A 33 1033 1 HOH HOH . J 8 HOH A 34 1034 150 HOH HOH . J 8 HOH A 35 1035 275 HOH HOH . J 8 HOH A 36 1036 244 HOH HOH . J 8 HOH A 37 1037 38 HOH HOH . J 8 HOH A 38 1038 282 HOH HOH . J 8 HOH A 39 1039 18 HOH HOH . J 8 HOH A 40 1040 117 HOH HOH . J 8 HOH A 41 1041 22 HOH HOH . J 8 HOH A 42 1042 3 HOH HOH . J 8 HOH A 43 1043 42 HOH HOH . J 8 HOH A 44 1044 30 HOH HOH . J 8 HOH A 45 1045 24 HOH HOH . J 8 HOH A 46 1046 44 HOH HOH . J 8 HOH A 47 1047 280 HOH HOH . J 8 HOH A 48 1048 119 HOH HOH . J 8 HOH A 49 1049 97 HOH HOH . J 8 HOH A 50 1050 72 HOH HOH . J 8 HOH A 51 1051 173 HOH HOH . J 8 HOH A 52 1052 209 HOH HOH . J 8 HOH A 53 1053 55 HOH HOH . J 8 HOH A 54 1054 141 HOH HOH . J 8 HOH A 55 1055 17 HOH HOH . J 8 HOH A 56 1056 107 HOH HOH . J 8 HOH A 57 1057 35 HOH HOH . J 8 HOH A 58 1058 83 HOH HOH . J 8 HOH A 59 1059 34 HOH HOH . J 8 HOH A 60 1060 135 HOH HOH . J 8 HOH A 61 1061 4 HOH HOH . J 8 HOH A 62 1062 63 HOH HOH . J 8 HOH A 63 1063 50 HOH HOH . J 8 HOH A 64 1064 251 HOH HOH . J 8 HOH A 65 1065 86 HOH HOH . J 8 HOH A 66 1066 40 HOH HOH . J 8 HOH A 67 1067 5 HOH HOH . J 8 HOH A 68 1068 92 HOH HOH . J 8 HOH A 69 1069 98 HOH HOH . J 8 HOH A 70 1070 31 HOH HOH . J 8 HOH A 71 1071 272 HOH HOH . J 8 HOH A 72 1072 19 HOH HOH . J 8 HOH A 73 1073 49 HOH HOH . J 8 HOH A 74 1074 100 HOH HOH . J 8 HOH A 75 1075 48 HOH HOH . J 8 HOH A 76 1076 143 HOH HOH . J 8 HOH A 77 1077 184 HOH HOH . J 8 HOH A 78 1078 27 HOH HOH . J 8 HOH A 79 1079 140 HOH HOH . J 8 HOH A 80 1080 51 HOH HOH . J 8 HOH A 81 1081 239 HOH HOH . J 8 HOH A 82 1082 57 HOH HOH . J 8 HOH A 83 1083 69 HOH HOH . J 8 HOH A 84 1084 37 HOH HOH . J 8 HOH A 85 1085 28 HOH HOH . J 8 HOH A 86 1086 16 HOH HOH . J 8 HOH A 87 1087 58 HOH HOH . J 8 HOH A 88 1088 116 HOH HOH . J 8 HOH A 89 1089 96 HOH HOH . J 8 HOH A 90 1090 264 HOH HOH . J 8 HOH A 91 1091 115 HOH HOH . J 8 HOH A 92 1092 84 HOH HOH . J 8 HOH A 93 1093 8 HOH HOH . J 8 HOH A 94 1094 41 HOH HOH . J 8 HOH A 95 1095 255 HOH HOH . J 8 HOH A 96 1096 93 HOH HOH . J 8 HOH A 97 1097 243 HOH HOH . J 8 HOH A 98 1098 278 HOH HOH . J 8 HOH A 99 1099 131 HOH HOH . J 8 HOH A 100 1100 15 HOH HOH . J 8 HOH A 101 1101 26 HOH HOH . J 8 HOH A 102 1102 47 HOH HOH . J 8 HOH A 103 1103 46 HOH HOH . J 8 HOH A 104 1104 33 HOH HOH . J 8 HOH A 105 1105 79 HOH HOH . J 8 HOH A 106 1106 77 HOH HOH . J 8 HOH A 107 1107 129 HOH HOH . J 8 HOH A 108 1108 161 HOH HOH . J 8 HOH A 109 1109 20 HOH HOH . J 8 HOH A 110 1110 159 HOH HOH . J 8 HOH A 111 1111 60 HOH HOH . J 8 HOH A 112 1112 21 HOH HOH . J 8 HOH A 113 1113 65 HOH HOH . J 8 HOH A 114 1114 271 HOH HOH . J 8 HOH A 115 1115 227 HOH HOH . J 8 HOH A 116 1116 81 HOH HOH . J 8 HOH A 117 1117 157 HOH HOH . J 8 HOH A 118 1118 36 HOH HOH . J 8 HOH A 119 1119 32 HOH HOH . J 8 HOH A 120 1120 67 HOH HOH . J 8 HOH A 121 1121 155 HOH HOH . J 8 HOH A 122 1122 248 HOH HOH . J 8 HOH A 123 1123 70 HOH HOH . J 8 HOH A 124 1124 7 HOH HOH . J 8 HOH A 125 1125 124 HOH HOH . J 8 HOH A 126 1126 261 HOH HOH . J 8 HOH A 127 1127 45 HOH HOH . J 8 HOH A 128 1128 95 HOH HOH . J 8 HOH A 129 1129 89 HOH HOH . J 8 HOH A 130 1130 85 HOH HOH . J 8 HOH A 131 1131 234 HOH HOH . J 8 HOH A 132 1132 249 HOH HOH . J 8 HOH A 133 1133 10 HOH HOH . J 8 HOH A 134 1134 176 HOH HOH . J 8 HOH A 135 1135 73 HOH HOH . J 8 HOH A 136 1136 90 HOH HOH . J 8 HOH A 137 1137 268 HOH HOH . J 8 HOH A 138 1138 74 HOH HOH . J 8 HOH A 139 1139 76 HOH HOH . J 8 HOH A 140 1140 193 HOH HOH . J 8 HOH A 141 1141 267 HOH HOH . J 8 HOH A 142 1142 238 HOH HOH . J 8 HOH A 143 1143 269 HOH HOH . J 8 HOH A 144 1144 68 HOH HOH . J 8 HOH A 145 1145 285 HOH HOH . J 8 HOH A 146 1146 224 HOH HOH . J 8 HOH A 147 1147 99 HOH HOH . J 8 HOH A 148 1148 263 HOH HOH . J 8 HOH A 149 1149 277 HOH HOH . J 8 HOH A 150 1150 64 HOH HOH . J 8 HOH A 151 1151 250 HOH HOH . J 8 HOH A 152 1152 108 HOH HOH . J 8 HOH A 153 1153 122 HOH HOH . J 8 HOH A 154 1154 226 HOH HOH . J 8 HOH A 155 1155 105 HOH HOH . J 8 HOH A 156 1156 259 HOH HOH . J 8 HOH A 157 1157 61 HOH HOH . J 8 HOH A 158 1158 221 HOH HOH . J 8 HOH A 159 1159 59 HOH HOH . J 8 HOH A 160 1160 111 HOH HOH . J 8 HOH A 161 1161 281 HOH HOH . J 8 HOH A 162 1162 103 HOH HOH . J 8 HOH A 163 1163 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BMA . . . C 3 19.724 -9.467 17.269 0.5 25.16 ? C1 BMA 902 A 1 HETATM 2 C C2 BMA . . . C 3 19.262 -8.06 17.166 1 27.19 ? C2 BMA 902 A 1 HETATM 3 C C3 BMA . . . C 3 19.224 -7.621 15.674 1 25.95 ? C3 BMA 902 A 1 HETATM 4 C C4 BMA . . . C 3 20.584 -7.764 15.056 1 22.66 ? C4 BMA 902 A 1 HETATM 5 C C5 BMA . . . C 3 21.193 -9.091 15.428 1 21.04 ? C5 BMA 902 A 1 HETATM 6 C C6 BMA . . . C 3 22.644 -9.24 15.041 1 20.6 ? C6 BMA 902 A 1 HETATM 7 O O1 BMA . . . C 3 19.856 -9.845 18.616 1 33.74 ? O1 BMA 902 A 1 HETATM 8 O O2 BMA . . . C 3 20.286 -7.278 17.817 1 29.7 ? O2 BMA 902 A 1 HETATM 9 O O3 BMA . . . C 3 18.87 -6.258 15.481 1 33.55 ? O3 BMA 902 A 1 HETATM 10 O O4 BMA . . . C 3 20.532 -7.693 13.612 1 18.09 ? O4 BMA 902 A 1 HETATM 11 O O5 BMA . . . C 3 21.054 -9.37 16.873 1 24.45 ? O5 BMA 902 A 1 HETATM 12 O O6 BMA . . . C 3 23.497 -8.327 15.668 1 18.09 ? O6 BMA 902 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #