data_7EZC # _model_server_result.job_id asMS720Vkdmvcuylt0zDxg _model_server_result.datetime_utc '2025-03-05 18:41:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ezc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1200}' # _entry.id 7EZC # _exptl.entry_id 7EZC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 777.871 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(2,2-diphenylethylamino)-9-[(2R,3R,4S,5S)-5-(ethylcarbamoyl)-3,4-dihydroxy-oxolan-2-yl]-N-[2-[(1-pyridin-2-ylpiperidin-4-yl)carbamoylamino]ethyl]purine-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.22 _cell.angle_gamma 90 _cell.entry_id 7EZC _cell.length_a 71.23 _cell.length_b 175.73 _cell.length_c 112.71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EZC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 B SG CYS 80 B CYS 71 1_555 B SG CYS 168 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 83 B CYS 74 1_555 B SG CYS 155 B CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 86 B CYS 77 1_555 B SG CYS 175 B CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 364 B CYS 259 1_555 B SG CYS 367 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C40 H47 N11 O6' _chem_comp.formula_weight 777.871 _chem_comp.id UKA _chem_comp.mon_nstd_flag . _chem_comp.name 6-(2,2-diphenylethylamino)-9-[(2R,3R,4S,5S)-5-(ethylcarbamoyl)-3,4-dihydroxy-oxolan-2-yl]-N-[2-[(1-pyridin-2-ylpiperidin-4-yl)carbamoylamino]ethyl]purine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 UKA sing 356 n n O3 C1 UKA sing 357 n n C1 C4 UKA sing 358 n n C1 H1 UKA sing 359 n n C4 N1 UKA sing 360 n n C8 N1 UKA sing 361 n y N1 C10 UKA sing 362 n y C3 O1 UKA sing 363 n n O1 C4 UKA sing 364 n n O2 C2 UKA sing 365 n n C3 C2 UKA sing 366 n n C2 H2 UKA sing 367 n n C6 N2 UKA sing 368 n n N2 C5 UKA sing 369 n n N2 HN2 UKA sing 370 n n O2 HO2 UKA sing 371 n n C5 C3 UKA sing 372 n n C3 H3 UKA sing 373 n n C8 N3 UKA doub 374 n y N3 C9 UKA sing 375 n y O3 HO3 UKA sing 376 n n C4 H4 UKA sing 377 n n C12 N4 UKA sing 378 n y C11 N4 UKA doub 379 n y C5 O4 UKA doub 380 n n C10 N5 UKA sing 381 n y N5 C12 UKA doub 382 n y O5 C27 UKA doub 383 n n C7 C6 UKA sing 384 n n C6 H6 UKA sing 385 n n C6 H6A UKA sing 386 n n C11 N6 UKA sing 387 n n N6 C13 UKA sing 388 n n N6 HN6 UKA sing 389 n n O6 C30 UKA doub 390 n n C7 H7 UKA sing 391 n n C7 H7A UKA sing 392 n n C7 H7B UKA sing 393 n n C27 N7 UKA sing 394 n n N7 C28 UKA sing 395 n n N7 HN7 UKA sing 396 n n C8 H8 UKA sing 397 n n C29 N8 UKA sing 398 n n N8 C30 UKA sing 399 n n N8 HN8 UKA sing 400 n n C10 C9 UKA doub 401 n y C9 C11 UKA sing 402 n y C30 N9 UKA sing 403 n n N9 C31 UKA sing 404 n n N9 HN9 UKA sing 405 n n C33 N10 UKA sing 406 n n N10 C40 UKA sing 407 n n N10 C34 UKA sing 408 n n C40 N11 UKA doub 409 n y N11 C39 UKA sing 410 n y C12 C27 UKA sing 411 n n C13 C14 UKA sing 412 n n C13 H13 UKA sing 413 n n C13 H13A UKA sing 414 n n C16 C14 UKA sing 415 n n C14 C15 UKA sing 416 n n C14 H14 UKA sing 417 n n C15 C17 UKA doub 418 n y C15 C21 UKA sing 419 n y C26 C16 UKA doub 420 n y C16 C22 UKA sing 421 n y C17 C18 UKA sing 422 n y C17 H17 UKA sing 423 n n C18 C19 UKA doub 424 n y C18 H18 UKA sing 425 n n C20 C19 UKA sing 426 n y C19 H19 UKA sing 427 n n C21 C20 UKA doub 428 n y C20 H20 UKA sing 429 n n C21 H21 UKA sing 430 n n C23 C22 UKA doub 431 n y C22 H22 UKA sing 432 n n C24 C23 UKA sing 433 n y C23 H23 UKA sing 434 n n C25 C24 UKA doub 435 n y C24 H24 UKA sing 436 n n C25 C26 UKA sing 437 n y C25 H25 UKA sing 438 n n C26 H26 UKA sing 439 n n C28 C29 UKA sing 440 n n C28 H28 UKA sing 441 n n C28 H28A UKA sing 442 n n C29 H29 UKA sing 443 n n C29 H29A UKA sing 444 n n C32 C31 UKA sing 445 n n C31 C35 UKA sing 446 n n C31 H31 UKA sing 447 n n C32 C33 UKA sing 448 n n C32 H32 UKA sing 449 n n C32 H32A UKA sing 450 n n C33 H33 UKA sing 451 n n C33 H33A UKA sing 452 n n C35 C34 UKA sing 453 n n C34 H34 UKA sing 454 n n C34 H34A UKA sing 455 n n C35 H35 UKA sing 456 n n C35 H35A UKA sing 457 n n C36 C37 UKA doub 458 n y C36 C40 UKA sing 459 n y C36 H36 UKA sing 460 n n C37 C38 UKA sing 461 n y C37 H37 UKA sing 462 n n C38 C39 UKA doub 463 n y C38 H38 UKA sing 464 n n C39 H39 UKA sing 465 n n # _atom_sites.entry_id 7EZC _atom_sites.fract_transf_matrix[1][1] 0.014039 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000298 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UKA A 1 1200 1200 UKA UKA . D 2 UKA B 1 1200 1200 UKA UKA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UKA . . . C 2 8.979 -49.566 34.561 1 97.77 ? C1 UKA 1200 A 1 HETATM 2 N N1 UKA . . . C 2 10.616 -51.172 34.73 1 94.75 ? N1 UKA 1200 A 1 HETATM 3 O O1 UKA . . . C 2 10.618 -49.571 32.804 1 96.25 ? O1 UKA 1200 A 1 HETATM 4 C C2 UKA . . . C 2 9.657 -48.22 34.439 1 97.09 ? C2 UKA 1200 A 1 HETATM 5 N N2 UKA . . . C 2 12.379 -46.665 32.345 1 99.54 ? N2 UKA 1200 A 1 HETATM 6 O O2 UKA . . . C 2 8.729 -47.233 34.358 1 97.61 ? O2 UKA 1200 A 1 HETATM 7 C C3 UKA . . . C 2 10.489 -48.298 33.098 1 97.03 ? C3 UKA 1200 A 1 HETATM 8 N N3 UKA . . . C 2 12.393 -51.762 35.827 1 94.75 ? N3 UKA 1200 A 1 HETATM 9 O O3 UKA . . . C 2 7.618 -49.505 33.969 1 97.87 ? O3 UKA 1200 A 1 HETATM 10 C C4 UKA . . . C 2 9.754 -50.428 33.859 1 96.33 ? C4 UKA 1200 A 1 HETATM 11 N N4 UKA . . . C 2 10.27 -54.483 37.013 1 95.11 ? N4 UKA 1200 A 1 HETATM 12 O O4 UKA . . . C 2 12.544 -47.978 34.232 1 98.78 ? O4 UKA 1200 A 1 HETATM 13 C C5 UKA . . . C 2 11.876 -47.663 33.3 1 98.24 ? C5 UKA 1200 A 1 HETATM 14 N N5 UKA . . . C 2 9.192 -53.007 35.529 1 94.75 ? N5 UKA 1200 A 1 HETATM 15 O O5 UKA . . . C 2 7.009 -54.308 35.345 1 94.75 ? O5 UKA 1200 A 1 HETATM 16 C C6 UKA . . . C 2 13.706 -46.067 32.552 1 98.93 ? C6 UKA 1200 A 1 HETATM 17 N N6 UKA . . . C 2 12.31 -54.517 37.803 1 94.75 ? N6 UKA 1200 A 1 HETATM 18 O O6 UKA . . . C 2 5.5 -59.163 39.007 1 104.67 ? O6 UKA 1200 A 1 HETATM 19 C C7 UKA . . . C 2 14.114 -45.27 31.295 1 98.2 ? C7 UKA 1200 A 1 HETATM 20 N N7 UKA . . . C 2 7.293 -55.685 37.174 1 99.43 ? N7 UKA 1200 A 1 HETATM 21 C C8 UKA . . . C 2 11.893 -50.851 34.974 1 94.75 ? C8 UKA 1200 A 1 HETATM 22 N N8 UKA . . . C 2 7.05 -58.401 37.47 1 104.31 ? N8 UKA 1200 A 1 HETATM 23 C C9 UKA . . . C 2 11.421 -52.648 36.111 1 94.75 ? C9 UKA 1200 A 1 HETATM 24 N N9 UKA . . . C 2 7.664 -59.809 39.501 1 110.31 ? N9 UKA 1200 A 1 HETATM 25 C C10 UKA . . . C 2 10.325 -52.283 35.428 1 94.75 ? C10 UKA 1200 A 1 HETATM 26 N N10 UKA . . . C 2 8.697 -61.507 43.203 1 118.21 ? N10 UKA 1200 A 1 HETATM 27 C C11 UKA . . . C 2 11.387 -53.775 36.919 1 94.92 ? C11 UKA 1200 A 1 HETATM 28 N N11 UKA . . . C 2 10.237 -62.422 43.892 1 121.24 ? N11 UKA 1200 A 1 HETATM 29 C C12 UKA . . . C 2 9.166 -54.105 36.322 1 95.16 ? C12 UKA 1200 A 1 HETATM 30 C C13 UKA . . . C 2 11.904 -55.819 38.378 1 94.96 ? C13 UKA 1200 A 1 HETATM 31 C C14 UKA . . . C 2 11.758 -55.674 39.92 1 96.21 ? C14 UKA 1200 A 1 HETATM 32 C C15 UKA . . . C 2 11.918 -57.048 40.638 1 97.4 ? C15 UKA 1200 A 1 HETATM 33 C C16 UKA . . . C 2 10.37 -55.073 40.269 1 95.47 ? C16 UKA 1200 A 1 HETATM 34 C C17 UKA . . . C 2 12.01 -57.17 42.022 1 97.48 ? C17 UKA 1200 A 1 HETATM 35 C C18 UKA . . . C 2 12.15 -58.426 42.6 1 98.35 ? C18 UKA 1200 A 1 HETATM 36 C C19 UKA . . . C 2 12.195 -59.56 41.796 1 99.6 ? C19 UKA 1200 A 1 HETATM 37 C C20 UKA . . . C 2 12.101 -59.441 40.414 1 100.36 ? C20 UKA 1200 A 1 HETATM 38 C C21 UKA . . . C 2 11.963 -58.185 39.834 1 100.17 ? C21 UKA 1200 A 1 HETATM 39 C C22 UKA . . . C 2 9.384 -56.039 40.098 1 95.19 ? C22 UKA 1200 A 1 HETATM 40 C C23 UKA . . . C 2 8.052 -55.734 40.356 1 95.35 ? C23 UKA 1200 A 1 HETATM 41 C C24 UKA . . . C 2 7.71 -54.46 40.789 1 95.79 ? C24 UKA 1200 A 1 HETATM 42 C C25 UKA . . . C 2 8.698 -53.497 40.957 1 96.08 ? C25 UKA 1200 A 1 HETATM 43 C C26 UKA . . . C 2 10.028 -53.801 40.703 1 95.92 ? C26 UKA 1200 A 1 HETATM 44 C C27 UKA . . . C 2 7.741 -54.679 36.206 1 96.88 ? C27 UKA 1200 A 1 HETATM 45 C C28 UKA . . . C 2 5.932 -56.224 37.05 1 101.43 ? C28 UKA 1200 A 1 HETATM 46 C C29 UKA . . . C 2 6.034 -57.716 36.649 1 102.89 ? C29 UKA 1200 A 1 HETATM 47 C C30 UKA . . . C 2 6.644 -59.127 38.686 1 106.12 ? C30 UKA 1200 A 1 HETATM 48 C C31 UKA . . . C 2 7.261 -60.556 40.744 1 113.66 ? C31 UKA 1200 A 1 HETATM 49 C C32 UKA . . . C 2 7.471 -59.659 41.941 1 115.52 ? C32 UKA 1200 A 1 HETATM 50 C C33 UKA . . . C 2 7.658 -60.426 43.262 1 117.15 ? C33 UKA 1200 A 1 HETATM 51 C C34 UKA . . . C 2 9.213 -61.736 41.805 1 115.77 ? C34 UKA 1200 A 1 HETATM 52 C C35 UKA . . . C 2 8.057 -61.825 40.799 1 114.31 ? C35 UKA 1200 A 1 HETATM 53 C C36 UKA . . . C 2 10.435 -60.227 44.917 1 121.88 ? C36 UKA 1200 A 1 HETATM 54 C C37 UKA . . . C 2 11.577 -60.627 45.537 1 122.63 ? C37 UKA 1200 A 1 HETATM 55 C C38 UKA . . . C 2 12.047 -61.895 45.346 1 122.62 ? C38 UKA 1200 A 1 HETATM 56 C C39 UKA . . . C 2 11.379 -62.799 44.522 1 121.81 ? C39 UKA 1200 A 1 HETATM 57 C C40 UKA . . . C 2 9.807 -61.159 44.105 1 120.28 ? C40 UKA 1200 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 57 #