data_7EZC
#
_model_server_result.job_id            nzu_8gw5bLKlsE6mTCZMtQ 
_model_server_result.datetime_utc      '2024-11-09 02:22:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ezc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1200}' 
#
_entry.id    7EZC 
#
_exptl.entry_id    7EZC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              777.871 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-(2,2-diphenylethylamino)-9-[(2R,3R,4S,5S)-5-(ethylcarbamoyl)-3,4-dihydroxy-oxolan-2-yl]-N-[2-[(1-pyridin-2-ylpiperidin-4-yl)carbamoylamino]ethyl]purine-2-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.22 
_cell.angle_gamma         90 
_cell.entry_id            7EZC 
_cell.length_a            71.23 
_cell.length_b            175.73 
_cell.length_c            112.71 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7EZC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 B SG CYS 80 B CYS 71 1_555 B SG CYS 168 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 B SG CYS 83 B CYS 74 1_555 B SG CYS 155 B CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf7 B SG CYS 86 B CYS 77 1_555 B SG CYS 175 B CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 B SG CYS 364 B CYS 259 1_555 B SG CYS 367 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C40 H47 N11 O6' 
_chem_comp.formula_weight    777.871 
_chem_comp.id                UKA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-(2,2-diphenylethylamino)-9-[(2R,3R,4S,5S)-5-(ethylcarbamoyl)-3,4-dihydroxy-oxolan-2-yl]-N-[2-[(1-pyridin-2-ylpiperidin-4-yl)carbamoylamino]ethyl]purine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 UKA sing 356 n n 
O3 C1 UKA sing 357 n n 
C1 C4 UKA sing 358 n n 
C1 H1 UKA sing 359 n n 
C4 N1 UKA sing 360 n n 
C8 N1 UKA sing 361 n y 
N1 C10 UKA sing 362 n y 
C3 O1 UKA sing 363 n n 
O1 C4 UKA sing 364 n n 
O2 C2 UKA sing 365 n n 
C3 C2 UKA sing 366 n n 
C2 H2 UKA sing 367 n n 
C6 N2 UKA sing 368 n n 
N2 C5 UKA sing 369 n n 
N2 HN2 UKA sing 370 n n 
O2 HO2 UKA sing 371 n n 
C5 C3 UKA sing 372 n n 
C3 H3 UKA sing 373 n n 
C8 N3 UKA doub 374 n y 
N3 C9 UKA sing 375 n y 
O3 HO3 UKA sing 376 n n 
C4 H4 UKA sing 377 n n 
C12 N4 UKA sing 378 n y 
C11 N4 UKA doub 379 n y 
C5 O4 UKA doub 380 n n 
C10 N5 UKA sing 381 n y 
N5 C12 UKA doub 382 n y 
O5 C27 UKA doub 383 n n 
C7 C6 UKA sing 384 n n 
C6 H6 UKA sing 385 n n 
C6 H6A UKA sing 386 n n 
C11 N6 UKA sing 387 n n 
N6 C13 UKA sing 388 n n 
N6 HN6 UKA sing 389 n n 
O6 C30 UKA doub 390 n n 
C7 H7 UKA sing 391 n n 
C7 H7A UKA sing 392 n n 
C7 H7B UKA sing 393 n n 
C27 N7 UKA sing 394 n n 
N7 C28 UKA sing 395 n n 
N7 HN7 UKA sing 396 n n 
C8 H8 UKA sing 397 n n 
C29 N8 UKA sing 398 n n 
N8 C30 UKA sing 399 n n 
N8 HN8 UKA sing 400 n n 
C10 C9 UKA doub 401 n y 
C9 C11 UKA sing 402 n y 
C30 N9 UKA sing 403 n n 
N9 C31 UKA sing 404 n n 
N9 HN9 UKA sing 405 n n 
C33 N10 UKA sing 406 n n 
N10 C40 UKA sing 407 n n 
N10 C34 UKA sing 408 n n 
C40 N11 UKA doub 409 n y 
N11 C39 UKA sing 410 n y 
C12 C27 UKA sing 411 n n 
C13 C14 UKA sing 412 n n 
C13 H13 UKA sing 413 n n 
C13 H13A UKA sing 414 n n 
C16 C14 UKA sing 415 n n 
C14 C15 UKA sing 416 n n 
C14 H14 UKA sing 417 n n 
C15 C17 UKA doub 418 n y 
C15 C21 UKA sing 419 n y 
C26 C16 UKA doub 420 n y 
C16 C22 UKA sing 421 n y 
C17 C18 UKA sing 422 n y 
C17 H17 UKA sing 423 n n 
C18 C19 UKA doub 424 n y 
C18 H18 UKA sing 425 n n 
C20 C19 UKA sing 426 n y 
C19 H19 UKA sing 427 n n 
C21 C20 UKA doub 428 n y 
C20 H20 UKA sing 429 n n 
C21 H21 UKA sing 430 n n 
C23 C22 UKA doub 431 n y 
C22 H22 UKA sing 432 n n 
C24 C23 UKA sing 433 n y 
C23 H23 UKA sing 434 n n 
C25 C24 UKA doub 435 n y 
C24 H24 UKA sing 436 n n 
C25 C26 UKA sing 437 n y 
C25 H25 UKA sing 438 n n 
C26 H26 UKA sing 439 n n 
C28 C29 UKA sing 440 n n 
C28 H28 UKA sing 441 n n 
C28 H28A UKA sing 442 n n 
C29 H29 UKA sing 443 n n 
C29 H29A UKA sing 444 n n 
C32 C31 UKA sing 445 n n 
C31 C35 UKA sing 446 n n 
C31 H31 UKA sing 447 n n 
C32 C33 UKA sing 448 n n 
C32 H32 UKA sing 449 n n 
C32 H32A UKA sing 450 n n 
C33 H33 UKA sing 451 n n 
C33 H33A UKA sing 452 n n 
C35 C34 UKA sing 453 n n 
C34 H34 UKA sing 454 n n 
C34 H34A UKA sing 455 n n 
C35 H35 UKA sing 456 n n 
C35 H35A UKA sing 457 n n 
C36 C37 UKA doub 458 n y 
C36 C40 UKA sing 459 n y 
C36 H36 UKA sing 460 n n 
C37 C38 UKA sing 461 n y 
C37 H37 UKA sing 462 n n 
C38 C39 UKA doub 463 n y 
C38 H38 UKA sing 464 n n 
C39 H39 UKA sing 465 n n 
#
_atom_sites.entry_id                     7EZC 
_atom_sites.fract_transf_matrix[1][1]    0.014039 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000298 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005691 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008874 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UKA A 1 1200 1200 UKA UKA . 
D 2 UKA B 1 1200 1200 UKA UKA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 UKA . . . D 2 41.267 -37.797 17.531 1 118.47 ? C1 UKA 1200 B 1 
HETATM 2 N N1 UKA . . . D 2 40.282 -35.847 18.297 1 115.35 ? N1 UKA 1200 B 1 
HETATM 3 O O1 UKA . . . D 2 38.866 -37.788 17.605 1 116.95 ? O1 UKA 1200 B 1 
HETATM 4 C C2 UKA . . . D 2 40.728 -39.007 18.264 1 117.79 ? C2 UKA 1200 B 1 
HETATM 5 N N2 UKA . . . D 2 37.754 -40.607 19.529 1 120.24 ? N2 UKA 1200 B 1 
HETATM 6 O O2 UKA . . . D 2 41.266 -40.141 17.756 1 118.31 ? O2 UKA 1200 B 1 
HETATM 7 C C3 UKA . . . D 2 39.17 -38.997 18.018 1 117.73 ? C3 UKA 1200 B 1 
HETATM 8 N N3 UKA . . . D 2 39.938 -34.707 20.115 1 113.76 ? N3 UKA 1200 B 1 
HETATM 9 O O3 UKA . . . D 2 41.781 -38.204 16.199 1 118.57 ? O3 UKA 1200 B 1 
HETATM 10 C C4 UKA . . . D 2 40.223 -36.948 17.376 1 117.03 ? C4 UKA 1200 B 1 
HETATM 11 N N4 UKA . . . D 2 41.816 -32.1 18.39 1 115.81 ? N4 UKA 1200 B 1 
HETATM 12 O O4 UKA . . . D 2 38.409 -38.507 20.206 1 119.48 ? O4 UKA 1200 B 1 
HETATM 13 C C5 UKA . . . D 2 38.432 -39.314 19.333 1 118.94 ? C5 UKA 1200 B 1 
HETATM 14 N N5 UKA . . . D 2 41.554 -34.073 17.128 1 115.11 ? N5 UKA 1200 B 1 
HETATM 15 O O5 UKA . . . D 2 42.55 -33.082 14.942 1 115.23 ? O5 UKA 1200 B 1 
HETATM 16 C C6 UKA . . . D 2 37.059 -40.87 20.799 1 119.63 ? C6 UKA 1200 B 1 
HETATM 17 N N6 UKA . . . D 2 41.131 -31.563 20.406 1 115.36 ? N6 UKA 1200 B 1 
HETATM 18 O O6 UKA . . . D 2 45.918 -27.445 14.665 1 125.37 ? O6 UKA 1200 B 1 
HETATM 19 C C7 UKA . . . D 2 37.046 -42.382 21.12 1 118.9 ? C7 UKA 1200 B 1 
HETATM 20 N N7 UKA . . . D 2 43.762 -31.376 15.924 1 120.13 ? N7 UKA 1200 B 1 
HETATM 21 C C8 UKA . . . D 2 39.715 -35.883 19.51 1 113.8 ? C8 UKA 1200 B 1 
HETATM 22 N N8 UKA . . . D 2 44.114 -28.682 15.405 1 125.01 ? N8 UKA 1200 B 1 
HETATM 23 C C9 UKA . . . D 2 40.646 -33.934 19.272 1 115.3 ? C9 UKA 1200 B 1 
HETATM 24 N N9 UKA . . . D 2 45.069 -26.679 16.67 1 131.01 ? N9 UKA 1200 B 1 
HETATM 25 C C10 UKA . . . D 2 40.858 -34.634 18.145 1 114.55 ? C10 UKA 1200 B 1 
HETATM 26 N N10 UKA . . . D 2 46.587 -23.772 19.155 1 138.91 ? N10 UKA 1200 B 1 
HETATM 27 C C11 UKA . . . D 2 41.136 -32.643 19.392 1 115.62 ? C11 UKA 1200 B 1 
HETATM 28 N N11 UKA . . . D 2 45.665 -22.837 20.576 1 141.94 ? N11 UKA 1200 B 1 
HETATM 29 C C12 UKA . . . D 2 42.034 -32.806 17.251 1 115.86 ? C12 UKA 1200 B 1 
HETATM 30 C C13 UKA . . . D 2 41.664 -30.22 20.087 1 115.66 ? C13 UKA 1200 B 1 
HETATM 31 C C14 UKA . . . D 2 42.932 -29.948 20.95 1 116.91 ? C14 UKA 1200 B 1 
HETATM 32 C C15 UKA . . . D 2 43.159 -28.419 21.164 1 118.1 ? C15 UKA 1200 B 1 
HETATM 33 C C16 UKA . . . D 2 44.171 -30.58 20.258 1 116.17 ? C16 UKA 1200 B 1 
HETATM 34 C C17 UKA . . . D 2 44.14 -27.906 22.008 1 118.18 ? C17 UKA 1200 B 1 
HETATM 35 C C18 UKA . . . D 2 44.286 -26.531 22.149 1 119.05 ? C18 UKA 1200 B 1 
HETATM 36 C C19 UKA . . . D 2 43.454 -25.666 21.446 1 120.3 ? C19 UKA 1200 B 1 
HETATM 37 C C20 UKA . . . D 2 42.474 -26.176 20.601 1 121.06 ? C20 UKA 1200 B 1 
HETATM 38 C C21 UKA . . . D 2 42.327 -27.552 20.461 1 120.87 ? C21 UKA 1200 B 1 
HETATM 39 C C22 UKA . . . D 2 44.554 -29.794 19.175 1 115.89 ? C22 UKA 1200 B 1 
HETATM 40 C C23 UKA . . . D 2 45.647 -30.162 18.398 1 116.05 ? C23 UKA 1200 B 1 
HETATM 41 C C24 UKA . . . D 2 46.356 -31.319 18.703 1 116.49 ? C24 UKA 1200 B 1 
HETATM 42 C C25 UKA . . . D 2 45.971 -32.105 19.784 1 116.78 ? C25 UKA 1200 B 1 
HETATM 43 C C26 UKA . . . D 2 44.881 -31.735 20.563 1 116.62 ? C26 UKA 1200 B 1 
HETATM 44 C C27 UKA . . . D 2 42.773 -32.466 15.934 1 117.58 ? C27 UKA 1200 B 1 
HETATM 45 C C28 UKA . . . D 2 44.482 -31.041 14.681 1 122.13 ? C28 UKA 1200 B 1 
HETATM 46 C C29 UKA . . . D 2 44.15 -29.589 14.241 1 123.59 ? C29 UKA 1200 B 1 
HETATM 47 C C30 UKA . . . D 2 45.098 -27.59 15.513 1 126.82 ? C30 UKA 1200 B 1 
HETATM 48 C C31 UKA . . . D 2 46.076 -25.563 16.774 1 134.36 ? C31 UKA 1200 B 1 
HETATM 49 C C32 UKA . . . D 2 47.088 -25.915 17.839 1 136.22 ? C32 UKA 1200 B 1 
HETATM 50 C C33 UKA . . . D 2 47.636 -24.714 18.634 1 137.85 ? C33 UKA 1200 B 1 
HETATM 51 C C34 UKA . . . D 2 45.227 -24.04 18.565 1 136.47 ? C34 UKA 1200 B 1 
HETATM 52 C C35 UKA . . . D 2 45.33 -24.295 17.056 1 135.01 ? C35 UKA 1200 B 1 
HETATM 53 C C36 UKA . . . D 2 47.018 -24.448 21.79 1 142.58 ? C36 UKA 1200 B 1 
HETATM 54 C C37 UKA . . . D 2 46.517 -23.973 22.96 1 143.33 ? C37 UKA 1200 B 1 
HETATM 55 C C38 UKA . . . D 2 45.61 -22.953 22.951 1 143.32 ? C38 UKA 1200 B 1 
HETATM 56 C C39 UKA . . . D 2 45.178 -22.38 21.757 1 142.51 ? C39 UKA 1200 B 1 
HETATM 57 C C40 UKA . . . D 2 46.558 -23.851 20.627 1 140.98 ? C40 UKA 1200 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           57 
#