data_7EZR # _model_server_result.job_id xUYUgTGp9-oNCWt5A4-x9Q _model_server_result.datetime_utc '2024-10-18 15:24:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ezr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 7EZR # _exptl.entry_id 7EZR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,6-di-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.657 _cell.angle_gamma 90 _cell.entry_id 7EZR _cell.length_a 66.902 _cell.length_b 142.591 _cell.length_c 73.575 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EZR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id FBP _chem_comp.mon_nstd_flag n _chem_comp.name 1,6-di-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms BETA-FRUCTOSE-1,6-DIPHOSPHATE;FRUCTOSE-1,6-BISPHOSPHATE;1,6-di-O-phosphono-beta-D-fructose;1,6-di-O-phosphono-D-fructose;1,6-di-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P FBP doub 132 n n P1 O2P FBP sing 133 n n P1 O3P FBP sing 134 n n P1 O1 FBP sing 135 n n O2P HOP2 FBP sing 136 n n O3P HOP3 FBP sing 137 n n O1 C1 FBP sing 138 n n C1 C2 FBP sing 139 n n C1 H11 FBP sing 140 n n C1 H12 FBP sing 141 n n C2 O2 FBP sing 142 n n C2 C3 FBP sing 143 n n C2 O5 FBP sing 144 n n O2 HO2 FBP sing 145 n n C3 O3 FBP sing 146 n n C3 C4 FBP sing 147 n n C3 H3 FBP sing 148 n n O3 HO3 FBP sing 149 n n C4 O4 FBP sing 150 n n C4 C5 FBP sing 151 n n C4 H4 FBP sing 152 n n O4 HO4 FBP sing 153 n n C5 O5 FBP sing 154 n n C5 C6 FBP sing 155 n n C5 H5 FBP sing 156 n n C6 O6 FBP sing 157 n n C6 H61 FBP sing 158 n n C6 H62 FBP sing 159 n n O6 P2 FBP sing 160 n n P2 O4P FBP doub 161 n n P2 O5P FBP sing 162 n n P2 O6P FBP sing 163 n n O5P HOP5 FBP sing 164 n n O6P HOP6 FBP sing 165 n n # _pdbx_chem_comp_identifier.comp_id FBP _pdbx_chem_comp_identifier.identifier b-D-Fruf1PO36PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 7EZR _atom_sites.fract_transf_matrix[1][1] 0.014947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005047 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 0H1 A 1 401 6 0H1 LIG . F 3 FBP A 1 402 401 FBP FBP . G 2 0H1 B 1 401 6 0H1 LIG . H 3 FBP B 1 402 401 FBP FBP . I 2 0H1 C 1 401 6 0H1 LIG . J 3 FBP C 1 402 401 FBP FBP . K 2 0H1 D 1 401 6 0H1 LIG . L 3 FBP D 1 402 401 FBP FBP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 FBP . . . F 3 4.879 25.923 15.133 1 60.85 ? P1 FBP 402 A 1 HETATM 2 O O1P FBP . . . F 3 6.305 25.546 14.787 1 59.55 ? O1P FBP 402 A 1 HETATM 3 O O2P FBP . . . F 3 4.754 27.431 15.211 1 63.26 ? O2P FBP 402 A 1 HETATM 4 O O3P FBP . . . F 3 4.505 25.317 16.471 1 60.77 ? O3P FBP 402 A 1 HETATM 5 O O1 FBP . . . F 3 3.884 25.327 13.954 1 59.21 ? O1 FBP 402 A 1 HETATM 6 C C1 FBP . . . F 3 3.1 26.207 13.187 1 58.3 ? C1 FBP 402 A 1 HETATM 7 C C2 FBP . . . F 3 1.665 25.829 13.439 1 57.93 ? C2 FBP 402 A 1 HETATM 8 O O2 FBP . . . F 3 1.563 25.169 14.637 1 57.26 ? O2 FBP 402 A 1 HETATM 9 C C3 FBP . . . F 3 1.068 24.869 12.215 1 56.5 ? C3 FBP 402 A 1 HETATM 10 O O3 FBP . . . F 3 1.537 23.488 12.363 1 55.26 ? O3 FBP 402 A 1 HETATM 11 C C4 FBP . . . F 3 -0.17 24.958 12.382 1 56.6 ? C4 FBP 402 A 1 HETATM 12 O O4 FBP . . . F 3 -0.922 24.532 11.153 1 55.56 ? O4 FBP 402 A 1 HETATM 13 C C5 FBP . . . F 3 -0.33 26.514 12.644 1 59.27 ? C5 FBP 402 A 1 HETATM 14 O O5 FBP . . . F 3 0.924 26.885 13.448 1 59.25 ? O5 FBP 402 A 1 HETATM 15 C C6 FBP . . . F 3 -1.451 26.807 13.384 1 59.78 ? C6 FBP 402 A 1 HETATM 16 O O6 FBP . . . F 3 -1.378 28.186 13.727 1 61.83 ? O6 FBP 402 A 1 HETATM 17 P P2 FBP . . . F 3 -2.651 28.899 14.495 1 64.78 ? P2 FBP 402 A 1 HETATM 18 O O4P FBP . . . F 3 -3.944 28.337 13.953 1 62.28 ? O4P FBP 402 A 1 HETATM 19 O O5P FBP . . . F 3 -2.612 30.393 14.251 1 65.77 ? O5P FBP 402 A 1 HETATM 20 O O6P FBP . . . F 3 -2.559 28.63 15.974 1 59.97 ? O6P FBP 402 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #