data_7F03 # _model_server_result.job_id ZH3gKGYG_L_rTWdiEXVnjA _model_server_result.datetime_utc '2024-11-21 13:41:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 7F03 # _exptl.entry_id 7F03 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F03 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 43 A THR 41 1_555 G MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc2 G MG MG . A MG 301 1_555 H O2B ANP . A ANP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc3 G MG MG . A MG 301 1_555 H O3G ANP . A ANP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc4 G MG MG . A MG 301 1_555 L O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc5 G MG MG . A MG 301 1_555 L O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc6 E OG1 THR 43 E THR 41 1_555 J MG MG . E MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc7 J MG MG . E MG 301 1_555 K O2B ANP . E ANP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc8 J MG MG . E MG 301 1_555 K O3G ANP . E ANP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc9 J MG MG . E MG 301 1_555 M O HOH . E HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc10 J MG MG . E MG 301 1_555 M O HOH . E HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 145 n n PG O2G ANP sing 146 n n PG O3G ANP sing 147 n n PG N3B ANP sing 148 n n O2G HOG2 ANP sing 149 n n O3G HOG3 ANP sing 150 n n PB O1B ANP doub 151 n n PB O2B ANP sing 152 n n PB N3B ANP sing 153 n n PB O3A ANP sing 154 n n O2B HOB2 ANP sing 155 n n N3B HNB1 ANP sing 156 n n PA O1A ANP doub 157 n n PA O2A ANP sing 158 n n PA O3A ANP sing 159 n n PA O5' ANP sing 160 n n O2A HOA2 ANP sing 161 n n O5' C5' ANP sing 162 n n C5' C4' ANP sing 163 n n C5' "H5'1" ANP sing 164 n n C5' "H5'2" ANP sing 165 n n C4' O4' ANP sing 166 n n C4' C3' ANP sing 167 n n C4' H4' ANP sing 168 n n O4' C1' ANP sing 169 n n C3' O3' ANP sing 170 n n C3' C2' ANP sing 171 n n C3' H3' ANP sing 172 n n O3' HO3' ANP sing 173 n n C2' O2' ANP sing 174 n n C2' C1' ANP sing 175 n n C2' H2' ANP sing 176 n n O2' HO2' ANP sing 177 n n C1' N9 ANP sing 178 n n C1' H1' ANP sing 179 n n N9 C8 ANP sing 180 n y N9 C4 ANP sing 181 n y C8 N7 ANP doub 182 n y C8 H8 ANP sing 183 n n N7 C5 ANP sing 184 n y C5 C6 ANP sing 185 n y C5 C4 ANP doub 186 n y C6 N6 ANP sing 187 n n C6 N1 ANP doub 188 n y N6 HN61 ANP sing 189 n n N6 HN62 ANP sing 190 n n N1 C2 ANP sing 191 n y C2 N3 ANP doub 192 n y C2 H2 ANP sing 193 n n N3 C4 ANP sing 194 n y # _atom_sites.entry_id 7F03 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 MG A 1 301 302 MG MG . H 6 ANP A 1 302 303 ANP ANP . I 7 3PE D 1 101 302 3PE PEH . J 5 MG E 1 301 302 MG MG . K 6 ANP E 1 302 303 ANP ANP . L 8 HOH A 1 401 304 HOH HOH . L 8 HOH A 2 402 305 HOH HOH . M 8 HOH E 1 401 305 HOH HOH . M 8 HOH E 2 402 304 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . H 6 112.87 141.862 164.657 1 62.02 ? PG ANP 302 A 1 HETATM 2 O O1G ANP . . . H 6 113.571 142.748 163.665 1 62.02 ? O1G ANP 302 A 1 HETATM 3 O O2G ANP . . . H 6 111.946 142.696 165.505 1 62.02 ? O2G ANP 302 A 1 HETATM 4 O O3G ANP . . . H 6 112.04 140.868 163.894 1 62.02 ? O3G ANP 302 A 1 HETATM 5 P PB ANP . . . H 6 113.553 140.138 166.858 1 62.02 ? PB ANP 302 A 1 HETATM 6 O O1B ANP . . . H 6 112.898 140.968 167.926 1 62.02 ? O1B ANP 302 A 1 HETATM 7 O O2B ANP . . . H 6 112.868 138.881 166.4 1 62.02 ? O2B ANP 302 A 1 HETATM 8 N N3B ANP . . . H 6 113.951 141.078 165.59 1 62.02 ? N3B ANP 302 A 1 HETATM 9 P PA ANP . . . H 6 116.032 138.568 167.01 1 62.02 ? PA ANP 302 A 1 HETATM 10 O O1A ANP . . . H 6 115.497 137.227 167.387 1 62.02 ? O1A ANP 302 A 1 HETATM 11 O O2A ANP . . . H 6 116.396 138.802 165.582 1 62.02 ? O2A ANP 302 A 1 HETATM 12 O O3A ANP . . . H 6 114.97 139.685 167.455 1 62.02 ? O3A ANP 302 A 1 HETATM 13 O O5' ANP . . . H 6 117.283 138.929 167.945 1 62.02 ? O5' ANP 302 A 1 HETATM 14 C C5' ANP . . . H 6 117.083 138.986 169.378 1 62.02 ? C5' ANP 302 A 1 HETATM 15 C C4' ANP . . . H 6 118.378 139.366 170.052 1 62.02 ? C4' ANP 302 A 1 HETATM 16 O O4' ANP . . . H 6 119.393 138.384 169.721 1 62.02 ? O4' ANP 302 A 1 HETATM 17 C C3' ANP . . . H 6 118.983 140.729 169.672 1 62.02 ? C3' ANP 302 A 1 HETATM 18 O O3' ANP . . . H 6 119.315 141.446 170.853 1 62.02 ? O3' ANP 302 A 1 HETATM 19 C C2' ANP . . . H 6 120.262 140.343 168.921 1 62.02 ? C2' ANP 302 A 1 HETATM 20 O O2' ANP . . . H 6 121.275 141.324 168.959 1 62.02 ? O2' ANP 302 A 1 HETATM 21 C C1' ANP . . . H 6 120.625 139.054 169.644 1 62.02 ? C1' ANP 302 A 1 HETATM 22 N N9 ANP . . . H 6 121.565 138.205 168.923 1 62.02 ? N9 ANP 302 A 1 HETATM 23 C C8 ANP . . . H 6 122.832 137.846 169.31 1 62.02 ? C8 ANP 302 A 1 HETATM 24 N N7 ANP . . . H 6 123.426 137.068 168.435 1 62.02 ? N7 ANP 302 A 1 HETATM 25 C C5 ANP . . . H 6 122.498 136.916 167.412 1 62.02 ? C5 ANP 302 A 1 HETATM 26 C C6 ANP . . . H 6 122.529 136.21 166.195 1 62.02 ? C6 ANP 302 A 1 HETATM 27 N N6 ANP . . . H 6 123.571 135.494 165.781 1 62.02 ? N6 ANP 302 A 1 HETATM 28 N N1 ANP . . . H 6 121.428 136.276 165.41 1 62.02 ? N1 ANP 302 A 1 HETATM 29 C C2 ANP . . . H 6 120.382 136.999 165.832 1 62.02 ? C2 ANP 302 A 1 HETATM 30 N N3 ANP . . . H 6 120.24 137.7 166.953 1 62.02 ? N3 ANP 302 A 1 HETATM 31 C C4 ANP . . . H 6 121.348 137.616 167.706 1 62.02 ? C4 ANP 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #