data_7F04 # _model_server_result.job_id h_3fT9FsqQQVMgucQdkwLg _model_server_result.datetime_utc '2024-11-19 13:33:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":101}' # _entry.id 7F04 # _exptl.entry_id 7F04 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 748.065 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-Distearoyl-sn-glycerophosphoethanolamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F04 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 43 A THR 41 1_555 G MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc2 G MG MG . A MG 300 1_555 H O3G ATP . A ATP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.706 ? metalc ? metalc3 G MG MG . A MG 300 1_555 H O2B ATP . A ATP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? metalc ? metalc4 G MG MG . A MG 300 1_555 M O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc5 G MG MG . A MG 300 1_555 M O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc6 C NE2 HIS 60 C HIS 60 1_555 I FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc7 E OG1 THR 43 E THR 41 1_555 K MG MG . E MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc8 K MG MG . E MG 300 1_555 L O3G ATP . E ATP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc9 K MG MG . E MG 300 1_555 L O2B ATP . E ATP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? metalc ? metalc10 K MG MG . E MG 300 1_555 N O HOH . E HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc11 K MG MG . E MG 300 1_555 N O HOH . E HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? # _chem_comp.formula 'C41 H82 N O8 P' _chem_comp.formula_weight 748.065 _chem_comp.id 3PE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-Distearoyl-sn-glycerophosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE;1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O11 3PE sing 1 n n P O12 3PE sing 2 n n P O13 3PE sing 3 n n P O14 3PE doub 4 n n N C12 3PE sing 5 n n N HN1 3PE sing 6 n n N HN2 3PE sing 7 n n O11 C1 3PE sing 8 n n O13 C11 3PE sing 9 n n C11 C12 3PE sing 10 n n C11 H111 3PE sing 11 n n C11 H112 3PE sing 12 n n C12 H121 3PE sing 13 n n C12 H122 3PE sing 14 n n C1 C2 3PE sing 15 n n C1 H11 3PE sing 16 n n C1 H12 3PE sing 17 n n C2 C3 3PE sing 18 n n C2 O21 3PE sing 19 n n C2 H2 3PE sing 20 n n C3 O31 3PE sing 21 n n C3 H31 3PE sing 22 n n C3 H32 3PE sing 23 n n O31 C31 3PE sing 24 n n O32 C31 3PE doub 25 n n C31 C32 3PE sing 26 n n C32 C33 3PE sing 27 n n C32 H321 3PE sing 28 n n C32 H322 3PE sing 29 n n C33 C34 3PE sing 30 n n C33 H331 3PE sing 31 n n C33 H332 3PE sing 32 n n C34 C35 3PE sing 33 n n C34 H341 3PE sing 34 n n C34 H342 3PE sing 35 n n C35 C36 3PE sing 36 n n C35 H351 3PE sing 37 n n C35 H352 3PE sing 38 n n C36 C37 3PE sing 39 n n C36 H361 3PE sing 40 n n C36 H362 3PE sing 41 n n C37 C38 3PE sing 42 n n C37 H371 3PE sing 43 n n C37 H372 3PE sing 44 n n C38 C39 3PE sing 45 n n C38 H381 3PE sing 46 n n C38 H382 3PE sing 47 n n C39 C3A 3PE sing 48 n n C39 H391 3PE sing 49 n n C39 H392 3PE sing 50 n n C3A C3B 3PE sing 51 n n C3A H3A1 3PE sing 52 n n C3A H3A2 3PE sing 53 n n C3B C3C 3PE sing 54 n n C3B H3B1 3PE sing 55 n n C3B H3B2 3PE sing 56 n n C3C C3D 3PE sing 57 n n C3C H3C1 3PE sing 58 n n C3C H3C2 3PE sing 59 n n C3D C3E 3PE sing 60 n n C3D H3D1 3PE sing 61 n n C3D H3D2 3PE sing 62 n n C3E C3F 3PE sing 63 n n C3E H3E1 3PE sing 64 n n C3E H3E2 3PE sing 65 n n C3F C3G 3PE sing 66 n n C3F H3F1 3PE sing 67 n n C3F H3F2 3PE sing 68 n n C3G C3H 3PE sing 69 n n C3G H3G1 3PE sing 70 n n C3G H3G2 3PE sing 71 n n C3H C3I 3PE sing 72 n n C3H H3H1 3PE sing 73 n n C3H H3H2 3PE sing 74 n n C3I H3I1 3PE sing 75 n n C3I H3I2 3PE sing 76 n n C3I H3I3 3PE sing 77 n n O21 C21 3PE sing 78 n n O22 C21 3PE doub 79 n n C21 C22 3PE sing 80 n n C22 C23 3PE sing 81 n n C22 H221 3PE sing 82 n n C22 H222 3PE sing 83 n n C23 C24 3PE sing 84 n n C23 H231 3PE sing 85 n n C23 H232 3PE sing 86 n n C24 C25 3PE sing 87 n n C24 H241 3PE sing 88 n n C24 H242 3PE sing 89 n n C25 C26 3PE sing 90 n n C25 H251 3PE sing 91 n n C25 H252 3PE sing 92 n n C26 C27 3PE sing 93 n n C26 H261 3PE sing 94 n n C26 H262 3PE sing 95 n n C27 C28 3PE sing 96 n n C27 H271 3PE sing 97 n n C27 H272 3PE sing 98 n n C28 C29 3PE sing 99 n n C28 H281 3PE sing 100 n n C28 H282 3PE sing 101 n n C29 C2A 3PE sing 102 n n C29 H291 3PE sing 103 n n C29 H292 3PE sing 104 n n C2A C2B 3PE sing 105 n n C2A H2A1 3PE sing 106 n n C2A H2A2 3PE sing 107 n n C2B C2C 3PE sing 108 n n C2B H2B1 3PE sing 109 n n C2B H2B2 3PE sing 110 n n C2C C2D 3PE sing 111 n n C2C H2C1 3PE sing 112 n n C2C H2C2 3PE sing 113 n n C2D C2E 3PE sing 114 n n C2D H2D1 3PE sing 115 n n C2D H2D2 3PE sing 116 n n C2E C2F 3PE sing 117 n n C2E H2E1 3PE sing 118 n n C2E H2E2 3PE sing 119 n n C2F C2G 3PE sing 120 n n C2F H2F1 3PE sing 121 n n C2F H2F2 3PE sing 122 n n C2G C2H 3PE sing 123 n n C2G H2G1 3PE sing 124 n n C2G H2G2 3PE sing 125 n n C2H C2I 3PE sing 126 n n C2H H2H1 3PE sing 127 n n C2H H2H2 3PE sing 128 n n C2I H2I1 3PE sing 129 n n C2I H2I2 3PE sing 130 n n C2I H2I3 3PE sing 131 n n O12 H1 3PE sing 132 n n # _atom_sites.entry_id 7F04 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 MG A 1 300 300 MG MG . H 6 ATP A 1 301 301 ATP ATP . I 7 HEM C 1 301 301 HEM HEM . J 8 3PE D 1 101 302 3PE PEH . K 5 MG E 1 300 300 MG MG . L 6 ATP E 1 301 301 ATP ATP . M 9 HOH A 1 401 303 HOH HOH . M 9 HOH A 2 402 302 HOH HOH . N 9 HOH E 1 401 302 HOH HOH . N 9 HOH E 2 402 303 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3PE . . . J 8 121.694 132.194 120.635 1 38.02 ? P 3PE 101 D 1 HETATM 2 N N 3PE . . . J 8 120.643 129.83 124.166 1 38.02 ? N 3PE 101 D 1 HETATM 3 O O11 3PE . . . J 8 122.882 131.318 120.04 1 38.02 ? O11 3PE 101 D 1 HETATM 4 O O12 3PE . . . J 8 120.848 132.474 119.45 1 38.02 ? O12 3PE 101 D 1 HETATM 5 O O13 3PE . . . J 8 120.996 131.105 121.58 1 38.02 ? O13 3PE 101 D 1 HETATM 6 O O14 3PE . . . J 8 122.161 133.328 121.489 1 38.02 ? O14 3PE 101 D 1 HETATM 7 C C11 3PE . . . J 8 119.807 131.46 122.397 1 38.02 ? C11 3PE 101 D 1 HETATM 8 C C12 3PE . . . J 8 119.569 130.756 123.744 1 38.02 ? C12 3PE 101 D 1 HETATM 9 C C1 3PE . . . J 8 123.678 130.504 120.909 1 38.02 ? C1 3PE 101 D 1 HETATM 10 C C2 3PE . . . J 8 124.772 129.855 120.103 1 38.02 ? C2 3PE 101 D 1 HETATM 11 C C3 3PE . . . J 8 124.574 129.93 118.613 1 38.02 ? C3 3PE 101 D 1 HETATM 12 O O31 3PE . . . J 8 124.259 128.615 118.12 1 38.02 ? O31 3PE 101 D 1 HETATM 13 O O32 3PE . . . J 8 124.472 128.361 115.958 1 38.02 ? O32 3PE 101 D 1 HETATM 14 C C31 3PE . . . J 8 124.912 128.229 117.046 1 38.02 ? C31 3PE 101 D 1 HETATM 15 C C32 3PE . . . J 8 126.22 127.619 117.371 1 38.02 ? C32 3PE 101 D 1 HETATM 16 C C33 3PE . . . J 8 126.824 126.877 116.242 1 38.02 ? C33 3PE 101 D 1 HETATM 17 C C34 3PE . . . J 8 127.915 125.935 116.684 1 38.02 ? C34 3PE 101 D 1 HETATM 18 C C35 3PE . . . J 8 128.351 124.982 115.622 1 38.02 ? C35 3PE 101 D 1 HETATM 19 C C36 3PE . . . J 8 129.48 124.087 116.029 1 38.02 ? C36 3PE 101 D 1 HETATM 20 C C37 3PE . . . J 8 129.924 123.143 114.956 1 38.02 ? C37 3PE 101 D 1 HETATM 21 C C38 3PE . . . J 8 129.06 121.939 114.816 1 38.02 ? C38 3PE 101 D 1 HETATM 22 C C39 3PE . . . J 8 129.803 120.642 114.817 1 38.02 ? C39 3PE 101 D 1 HETATM 23 C C3A 3PE . . . J 8 131.097 120.64 114.064 1 38.02 ? C3A 3PE 101 D 1 HETATM 24 O O21 3PE . . . J 8 125.996 130.537 120.432 1 38.02 ? O21 3PE 101 D 1 HETATM 25 O O22 3PE . . . J 8 127.108 129.192 121.782 1 38.02 ? O22 3PE 101 D 1 HETATM 26 C C21 3PE . . . J 8 127.045 129.792 120.759 1 38.02 ? C21 3PE 101 D 1 HETATM 27 C C22 3PE . . . J 8 128.101 129.792 119.724 1 38.02 ? C22 3PE 101 D 1 HETATM 28 C C23 3PE . . . J 8 129.258 128.96 120.09 1 38.02 ? C23 3PE 101 D 1 HETATM 29 C C24 3PE . . . J 8 130.264 128.877 118.976 1 38.02 ? C24 3PE 101 D 1 HETATM 30 C C25 3PE . . . J 8 131.507 128.127 119.312 1 38.02 ? C25 3PE 101 D 1 HETATM 31 C C26 3PE . . . J 8 132.135 127.451 118.145 1 38.02 ? C26 3PE 101 D 1 HETATM 32 C C27 3PE . . . J 8 132.99 126.302 118.538 1 38.02 ? C27 3PE 101 D 1 HETATM 33 C C28 3PE . . . J 8 132.651 125.009 117.882 1 38.02 ? C28 3PE 101 D 1 HETATM 34 C C29 3PE . . . J 8 132.925 123.798 118.714 1 38.02 ? C29 3PE 101 D 1 HETATM 35 C C2A 3PE . . . J 8 132.419 122.547 118.077 1 38.02 ? C2A 3PE 101 D 1 HETATM 36 C C2B 3PE . . . J 8 132.327 121.352 118.977 1 38.02 ? C2B 3PE 101 D 1 HETATM 37 C C2C 3PE . . . J 8 132.396 120.059 118.209 1 38.02 ? C2C 3PE 101 D 1 HETATM 38 C C2D 3PE . . . J 8 133.78 119.558 117.884 1 38.02 ? C2D 3PE 101 D 1 HETATM 39 C C2E 3PE . . . J 8 134.594 119.233 119.119 1 38.02 ? C2E 3PE 101 D 1 HETATM 40 C C2F 3PE . . . J 8 136.075 119.539 118.989 1 38.02 ? C2F 3PE 101 D 1 HETATM 41 C C2G 3PE . . . J 8 136.649 119.417 117.6 1 38.02 ? C2G 3PE 101 D 1 HETATM 42 C C2H 3PE . . . J 8 138.123 119.674 117.578 1 38.02 ? C2H 3PE 101 D 1 HETATM 43 C C2I 3PE . . . J 8 138.942 118.513 118.058 1 38.02 ? C2I 3PE 101 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #