data_7F04
#
_model_server_result.job_id            TCHXtY3csOCeI-Y0Vb7XBQ 
_model_server_result.datetime_utc      '2025-03-06 07:02:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7f04 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    7F04 
#
_exptl.entry_id    7F04 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7F04 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7F04 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 43 A THR 41 1_555 G MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc2 G MG MG . A MG 300 1_555 H O3G ATP . A ATP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.706 ? 
metalc ? metalc3 G MG MG . A MG 300 1_555 H O2B ATP . A ATP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? 
metalc ? metalc4 G MG MG . A MG 300 1_555 M O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc5 G MG MG . A MG 300 1_555 M O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc6 C NE2 HIS 60 C HIS 60 1_555 I FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
metalc ? metalc7 E OG1 THR 43 E THR 41 1_555 K MG MG . E MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc8 K MG MG . E MG 300 1_555 L O3G ATP . E ATP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc9 K MG MG . E MG 300 1_555 L O2B ATP . E ATP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? 
metalc ? metalc10 K MG MG . E MG 300 1_555 N O HOH . E HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc11 K MG MG . E MG 300 1_555 N O HOH . E HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 202 n n 
PG O2G ATP sing 203 n n 
PG O3G ATP sing 204 n n 
PG O3B ATP sing 205 n n 
O2G HOG2 ATP sing 206 n n 
O3G HOG3 ATP sing 207 n n 
PB O1B ATP doub 208 n n 
PB O2B ATP sing 209 n n 
PB O3B ATP sing 210 n n 
PB O3A ATP sing 211 n n 
O2B HOB2 ATP sing 212 n n 
PA O1A ATP doub 213 n n 
PA O2A ATP sing 214 n n 
PA O3A ATP sing 215 n n 
PA O5' ATP sing 216 n n 
O2A HOA2 ATP sing 217 n n 
O5' C5' ATP sing 218 n n 
C5' C4' ATP sing 219 n n 
C5' "H5'1" ATP sing 220 n n 
C5' "H5'2" ATP sing 221 n n 
C4' O4' ATP sing 222 n n 
C4' C3' ATP sing 223 n n 
C4' H4' ATP sing 224 n n 
O4' C1' ATP sing 225 n n 
C3' O3' ATP sing 226 n n 
C3' C2' ATP sing 227 n n 
C3' H3' ATP sing 228 n n 
O3' HO3' ATP sing 229 n n 
C2' O2' ATP sing 230 n n 
C2' C1' ATP sing 231 n n 
C2' H2' ATP sing 232 n n 
O2' HO2' ATP sing 233 n n 
C1' N9 ATP sing 234 n n 
C1' H1' ATP sing 235 n n 
N9 C8 ATP sing 236 n y 
N9 C4 ATP sing 237 n y 
C8 N7 ATP doub 238 n y 
C8 H8 ATP sing 239 n n 
N7 C5 ATP sing 240 n y 
C5 C6 ATP sing 241 n y 
C5 C4 ATP doub 242 n y 
C6 N6 ATP sing 243 n n 
C6 N1 ATP doub 244 n y 
N6 HN61 ATP sing 245 n n 
N6 HN62 ATP sing 246 n n 
N1 C2 ATP sing 247 n y 
C2 N3 ATP doub 248 n y 
C2 H2 ATP sing 249 n n 
N3 C4 ATP sing 250 n y 
#
_atom_sites.entry_id                     7F04 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 MG A 1 300 300 MG MG . 
H 6 ATP A 1 301 301 ATP ATP . 
I 7 HEM C 1 301 301 HEM HEM . 
J 8 3PE D 1 101 302 3PE PEH . 
K 5 MG E 1 300 300 MG MG . 
L 6 ATP E 1 301 301 ATP ATP . 
M 9 HOH A 1 401 303 HOH HOH . 
M 9 HOH A 2 402 302 HOH HOH . 
N 9 HOH E 1 401 302 HOH HOH . 
N 9 HOH E 2 402 303 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . H 6 113.503 140.097 165.095 1 39.99 ? PG ATP 301 A 1 
HETATM 2 O O1G ATP . . . H 6 112.133 140.201 165.718 1 39.99 ? O1G ATP 301 A 1 
HETATM 3 O O2G ATP . . . H 6 114.074 141.412 164.643 1 39.99 ? O2G ATP 301 A 1 
HETATM 4 O O3G ATP . . . H 6 113.66 138.985 164.09 1 39.99 ? O3G ATP 301 A 1 
HETATM 5 P PB ATP . . . H 6 114.324 138.174 166.943 1 39.99 ? PB ATP 301 A 1 
HETATM 6 O O1B ATP . . . H 6 113.359 138.276 168.093 1 39.99 ? O1B ATP 301 A 1 
HETATM 7 O O2B ATP . . . H 6 114.083 137.203 165.819 1 39.99 ? O2B ATP 301 A 1 
HETATM 8 O O3B ATP . . . H 6 114.459 139.643 166.305 1 39.99 ? O3B ATP 301 A 1 
HETATM 9 P PA ATP . . . H 6 116.52 136.501 167.645 1 39.99 ? PA ATP 301 A 1 
HETATM 10 O O1A ATP . . . H 6 117.122 136.149 166.308 1 39.99 ? O1A ATP 301 A 1 
HETATM 11 O O2A ATP . . . H 6 115.604 135.543 168.359 1 39.99 ? O2A ATP 301 A 1 
HETATM 12 O O3A ATP . . . H 6 115.794 137.933 167.544 1 39.99 ? O3A ATP 301 A 1 
HETATM 13 O O5' ATP . . . H 6 117.72 136.869 168.645 1 39.99 ? O5' ATP 301 A 1 
HETATM 14 C C5' ATP . . . H 6 118.025 136.052 169.768 1 39.99 ? C5' ATP 301 A 1 
HETATM 15 C C4' ATP . . . H 6 119.34 136.528 170.37 1 39.99 ? C4' ATP 301 A 1 
HETATM 16 O O4' ATP . . . H 6 120.367 135.574 170.1 1 39.99 ? O4' ATP 301 A 1 
HETATM 17 C C3' ATP . . . H 6 119.778 137.849 169.765 1 39.99 ? C3' ATP 301 A 1 
HETATM 18 O O3' ATP . . . H 6 119.79 138.861 170.774 1 39.99 ? O3' ATP 301 A 1 
HETATM 19 C C2' ATP . . . H 6 121.184 137.625 169.251 1 39.99 ? C2' ATP 301 A 1 
HETATM 20 O O2' ATP . . . H 6 122.068 138.585 169.833 1 39.99 ? O2' ATP 301 A 1 
HETATM 21 C C1' ATP . . . H 6 121.572 136.226 169.697 1 39.99 ? C1' ATP 301 A 1 
HETATM 22 N N9 ATP . . . H 6 122.218 135.445 168.608 1 39.99 ? N9 ATP 301 A 1 
HETATM 23 C C8 ATP . . . H 6 123.318 134.684 168.765 1 39.99 ? C8 ATP 301 A 1 
HETATM 24 N N7 ATP . . . H 6 123.682 134.09 167.602 1 39.99 ? N7 ATP 301 A 1 
HETATM 25 C C5 ATP . . . H 6 122.8 134.475 166.665 1 39.99 ? C5 ATP 301 A 1 
HETATM 26 C C6 ATP . . . H 6 122.607 134.214 165.22 1 39.99 ? C6 ATP 301 A 1 
HETATM 27 N N6 ATP . . . H 6 123.452 133.405 164.539 1 39.99 ? N6 ATP 301 A 1 
HETATM 28 N N1 ATP . . . H 6 121.562 134.81 164.606 1 39.99 ? N1 ATP 301 A 1 
HETATM 29 C C2 ATP . . . H 6 120.717 135.616 165.274 1 39.99 ? C2 ATP 301 A 1 
HETATM 30 N N3 ATP . . . H 6 120.833 135.895 166.585 1 39.99 ? N3 ATP 301 A 1 
HETATM 31 C C4 ATP . . . H 6 121.838 135.37 167.328 1 39.99 ? C4 ATP 301 A 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           31 
#