data_7F04 # _model_server_result.job_id eOHuO591BUyLp1HKzRPXAQ _model_server_result.datetime_utc '2024-11-19 13:18:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 7F04 # _exptl.entry_id 7F04 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F04 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 43 A THR 41 1_555 G MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc2 G MG MG . A MG 300 1_555 H O3G ATP . A ATP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.706 ? metalc ? metalc3 G MG MG . A MG 300 1_555 H O2B ATP . A ATP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? metalc ? metalc4 G MG MG . A MG 300 1_555 M O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc5 G MG MG . A MG 300 1_555 M O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc6 C NE2 HIS 60 C HIS 60 1_555 I FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc7 E OG1 THR 43 E THR 41 1_555 K MG MG . E MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc8 K MG MG . E MG 300 1_555 L O3G ATP . E ATP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc9 K MG MG . E MG 300 1_555 L O2B ATP . E ATP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? metalc ? metalc10 K MG MG . E MG 300 1_555 N O HOH . E HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc11 K MG MG . E MG 300 1_555 N O HOH . E HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 310 n n CHA C4D HEM doub 311 n n CHA HHA HEM sing 312 n n CHB C4A HEM sing 313 n n CHB C1B HEM doub 314 n n CHB HHB HEM sing 315 n n CHC C4B HEM sing 316 n n CHC C1C HEM doub 317 n n CHC HHC HEM sing 318 n n CHD C4C HEM doub 319 n n CHD C1D HEM sing 320 n n CHD HHD HEM sing 321 n n C1A C2A HEM doub 322 n y C1A NA HEM sing 323 n y C2A C3A HEM sing 324 n y C2A CAA HEM sing 325 n n C3A C4A HEM doub 326 n y C3A CMA HEM sing 327 n n C4A NA HEM sing 328 n y CMA HMA HEM sing 329 n n CMA HMAA HEM sing 330 n n CMA HMAB HEM sing 331 n n CAA CBA HEM sing 332 n n CAA HAA HEM sing 333 n n CAA HAAA HEM sing 334 n n CBA CGA HEM sing 335 n n CBA HBA HEM sing 336 n n CBA HBAA HEM sing 337 n n CGA O1A HEM doub 338 n n CGA O2A HEM sing 339 n n C1B C2B HEM sing 340 n n C1B NB HEM sing 341 n n C2B C3B HEM doub 342 n n C2B CMB HEM sing 343 n n C3B C4B HEM sing 344 n n C3B CAB HEM sing 345 n n C4B NB HEM doub 346 n n CMB HMB HEM sing 347 n n CMB HMBA HEM sing 348 n n CMB HMBB HEM sing 349 n n CAB CBB HEM doub 350 n n CAB HAB HEM sing 351 n n CBB HBB HEM sing 352 n n CBB HBBA HEM sing 353 n n C1C C2C HEM sing 354 n y C1C NC HEM sing 355 n y C2C C3C HEM doub 356 n y C2C CMC HEM sing 357 n n C3C C4C HEM sing 358 n y C3C CAC HEM sing 359 n n C4C NC HEM sing 360 n y CMC HMC HEM sing 361 n n CMC HMCA HEM sing 362 n n CMC HMCB HEM sing 363 n n CAC CBC HEM doub 364 n n CAC HAC HEM sing 365 n n CBC HBC HEM sing 366 n n CBC HBCA HEM sing 367 n n C1D C2D HEM sing 368 n n C1D ND HEM doub 369 n n C2D C3D HEM doub 370 n n C2D CMD HEM sing 371 n n C3D C4D HEM sing 372 n n C3D CAD HEM sing 373 n n C4D ND HEM sing 374 n n CMD HMD HEM sing 375 n n CMD HMDA HEM sing 376 n n CMD HMDB HEM sing 377 n n CAD CBD HEM sing 378 n n CAD HAD HEM sing 379 n n CAD HADA HEM sing 380 n n CBD CGD HEM sing 381 n n CBD HBD HEM sing 382 n n CBD HBDA HEM sing 383 n n CGD O1D HEM doub 384 n n CGD O2D HEM sing 385 n n O2A H2A HEM sing 386 n n O2D H2D HEM sing 387 n n FE NA HEM sing 388 n n FE NB HEM sing 389 n n FE NC HEM sing 390 n n FE ND HEM sing 391 n n # _atom_sites.entry_id 7F04 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 MG A 1 300 300 MG MG . H 6 ATP A 1 301 301 ATP ATP . I 7 HEM C 1 301 301 HEM HEM . J 8 3PE D 1 101 302 3PE PEH . K 5 MG E 1 300 300 MG MG . L 6 ATP E 1 301 301 ATP ATP . M 9 HOH A 1 401 303 HOH HOH . M 9 HOH A 2 402 302 HOH HOH . N 9 HOH E 1 401 302 HOH HOH . N 9 HOH E 2 402 303 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . I 7 146.64 133.371 107.303 1 38.56 ? CHA HEM 301 C 1 HETATM 2 C CHB HEM . . . I 7 146.06 131.316 111.639 1 38.56 ? CHB HEM 301 C 1 HETATM 3 C CHC HEM . . . I 7 148.04 127.201 109.98 1 38.56 ? CHC HEM 301 C 1 HETATM 4 C CHD HEM . . . I 7 149.004 129.425 105.775 1 38.56 ? CHD HEM 301 C 1 HETATM 5 C C1A HEM . . . I 7 146.354 133.218 108.64 1 38.56 ? C1A HEM 301 C 1 HETATM 6 C C2A HEM . . . I 7 145.884 134.235 109.569 1 38.56 ? C2A HEM 301 C 1 HETATM 7 C C3A HEM . . . I 7 145.728 133.653 110.759 1 38.56 ? C3A HEM 301 C 1 HETATM 8 C C4A HEM . . . I 7 146.088 132.256 110.637 1 38.56 ? C4A HEM 301 C 1 HETATM 9 C CMA HEM . . . I 7 145.247 134.352 112.047 1 38.56 ? CMA HEM 301 C 1 HETATM 10 C CAA HEM . . . I 7 145.6 135.73 109.288 1 38.56 ? CAA HEM 301 C 1 HETATM 11 C CBA HEM . . . I 7 146.759 136.428 108.58 1 38.56 ? CBA HEM 301 C 1 HETATM 12 C CGA HEM . . . I 7 147.842 136.795 109.561 1 38.56 ? CGA HEM 301 C 1 HETATM 13 O O1A HEM . . . I 7 148.846 137.424 109.134 1 38.56 ? O1A HEM 301 C 1 HETATM 14 O O2A HEM . . . I 7 147.705 136.464 110.767 1 38.56 ? O2A HEM 301 C 1 HETATM 15 C C1B HEM . . . I 7 146.45 129.999 111.529 1 38.56 ? C1B HEM 301 C 1 HETATM 16 C C2B HEM . . . I 7 146.16 128.949 112.478 1 38.56 ? C2B HEM 301 C 1 HETATM 17 C C3B HEM . . . I 7 146.702 127.819 112.051 1 38.56 ? C3B HEM 301 C 1 HETATM 18 C C4B HEM . . . I 7 147.359 128.092 110.782 1 38.56 ? C4B HEM 301 C 1 HETATM 19 C CMB HEM . . . I 7 145.371 129.083 113.788 1 38.56 ? CMB HEM 301 C 1 HETATM 20 C CAB HEM . . . I 7 146.574 126.497 112.84 1 38.56 ? CAB HEM 301 C 1 HETATM 21 C CBB HEM . . . I 7 147.328 125.433 112.572 1 38.56 ? CBB HEM 301 C 1 HETATM 22 C C1C HEM . . . I 7 148.526 127.456 108.717 1 38.56 ? C1C HEM 301 C 1 HETATM 23 C C2C HEM . . . I 7 149.342 126.565 107.923 1 38.56 ? C2C HEM 301 C 1 HETATM 24 C C3C HEM . . . I 7 149.625 127.165 106.766 1 38.56 ? C3C HEM 301 C 1 HETATM 25 C C4C HEM . . . I 7 148.981 128.471 106.773 1 38.56 ? C4C HEM 301 C 1 HETATM 26 C CMC HEM . . . I 7 149.824 125.162 108.346 1 38.56 ? CMC HEM 301 C 1 HETATM 27 C CAC HEM . . . I 7 150.484 126.516 105.654 1 38.56 ? CAC HEM 301 C 1 HETATM 28 C CBC HEM . . . I 7 150.909 127.187 104.579 1 38.56 ? CBC HEM 301 C 1 HETATM 29 C C1D HEM . . . I 7 148.504 130.707 105.841 1 38.56 ? C1D HEM 301 C 1 HETATM 30 C C2D HEM . . . I 7 148.73 131.759 104.873 1 38.56 ? C2D HEM 301 C 1 HETATM 31 C C3D HEM . . . I 7 148.093 132.858 105.283 1 38.56 ? C3D HEM 301 C 1 HETATM 32 C C4D HEM . . . I 7 147.421 132.536 106.533 1 38.56 ? C4D HEM 301 C 1 HETATM 33 C CMD HEM . . . I 7 149.577 131.637 103.589 1 38.56 ? CMD HEM 301 C 1 HETATM 34 C CAD HEM . . . I 7 148.082 134.202 104.509 1 38.56 ? CAD HEM 301 C 1 HETATM 35 C CBD HEM . . . I 7 148.324 135.41 105.411 1 38.56 ? CBD HEM 301 C 1 HETATM 36 C CGD HEM . . . I 7 148 136.68 104.669 1 38.56 ? CGD HEM 301 C 1 HETATM 37 O O1D HEM . . . I 7 148.179 136.712 103.424 1 38.56 ? O1D HEM 301 C 1 HETATM 38 O O2D HEM . . . I 7 147.57 137.665 105.322 1 38.56 ? O2D HEM 301 C 1 HETATM 39 N NA HEM . . . I 7 146.463 132.027 109.33 1 38.56 ? NA HEM 301 C 1 HETATM 40 N NB HEM . . . I 7 147.184 129.437 110.502 1 38.56 ? NB HEM 301 C 1 HETATM 41 N NC HEM . . . I 7 148.325 128.609 107.983 1 38.56 ? NC HEM 301 C 1 HETATM 42 N ND HEM . . . I 7 147.7 131.217 106.839 1 38.56 ? ND HEM 301 C 1 HETATM 43 FE FE HEM . . . I 7 147.453 130.342 108.677 1 38.56 ? FE HEM 301 C 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #