data_7F04 # _model_server_result.job_id sxEoLwZfrqfRrgBmSDIO7g _model_server_result.datetime_utc '2024-11-19 13:27:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":301}' # _entry.id 7F04 # _exptl.entry_id 7F04 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F04 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 43 A THR 41 1_555 G MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc2 G MG MG . A MG 300 1_555 H O3G ATP . A ATP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.706 ? metalc ? metalc3 G MG MG . A MG 300 1_555 H O2B ATP . A ATP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? metalc ? metalc4 G MG MG . A MG 300 1_555 M O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc5 G MG MG . A MG 300 1_555 M O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc6 C NE2 HIS 60 C HIS 60 1_555 I FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc7 E OG1 THR 43 E THR 41 1_555 K MG MG . E MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc8 K MG MG . E MG 300 1_555 L O3G ATP . E ATP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc9 K MG MG . E MG 300 1_555 L O2B ATP . E ATP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? metalc ? metalc10 K MG MG . E MG 300 1_555 N O HOH . E HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc11 K MG MG . E MG 300 1_555 N O HOH . E HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 202 n n PG O2G ATP sing 203 n n PG O3G ATP sing 204 n n PG O3B ATP sing 205 n n O2G HOG2 ATP sing 206 n n O3G HOG3 ATP sing 207 n n PB O1B ATP doub 208 n n PB O2B ATP sing 209 n n PB O3B ATP sing 210 n n PB O3A ATP sing 211 n n O2B HOB2 ATP sing 212 n n PA O1A ATP doub 213 n n PA O2A ATP sing 214 n n PA O3A ATP sing 215 n n PA O5' ATP sing 216 n n O2A HOA2 ATP sing 217 n n O5' C5' ATP sing 218 n n C5' C4' ATP sing 219 n n C5' "H5'1" ATP sing 220 n n C5' "H5'2" ATP sing 221 n n C4' O4' ATP sing 222 n n C4' C3' ATP sing 223 n n C4' H4' ATP sing 224 n n O4' C1' ATP sing 225 n n C3' O3' ATP sing 226 n n C3' C2' ATP sing 227 n n C3' H3' ATP sing 228 n n O3' HO3' ATP sing 229 n n C2' O2' ATP sing 230 n n C2' C1' ATP sing 231 n n C2' H2' ATP sing 232 n n O2' HO2' ATP sing 233 n n C1' N9 ATP sing 234 n n C1' H1' ATP sing 235 n n N9 C8 ATP sing 236 n y N9 C4 ATP sing 237 n y C8 N7 ATP doub 238 n y C8 H8 ATP sing 239 n n N7 C5 ATP sing 240 n y C5 C6 ATP sing 241 n y C5 C4 ATP doub 242 n y C6 N6 ATP sing 243 n n C6 N1 ATP doub 244 n y N6 HN61 ATP sing 245 n n N6 HN62 ATP sing 246 n n N1 C2 ATP sing 247 n y C2 N3 ATP doub 248 n y C2 H2 ATP sing 249 n n N3 C4 ATP sing 250 n y # _atom_sites.entry_id 7F04 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 MG A 1 300 300 MG MG . H 6 ATP A 1 301 301 ATP ATP . I 7 HEM C 1 301 301 HEM HEM . J 8 3PE D 1 101 302 3PE PEH . K 5 MG E 1 300 300 MG MG . L 6 ATP E 1 301 301 ATP ATP . M 9 HOH A 1 401 303 HOH HOH . M 9 HOH A 2 402 302 HOH HOH . N 9 HOH E 1 401 302 HOH HOH . N 9 HOH E 2 402 303 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . L 6 108.174 146.555 147.621 1 42.37 ? PG ATP 301 E 1 HETATM 2 O O1G ATP . . . L 6 107.113 147.505 148.121 1 42.37 ? O1G ATP 301 E 1 HETATM 3 O O2G ATP . . . L 6 107.84 145.098 147.824 1 42.37 ? O2G ATP 301 E 1 HETATM 4 O O3G ATP . . . L 6 109.586 146.928 148.002 1 42.37 ? O3G ATP 301 E 1 HETATM 5 P PB ATP . . . L 6 108.655 148.095 145.328 1 42.37 ? PB ATP 301 E 1 HETATM 6 O O1B ATP . . . L 6 107.552 149.112 145.453 1 42.37 ? O1B ATP 301 E 1 HETATM 7 O O2B ATP . . . L 6 110.04 148.399 145.834 1 42.37 ? O2B ATP 301 E 1 HETATM 8 O O3B ATP . . . L 6 108.152 146.735 146.023 1 42.37 ? O3B ATP 301 E 1 HETATM 9 P PA ATP . . . L 6 109.871 148.186 142.772 1 42.37 ? PA ATP 301 E 1 HETATM 10 O O1A ATP . . . L 6 111.153 147.424 142.99 1 42.37 ? O1A ATP 301 E 1 HETATM 11 O O2A ATP . . . L 6 109.887 149.688 142.82 1 42.37 ? O2A ATP 301 E 1 HETATM 12 O O3A ATP . . . L 6 108.741 147.659 143.786 1 42.37 ? O3A ATP 301 E 1 HETATM 13 O O5' ATP . . . L 6 109.247 147.71 141.369 1 42.37 ? O5' ATP 301 E 1 HETATM 14 C C5' ATP . . . L 6 109.924 147.915 140.135 1 42.37 ? C5' ATP 301 E 1 HETATM 15 C C4' ATP . . . L 6 109.346 146.954 139.108 1 42.37 ? C4' ATP 301 E 1 HETATM 16 O O4' ATP . . . L 6 110.296 146.738 138.065 1 42.37 ? O4' ATP 301 E 1 HETATM 17 C C3' ATP . . . L 6 109.057 145.603 139.738 1 42.37 ? C3' ATP 301 E 1 HETATM 18 O O3' ATP . . . L 6 107.653 145.344 139.703 1 42.37 ? O3' ATP 301 E 1 HETATM 19 C C2' ATP . . . L 6 109.787 144.579 138.897 1 42.37 ? C2' ATP 301 E 1 HETATM 20 O O2' ATP . . . L 6 108.864 143.602 138.41 1 42.37 ? O2' ATP 301 E 1 HETATM 21 C C1' ATP . . . L 6 110.392 145.351 137.736 1 42.37 ? C1' ATP 301 E 1 HETATM 22 N N9 ATP . . . L 6 111.817 144.979 137.536 1 42.37 ? N9 ATP 301 E 1 HETATM 23 C C8 ATP . . . L 6 112.359 144.579 136.37 1 42.37 ? C8 ATP 301 E 1 HETATM 24 N N7 ATP . . . L 6 113.681 144.308 136.507 1 42.37 ? N7 ATP 301 E 1 HETATM 25 C C5 ATP . . . L 6 114.005 144.533 137.792 1 42.37 ? C5 ATP 301 E 1 HETATM 26 C C6 ATP . . . L 6 115.237 144.441 138.61 1 42.37 ? C6 ATP 301 E 1 HETATM 27 N N6 ATP . . . L 6 116.411 144.043 138.065 1 42.37 ? N6 ATP 301 E 1 HETATM 28 N N1 ATP . . . L 6 115.149 144.767 139.918 1 42.37 ? N1 ATP 301 E 1 HETATM 29 C C2 ATP . . . L 6 113.987 145.163 140.471 1 42.37 ? C2 ATP 301 E 1 HETATM 30 N N3 ATP . . . L 6 112.834 145.27 139.788 1 42.37 ? N3 ATP 301 E 1 HETATM 31 C C4 ATP . . . L 6 112.774 144.972 138.468 1 42.37 ? C4 ATP 301 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #