data_7F0I # _model_server_result.job_id 7uPumglzjB_iCHQg5qxH4g _model_server_result.datetime_utc '2024-11-22 04:57:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f0i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 7F0I # _exptl.entry_id 7F0I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 388.439 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-cyclopentyl-6-[[(2R)-1-(6-fluoranyl-2-azaspiro[3.3]heptan-2-yl)-1-oxidanylidene-propan-2-yl]amino]-5H-pyrazolo[3,4-d]pyrimidin-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F0I _cell.length_a 103.467 _cell.length_b 103.467 _cell.length_c 268.921 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F0I _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 292 A HIS 292 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc2 A OD2 ASP 293 A ASP 293 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc3 A OD1 ASP 293 A ASP 293 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc4 A OD1 ASP 402 A ASP 402 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc5 B NE2 HIS 256 B HIS 256 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc6 B OD2 ASP 293 B ASP 293 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc7 B OD1 ASP 293 B ASP 293 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc8 B OD1 ASP 402 B ASP 402 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? # _chem_comp.formula 'C19 H25 F N6 O2' _chem_comp.formula_weight 388.439 _chem_comp.id 06A _chem_comp.mon_nstd_flag . _chem_comp.name 1-cyclopentyl-6-[[(2R)-1-(6-fluoranyl-2-azaspiro[3.3]heptan-2-yl)-1-oxidanylidene-propan-2-yl]amino]-5H-pyrazolo[3,4-d]pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F C16 06A sing 1 n n C15 C16 06A sing 2 n n C15 C13 06A sing 3 n n C16 C17 06A sing 4 n n C17 C13 06A sing 5 n n C13 C12 06A sing 6 n n C13 C14 06A sing 7 n n C12 N5 06A sing 8 n n C14 N5 06A sing 9 n n N5 C11 06A sing 10 n n C7 C8 06A sing 11 n n C7 C6 06A sing 12 n n C8 C9 06A sing 13 n n O1 C11 06A doub 14 n n C11 C10 06A sing 15 n n C6 C5 06A sing 16 n n C18 C10 06A sing 17 n n C10 N4 06A sing 18 n n C9 C5 06A sing 19 n n C5 N3 06A sing 20 n n N4 C1 06A sing 21 n n N1 C1 06A doub 22 n n N1 C2 06A sing 23 n n N3 C2 06A sing 24 n y N3 N2 06A sing 25 n y C1 N 06A sing 26 n n C2 C3 06A doub 27 n y N2 C4 06A doub 28 n y N C 06A sing 29 n n C3 C4 06A sing 30 n y C3 C 06A sing 31 n n C O 06A doub 32 n n C4 H1 06A sing 33 n n C5 H2 06A sing 34 n n C6 H3 06A sing 35 n n C6 H4 06A sing 36 n n C7 H5 06A sing 37 n n C7 H6 06A sing 38 n n C8 H7 06A sing 39 n n C8 H8 06A sing 40 n n C9 H9 06A sing 41 n n C9 H10 06A sing 42 n n C10 H11 06A sing 43 n n C12 H12 06A sing 44 n n C12 H13 06A sing 45 n n C14 H14 06A sing 46 n n C14 H15 06A sing 47 n n C15 H16 06A sing 48 n n C15 H17 06A sing 49 n n C16 H18 06A sing 50 n n C17 H19 06A sing 51 n n C17 H20 06A sing 52 n n C18 H21 06A sing 53 n n C18 H22 06A sing 54 n n C18 H23 06A sing 55 n n N4 H24 06A sing 56 n n N H25 06A sing 57 n n # _atom_sites.entry_id 7F0I _atom_sites.fract_transf_matrix[1][1] 0.009665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009665 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 1 ZN ZN . D 3 MG A 1 602 1 MG MG . E 4 06A A 1 603 1 06A LZP . F 2 ZN B 1 601 2 ZN ZN . G 3 MG B 1 602 2 MG MG . H 4 06A B 1 603 2 06A LZP . I 5 HOH A 1 701 34 HOH HOH . I 5 HOH A 2 702 33 HOH HOH . I 5 HOH A 3 703 31 HOH HOH . I 5 HOH A 4 704 62 HOH HOH . I 5 HOH A 5 705 84 HOH HOH . I 5 HOH A 6 706 55 HOH HOH . I 5 HOH A 7 707 20 HOH HOH . I 5 HOH A 8 708 2 HOH HOH . I 5 HOH A 9 709 4 HOH HOH . I 5 HOH A 10 710 54 HOH HOH . I 5 HOH A 11 711 23 HOH HOH . I 5 HOH A 12 712 74 HOH HOH . I 5 HOH A 13 713 36 HOH HOH . I 5 HOH A 14 714 73 HOH HOH . I 5 HOH A 15 715 47 HOH HOH . I 5 HOH A 16 716 14 HOH HOH . I 5 HOH A 17 717 37 HOH HOH . I 5 HOH A 18 718 105 HOH HOH . I 5 HOH A 19 719 107 HOH HOH . I 5 HOH A 20 720 80 HOH HOH . I 5 HOH A 21 721 58 HOH HOH . I 5 HOH A 22 722 3 HOH HOH . I 5 HOH A 23 723 109 HOH HOH . I 5 HOH A 24 724 111 HOH HOH . I 5 HOH A 25 725 78 HOH HOH . I 5 HOH A 26 726 49 HOH HOH . I 5 HOH A 27 727 18 HOH HOH . I 5 HOH A 28 728 60 HOH HOH . I 5 HOH A 29 729 25 HOH HOH . I 5 HOH A 30 730 30 HOH HOH . I 5 HOH A 31 731 108 HOH HOH . I 5 HOH A 32 732 102 HOH HOH . I 5 HOH A 33 733 57 HOH HOH . I 5 HOH A 34 734 93 HOH HOH . I 5 HOH A 35 735 26 HOH HOH . I 5 HOH A 36 736 10 HOH HOH . I 5 HOH A 37 737 113 HOH HOH . I 5 HOH A 38 738 56 HOH HOH . I 5 HOH A 39 739 27 HOH HOH . I 5 HOH A 40 740 79 HOH HOH . I 5 HOH A 41 741 19 HOH HOH . I 5 HOH A 42 742 61 HOH HOH . I 5 HOH A 43 743 70 HOH HOH . I 5 HOH A 44 744 22 HOH HOH . I 5 HOH A 45 745 86 HOH HOH . I 5 HOH A 46 746 52 HOH HOH . I 5 HOH A 47 747 21 HOH HOH . I 5 HOH A 48 748 1 HOH HOH . I 5 HOH A 49 749 110 HOH HOH . I 5 HOH A 50 750 85 HOH HOH . I 5 HOH A 51 751 53 HOH HOH . I 5 HOH A 52 752 99 HOH HOH . I 5 HOH A 53 753 92 HOH HOH . I 5 HOH A 54 754 66 HOH HOH . I 5 HOH A 55 755 115 HOH HOH . I 5 HOH A 56 756 101 HOH HOH . I 5 HOH A 57 757 90 HOH HOH . I 5 HOH A 58 758 43 HOH HOH . I 5 HOH A 59 759 12 HOH HOH . J 5 HOH B 1 701 17 HOH HOH . J 5 HOH B 2 702 82 HOH HOH . J 5 HOH B 3 703 24 HOH HOH . J 5 HOH B 4 704 81 HOH HOH . J 5 HOH B 5 705 114 HOH HOH . J 5 HOH B 6 706 44 HOH HOH . J 5 HOH B 7 707 13 HOH HOH . J 5 HOH B 8 708 67 HOH HOH . J 5 HOH B 9 709 64 HOH HOH . J 5 HOH B 10 710 40 HOH HOH . J 5 HOH B 11 711 50 HOH HOH . J 5 HOH B 12 712 16 HOH HOH . J 5 HOH B 13 713 68 HOH HOH . J 5 HOH B 14 714 65 HOH HOH . J 5 HOH B 15 715 71 HOH HOH . J 5 HOH B 16 716 42 HOH HOH . J 5 HOH B 17 717 15 HOH HOH . J 5 HOH B 18 718 29 HOH HOH . J 5 HOH B 19 719 83 HOH HOH . J 5 HOH B 20 720 96 HOH HOH . J 5 HOH B 21 721 9 HOH HOH . J 5 HOH B 22 722 8 HOH HOH . J 5 HOH B 23 723 75 HOH HOH . J 5 HOH B 24 724 7 HOH HOH . J 5 HOH B 25 725 28 HOH HOH . J 5 HOH B 26 726 76 HOH HOH . J 5 HOH B 27 727 88 HOH HOH . J 5 HOH B 28 728 39 HOH HOH . J 5 HOH B 29 729 95 HOH HOH . J 5 HOH B 30 730 38 HOH HOH . J 5 HOH B 31 731 48 HOH HOH . J 5 HOH B 32 732 106 HOH HOH . J 5 HOH B 33 733 98 HOH HOH . J 5 HOH B 34 734 100 HOH HOH . J 5 HOH B 35 735 32 HOH HOH . J 5 HOH B 36 736 11 HOH HOH . J 5 HOH B 37 737 112 HOH HOH . J 5 HOH B 38 738 5 HOH HOH . J 5 HOH B 39 739 72 HOH HOH . J 5 HOH B 40 740 41 HOH HOH . J 5 HOH B 41 741 6 HOH HOH . J 5 HOH B 42 742 63 HOH HOH . J 5 HOH B 43 743 89 HOH HOH . J 5 HOH B 44 744 77 HOH HOH . J 5 HOH B 45 745 51 HOH HOH . J 5 HOH B 46 746 97 HOH HOH . J 5 HOH B 47 747 46 HOH HOH . J 5 HOH B 48 748 94 HOH HOH . J 5 HOH B 49 749 116 HOH HOH . J 5 HOH B 50 750 45 HOH HOH . J 5 HOH B 51 751 35 HOH HOH . J 5 HOH B 52 752 59 HOH HOH . J 5 HOH B 53 753 103 HOH HOH . J 5 HOH B 54 754 104 HOH HOH . J 5 HOH B 55 755 69 HOH HOH . J 5 HOH B 56 756 91 HOH HOH . J 5 HOH B 57 757 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 06A . . . E 4 -31.4 44.83 -9.802 1 24.54 ? C1 06A 603 A 1 HETATM 2 C C2 06A . . . E 4 -29.317 44.042 -9.507 1 27.31 ? C2 06A 603 A 1 HETATM 3 C C3 06A . . . E 4 -29.474 43.882 -8.132 1 25.04 ? C3 06A 603 A 1 HETATM 4 C C4 06A . . . E 4 -28.191 43.51 -7.688 1 26.87 ? C4 06A 603 A 1 HETATM 5 C C5 06A . . . E 4 -27.303 43.576 -11.072 1 21.19 ? C5 06A 603 A 1 HETATM 6 C C6 06A . . . E 4 -28.102 42.939 -12.197 1 21.78 ? C6 06A 603 A 1 HETATM 7 C C7 06A . . . E 4 -27.322 43.313 -13.43 1 28.12 ? C7 06A 603 A 1 HETATM 8 C C8 06A . . . E 4 -26.368 44.474 -13.037 1 20.02 ? C8 06A 603 A 1 HETATM 9 C C9 06A . . . E 4 -26.753 44.867 -11.65 1 22.15 ? C9 06A 603 A 1 HETATM 10 C C10 06A . . . E 4 -32.45 45.851 -11.904 1 24.17 ? C10 06A 603 A 1 HETATM 11 C C11 06A . . . E 4 -33.256 44.909 -12.801 1 31.05 ? C11 06A 603 A 1 HETATM 12 C C12 06A . . . E 4 -32.937 43.031 -14.547 1 35.01 ? C12 06A 603 A 1 HETATM 13 C C13 06A . . . E 4 -31.466 43.134 -15.012 1 43.54 ? C13 06A 603 A 1 HETATM 14 C C14 06A . . . E 4 -31.264 44.221 -13.934 1 39.95 ? C14 06A 603 A 1 HETATM 15 C C15 06A . . . E 4 -31.09 43.396 -16.484 1 38.93 ? C15 06A 603 A 1 HETATM 16 C C16 06A . . . E 4 -30.049 42.257 -16.452 1 39.85 ? C16 06A 603 A 1 HETATM 17 C C17 06A . . . E 4 -30.537 41.904 -15.039 1 35.36 ? C17 06A 603 A 1 HETATM 18 C C18 06A . . . E 4 -33.076 47.234 -12.034 1 26.52 ? C18 06A 603 A 1 HETATM 19 N N1 06A . . . E 4 -30.262 44.504 -10.393 1 30.45 ? N1 06A 603 A 1 HETATM 20 N N2 06A . . . E 4 -27.324 43.423 -8.677 1 20.31 ? N2 06A 603 A 1 HETATM 21 O O1 06A . . . E 4 -34.437 45.122 -12.985 1 38.51 ? O1 06A 603 A 1 HETATM 22 F F 06A . . . E 4 -30.396 41.209 -17.334 1 39.33 ? F 06A 603 A 1 HETATM 23 N N5 06A . . . E 4 -32.606 43.921 -13.433 1 38.06 ? N5 06A 603 A 1 HETATM 24 N N4 06A . . . E 4 -32.388 45.455 -10.504 1 24.52 ? N4 06A 603 A 1 HETATM 25 N N 06A . . . E 4 -31.649 44.659 -8.47 1 24.95 ? N 06A 603 A 1 HETATM 26 N N3 06A . . . E 4 -28.034 43.734 -9.805 1 22.08 ? N3 06A 603 A 1 HETATM 27 C C 06A . . . E 4 -30.734 44.187 -7.551 1 26.45 ? C 06A 603 A 1 HETATM 28 O O 06A . . . E 4 -31.032 44.036 -6.366 1 26.38 ? O 06A 603 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #