data_7F0L # _model_server_result.job_id XfmopTGHd-L9bMBHyjx-CA _model_server_result.datetime_utc '2024-10-15 10:27:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JC","auth_seq_id":104}' # _entry.id 7F0L # _exptl.entry_id 7F0L _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 749.007 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F0L _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F0L _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 33-meric _pdbx_struct_assembly.oligomeric_count 33 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD,ZD,AE,BE,CE,DE,EE,FE,GE,HE,IE,JE,KE,LE,ME,NE,OE _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 LA N N ? 12 MA N N ? 12 QA N N ? 12 SA N N ? 12 DB N N ? 12 GB N N ? 12 JB N N ? 12 KB N N ? 12 JC N N ? 12 TC N N ? 12 MD N N ? 12 VD N N ? 12 IE N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C FME 1 A FME 1 1_555 D N SER 2 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 F C FME 1 D FME 1 1_555 F N SER 2 D SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 H C FME 1 F FME 1 1_555 H N SER 2 F SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 J C FME 1 I FME 1 1_555 J N SER 2 I SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 L C FME 1 K FME 1 1_555 L N SER 2 K SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 N C FME 1 O FME 1 1_555 N N SER 2 O SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 P C FME 1 Q FME 1 1_555 P N SER 2 Q SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 R C FME 1 S FME 1 1_555 R N SER 2 S SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 T C FME 1 V FME 1 1_555 T N SER 2 V SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 V C FME 1 Y FME 1 1_555 V N SER 2 Y SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 X C FME 1 1 FME 1 1_555 X N SER 2 1 SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 Z C FME 1 3 FME 1 1_555 Z N SER 2 3 SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A NE2 HIS 191 L HIS 190 1_555 WA FE FE . M FE 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc2 A NE2 HIS 231 L HIS 230 1_555 WA FE FE . M FE 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc3 B NE2 HIS 220 M HIS 219 1_555 WA FE FE . M FE 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc4 B OE1 GLU 235 M GLU 234 1_555 WA FE FE . M FE 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc5 B OE2 GLU 235 M GLU 234 1_555 WA FE FE . M FE 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc6 B NE2 HIS 267 M HIS 266 1_555 WA FE FE . M FE 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGV _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PHOSPHATIDYLGLYCEROL;2-VACCENOYL-1-PALMITOYL-SN-GLYCEROL-3-PHOSPHOGLYCEROL # _atom_sites.entry_id 7F0L _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code HA 9 BCL L 1 301 301 BCL BCL . IA 10 BPH L 1 302 302 BPH BPH . JA 11 U10 L 1 303 500 U10 U10 . KA 11 U10 L 1 304 501 U10 U10 . LA 12 PGV L 1 305 802 PGV PGV . MA 12 PGV L 1 306 804 PGV PGV . NA 13 LDA L 1 307 810 LDA LDA . OA 9 BCL L 1 308 401 BCL BCL . PA 9 BCL L 1 309 402 BCL BCL . QA 12 PGV L 1 310 107 PGV PGV . RA 13 LDA L 1 311 101 LDA LDA . SA 12 PGV M 1 801 801 PGV PGV . TA 13 LDA M 1 802 811 LDA LDA . UA 9 BCL M 1 803 403 BCL BCL . VA 10 BPH M 1 804 404 BPH BPH . WA 14 FE M 1 805 500 FE FE . XA 11 U10 M 1 806 501 U10 U10 . YA 15 SPO M 1 807 600 SPO SPO . ZA 16 LMT M 1 808 701 LMT LMT . AB 16 LMT M 1 809 705 LMT LMT . BB 16 LMT M 1 810 706 LMT LMT . CB 17 CDL M 1 811 901 CDL CDL . DB 12 PGV M 1 812 903 PGV PGV . EB 16 LMT H 1 301 301 LMT LMT . FB 16 LMT H 1 302 303 LMT LMT . GB 12 PGV H 1 303 400 PGV PGV . HB 17 CDL H 1 304 401 CDL CDL . IB 17 CDL H 1 305 402 CDL CDL . JB 12 PGV H 1 306 105 PGV PGV . KB 12 PGV H 1 307 106 PGV PGV . LB 16 LMT A 1 701 701 LMT LMT . MB 16 LMT A 1 702 702 LMT LMT . NB 9 BCL A 1 703 101 BCL BCL . OB 16 LMT A 1 704 201 LMT LMT . PB 9 BCL B 1 101 101 BCL BCL . QB 9 BCL D 1 101 101 BCL BCL . RB 15 SPO D 1 102 110 SPO SPO . SB 16 LMT D 1 103 201 LMT LMT . TB 15 SPO E 1 101 111 SPO SPO . UB 9 BCL E 1 102 101 BCL BCL . VB 16 LMT F 1 101 705 LMT LMT . WB 9 BCL F 1 102 101 BCL BCL . XB 15 SPO F 1 103 110 SPO SPO . YB 15 SPO F 1 104 111 SPO SPO . ZB 16 LMT F 1 105 201 LMT LMT . AC 9 BCL G 1 101 101 BCL BCL . BC 15 SPO G 1 102 110 SPO SPO . CC 15 SPO G 1 103 111 SPO SPO . DC 9 BCL I 1 101 101 BCL BCL . EC 16 LMT I 1 102 201 LMT LMT . FC 9 BCL J 1 101 101 BCL BCL . GC 16 LMT K 1 101 302 LMT LMT . HC 9 BCL K 1 102 101 BCL BCL . IC 15 SPO K 1 103 110 SPO SPO . JC 12 PGV K 1 104 201 PGV PGV . KC 15 SPO N 1 101 111 SPO SPO . LC 9 BCL N 1 102 101 BCL BCL . MC 9 BCL O 1 101 101 BCL BCL . NC 15 SPO O 1 102 110 SPO SPO . OC 15 SPO O 1 103 110 SPO SPO . PC 15 SPO P 1 101 111 SPO SPO . QC 9 BCL P 1 102 101 BCL BCL . RC 16 LMT Q 1 101 702 LMT LMT . SC 16 LMT Q 1 102 704 LMT LMT . TC 12 PGV Q 1 103 904 PGV PGV . UC 9 BCL Q 1 104 101 BCL BCL . VC 15 SPO R 1 101 111 SPO SPO . WC 9 BCL R 1 102 101 BCL BCL . XC 16 LMT S 1 101 703 LMT LMT . YC 9 BCL S 1 102 101 BCL BCL . ZC 15 SPO S 1 103 110 SPO SPO . AD 15 SPO S 1 104 111 SPO SPO . BD 16 LMT S 1 105 201 LMT LMT . CD 9 BCL T 1 101 101 BCL BCL . DD 15 SPO T 1 102 111 SPO SPO . ED 9 BCL V 1 101 101 BCL BCL . FD 15 SPO V 1 102 110 SPO SPO . GD 15 SPO V 1 103 110 SPO SPO . HD 9 BCL W 1 101 101 BCL BCL . ID 15 SPO W 1 102 111 SPO SPO . JD 13 LDA Y 1 101 707 LDA LDA . KD 17 CDL Y 1 102 902 CDL CDL . LD 9 BCL Y 1 103 101 BCL BCL . MD 12 PGV Y 1 104 201 PGV PGV . ND 9 BCL Z 1 101 101 BCL BCL . OD 9 BCL 1 1 101 101 BCL BCL . PD 15 SPO 1 1 102 110 SPO SPO . QD 15 SPO 1 1 103 111 SPO SPO . RD 16 LMT 1 1 104 201 LMT LMT . SD 15 SPO 1 1 105 110 SPO SPO . TD 9 BCL 2 1 101 101 BCL BCL . UD 16 LMT 3 1 101 703 LMT LMT . VD 12 PGV 3 1 102 803 PGV PGV . WD 9 BCL 3 1 103 101 BCL BCL . XD 15 SPO 3 1 104 111 SPO SPO . YD 9 BCL 4 1 101 101 BCL BCL . ZD 16 LMT 4 1 102 201 LMT LMT . AE 16 LMT 5 1 101 704 LMT LMT . BE 9 BCL 5 1 102 101 BCL BCL . CE 15 SPO 5 1 103 110 SPO SPO . DE 15 SPO 5 1 104 111 SPO SPO . EE 9 BCL 6 1 101 101 BCL BCL . FE 9 BCL 7 1 101 101 BCL BCL . GE 15 SPO 8 1 101 111 SPO SPO . HE 9 BCL 8 1 102 101 BCL BCL . IE 12 PGV X 1 101 805 PGV PGV . JE 15 SPO X 1 102 110 SPO SPO . KE 13 LDA X 1 103 102 LDA LDA . LE 13 LDA X 1 104 103 LDA LDA . ME 16 LMT X 1 105 104 LMT LMT . NE 16 LMT U 1 101 706 LMT LMT . OE 16 LMT U 1 102 101 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PGV . . . JC 12 146.477 120.888 172.74 1 49.41 ? P PGV 104 K 1 HETATM 2 C C01 PGV . . . JC 12 145.65 124.259 175.55 1 49.41 ? C01 PGV 104 K 1 HETATM 3 C C02 PGV . . . JC 12 144.869 124.014 174.264 1 49.41 ? C02 PGV 104 K 1 HETATM 4 C C03 PGV . . . JC 12 144.839 122.522 173.961 1 49.41 ? C03 PGV 104 K 1 HETATM 5 O O01 PGV . . . JC 12 145.487 124.717 173.188 1 49.41 ? O01 PGV 104 K 1 HETATM 6 O O02 PGV . . . JC 12 145.084 124.669 170.915 1 49.41 ? O02 PGV 104 K 1 HETATM 7 O O03 PGV . . . JC 12 145.44 125.599 175.992 1 49.41 ? O03 PGV 104 K 1 HETATM 8 O O04 PGV . . . JC 12 146.521 125.205 177.984 1 49.41 ? O04 PGV 104 K 1 HETATM 9 O O11 PGV . . . JC 12 146.165 122.018 173.841 1 49.41 ? O11 PGV 104 K 1 HETATM 10 O O12 PGV . . . JC 12 145.662 121.433 171.462 1 49.41 ? O12 PGV 104 K 1 HETATM 11 C C1 PGV . . . JC 12 144.613 124.82 172.03 1 49.41 ? C1 PGV 104 K 1 HETATM 12 C C2 PGV . . . JC 12 143.146 125.127 172.207 1 49.41 ? C2 PGV 104 K 1 HETATM 13 C C3 PGV . . . JC 12 142.484 125.262 170.844 1 49.41 ? C3 PGV 104 K 1 HETATM 14 C C4 PGV . . . JC 12 142.546 126.702 170.356 1 49.41 ? C4 PGV 104 K 1 HETATM 15 C C5 PGV . . . JC 12 141.691 127.591 171.246 1 49.41 ? C5 PGV 104 K 1 HETATM 16 C C6 PGV . . . JC 12 141.556 128.988 170.664 1 49.41 ? C6 PGV 104 K 1 HETATM 17 C C7 PGV . . . JC 12 140.311 129.66 171.22 1 49.41 ? C7 PGV 104 K 1 HETATM 18 C C8 PGV . . . JC 12 140.154 131.067 170.666 1 49.41 ? C8 PGV 104 K 1 HETATM 19 C C9 PGV . . . JC 12 138.75 131.583 170.944 1 49.41 ? C9 PGV 104 K 1 HETATM 20 C C10 PGV . . . JC 12 138.769 133.07 171.26 1 49.41 ? C10 PGV 104 K 1 HETATM 21 C C11 PGV . . . JC 12 139.75 133.342 172.376 1 49.41 ? C11 PGV 104 K 1 HETATM 22 C C12 PGV . . . JC 12 139.832 134.562 172.892 1 49.41 ? C12 PGV 104 K 1 HETATM 23 C C13 PGV . . . JC 12 138.938 135.656 172.364 1 49.41 ? C13 PGV 104 K 1 HETATM 24 C C14 PGV . . . JC 12 137.784 135.897 173.332 1 49.41 ? C14 PGV 104 K 1 HETATM 25 C C15 PGV . . . JC 12 138.275 136.513 174.634 1 49.41 ? C15 PGV 104 K 1 HETATM 26 C C16 PGV . . . JC 12 138.894 137.881 174.381 1 49.41 ? C16 PGV 104 K 1 HETATM 27 C C17 PGV . . . JC 12 137.844 138.981 174.461 1 49.41 ? C17 PGV 104 K 1 HETATM 28 C C18 PGV . . . JC 12 137.755 139.539 175.864 1 49.41 ? C18 PGV 104 K 1 HETATM 29 C C19 PGV . . . JC 12 146.041 126.037 177.238 1 49.41 ? C19 PGV 104 K 1 HETATM 30 C C20 PGV . . . JC 12 146.076 127.497 177.603 1 49.41 ? C20 PGV 104 K 1 HETATM 31 C C21 PGV . . . JC 12 144.767 127.854 178.288 1 49.41 ? C21 PGV 104 K 1 HETATM 32 C C22 PGV . . . JC 12 144.579 127.109 179.606 1 49.41 ? C22 PGV 104 K 1 HETATM 33 C C23 PGV . . . JC 12 143.294 127.537 180.307 1 49.41 ? C23 PGV 104 K 1 HETATM 34 C C24 PGV . . . JC 12 143.316 129.018 180.671 1 49.41 ? C24 PGV 104 K 1 HETATM 35 C C25 PGV . . . JC 12 142.43 129.854 179.757 1 49.41 ? C25 PGV 104 K 1 HETATM 36 C C26 PGV . . . JC 12 143.221 131.014 179.162 1 49.41 ? C26 PGV 104 K 1 HETATM 37 C C27 PGV . . . JC 12 143.366 132.159 180.157 1 49.41 ? C27 PGV 104 K 1 HETATM 38 C C28 PGV . . . JC 12 144.832 132.505 180.382 1 49.41 ? C28 PGV 104 K 1 HETATM 39 C C29 PGV . . . JC 12 145.01 134.003 180.583 1 49.41 ? C29 PGV 104 K 1 HETATM 40 C C30 PGV . . . JC 12 144.408 134.774 179.416 1 49.41 ? C30 PGV 104 K 1 HETATM 41 C C31 PGV . . . JC 12 144.762 136.253 179.484 1 49.41 ? C31 PGV 104 K 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 79 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 41 #