data_7F1O # _model_server_result.job_id PCyJw4Gofyz-vkL3UsEzJQ _model_server_result.datetime_utc '2024-11-21 23:15:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f1o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 7F1O # _exptl.entry_id 7F1O _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 153.178 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-DOPAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F1O _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F1O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 123 F CYS 96 1_555 A SG CYS 213 F CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 E SG CYS 44 E CYS 22 1_555 E SG CYS 118 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 E SG CYS 121 E CYS 99 1_555 E SG CYS 129 E CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 B OG SER 49 A SER 54 1_555 G MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc2 G MG MG . A MG 401 1_555 H O2B GDP . A GDP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? # _chem_comp.formula 'C8 H11 N O2' _chem_comp.formula_weight 153.178 _chem_comp.id LDP _chem_comp.mon_nstd_flag . _chem_comp.name L-DOPAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C1 LDP sing 216 n n C7 C8 LDP sing 217 n n C7 H71 LDP sing 218 n n C7 H72 LDP sing 219 n n C1 C2 LDP doub 220 n y C1 C6 LDP sing 221 n y C4 C5 LDP sing 222 n y C4 C3 LDP doub 223 n y C4 O2 LDP sing 224 n n C2 C3 LDP sing 225 n y C2 H2 LDP sing 226 n n C6 C5 LDP doub 227 n y C6 H6 LDP sing 228 n n C5 H5 LDP sing 229 n n C3 O1 LDP sing 230 n n O1 HO1 LDP sing 231 n n O2 HO2 LDP sing 232 n n C8 N1 LDP sing 233 n n C8 H81 LDP sing 234 n n C8 H82 LDP sing 235 n n N1 HN11 LDP sing 236 n n N1 HN12 LDP sing 237 n n # _atom_sites.entry_id 7F1O _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 LDP F 1 501 1 LDP LIG . G 7 MG A 1 401 1 MG MG . H 8 GDP A 1 402 401 GDP GDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 LDP . . . F 6 99.907 99.04 68.267 1 55.83 ? C7 LDP 501 F 1 HETATM 2 C C1 LDP . . . F 6 98.588 99.768 68.458 1 55.83 ? C1 LDP 501 F 1 HETATM 3 C C4 LDP . . . F 6 96.197 101.079 68.779 1 55.83 ? C4 LDP 501 F 1 HETATM 4 C C2 LDP . . . F 6 98.027 100.436 67.396 1 55.83 ? C2 LDP 501 F 1 HETATM 5 C C6 LDP . . . F 6 97.962 99.751 69.681 1 55.83 ? C6 LDP 501 F 1 HETATM 6 C C5 LDP . . . F 6 96.763 100.408 69.841 1 55.83 ? C5 LDP 501 F 1 HETATM 7 C C3 LDP . . . F 6 96.831 101.09 67.555 1 55.83 ? C3 LDP 501 F 1 HETATM 8 O O1 LDP . . . F 6 96.272 101.77 66.472 1 55.83 ? O1 LDP 501 F 1 HETATM 9 O O2 LDP . . . F 6 94.979 101.743 68.953 1 55.83 ? O2 LDP 501 F 1 HETATM 10 C C8 LDP . . . F 6 100.666 98.858 69.568 1 55.83 ? C8 LDP 501 F 1 HETATM 11 N N1 LDP . . . F 6 101.97 98.31 69.266 1 55.83 ? N1 LDP 501 F 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #