data_7F1U
#
_model_server_result.job_id            s_chgKbk9Oc-r_X-pcBFPw 
_model_server_result.datetime_utc      '2024-11-02 21:33:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7f1u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    7F1U 
#
_exptl.entry_id    7F1U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              378.338 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2E)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-4-(methylsulfanyl)but-2-enoic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7F1U 
_cell.length_a            153.907 
_cell.length_b            152.557 
_cell.length_c            80.9 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7F1U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C THR 210 B THR 210 1_555 B N LLP 211 B LLP 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale2 B C LLP 211 B LLP 211 1_555 B N TYR 212 B TYR 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C13 H19 N2 O7 P S' 
_chem_comp.formula_weight    378.338 
_chem_comp.id                3LM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2E)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-4-(methylsulfanyl)but-2-enoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 3LM doub 1 n n 
C CA 3LM sing 2 n n 
C O2 3LM sing 3 n n 
N CA 3LM sing 4 n n 
N C4A 3LM sing 5 n n 
P OP1 3LM doub 6 n n 
P OP2 3LM sing 7 n n 
P OP3 3LM sing 8 n n 
P OP4 3LM sing 9 n n 
N1 C2 3LM doub 10 n y 
N1 C6 3LM sing 11 n y 
C2 C3 3LM sing 12 n y 
C2 C2A 3LM sing 13 n n 
C3 O3 3LM sing 14 n n 
C3 C4 3LM doub 15 n y 
C4 C5 3LM sing 16 n y 
C4 C4A 3LM sing 17 n n 
C5 C6 3LM doub 18 n y 
C5 C5A 3LM sing 19 n n 
CA CB 3LM doub 20 n n 
CB CG 3LM sing 21 n n 
SD CE 3LM sing 22 n n 
SD CG 3LM sing 23 e n 
C5A OP4 3LM sing 24 n n 
N HN 3LM sing 25 n n 
O3 HO3 3LM sing 26 n n 
C6 H6 3LM sing 27 n n 
CB HB 3LM sing 28 n n 
CE HE 3LM sing 29 n n 
CE HEA 3LM sing 30 n n 
CE HEB 3LM sing 31 n n 
CG HG 3LM sing 32 n n 
CG HGA 3LM sing 33 n n 
C2A H2A 3LM sing 34 n n 
C2A H2A1 3LM sing 35 n n 
C2A H2A2 3LM sing 36 n n 
C4A H4A 3LM sing 37 n n 
C4A H4A1 3LM sing 38 n n 
C5A H5A 3LM sing 39 n n 
C5A H5A1 3LM sing 40 n n 
O2 H2 3LM sing 41 n n 
OP2 HOP2 3LM sing 42 n n 
OP3 HOP3 3LM sing 43 n n 
#
_atom_sites.entry_id                     7F1U 
_atom_sites.fract_transf_matrix[1][1]    0.006497 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006555 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012361 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 3LM A 1 401 401 3LM 3LM . 
F 4 MET B 1 401 401 MET MET . 
G 3 3LM C 1 401 401 3LM 3LM . 
H 3 3LM D 1 401 401 3LM 3LM . 
I 5 HOH A 1 501 103 HOH HOH . 
I 5 HOH A 2 502 43 HOH HOH . 
I 5 HOH A 3 503 3 HOH HOH . 
I 5 HOH A 4 504 20 HOH HOH . 
I 5 HOH A 5 505 102 HOH HOH . 
I 5 HOH A 6 506 69 HOH HOH . 
I 5 HOH A 7 507 47 HOH HOH . 
I 5 HOH A 8 508 88 HOH HOH . 
I 5 HOH A 9 509 109 HOH HOH . 
I 5 HOH A 10 510 5 HOH HOH . 
I 5 HOH A 11 511 4 HOH HOH . 
I 5 HOH A 12 512 105 HOH HOH . 
I 5 HOH A 13 513 26 HOH HOH . 
I 5 HOH A 14 514 18 HOH HOH . 
I 5 HOH A 15 515 79 HOH HOH . 
I 5 HOH A 16 516 24 HOH HOH . 
I 5 HOH A 17 517 72 HOH HOH . 
I 5 HOH A 18 518 84 HOH HOH . 
I 5 HOH A 19 519 104 HOH HOH . 
I 5 HOH A 20 520 97 HOH HOH . 
I 5 HOH A 21 521 81 HOH HOH . 
I 5 HOH A 22 522 14 HOH HOH . 
I 5 HOH A 23 523 2 HOH HOH . 
I 5 HOH A 24 524 63 HOH HOH . 
I 5 HOH A 25 525 33 HOH HOH . 
I 5 HOH A 26 526 83 HOH HOH . 
I 5 HOH A 27 527 99 HOH HOH . 
I 5 HOH A 28 528 76 HOH HOH . 
I 5 HOH A 29 529 65 HOH HOH . 
I 5 HOH A 30 530 44 HOH HOH . 
I 5 HOH A 31 531 58 HOH HOH . 
I 5 HOH A 32 532 36 HOH HOH . 
I 5 HOH A 33 533 112 HOH HOH . 
I 5 HOH A 34 534 45 HOH HOH . 
I 5 HOH A 35 535 119 HOH HOH . 
I 5 HOH A 36 536 92 HOH HOH . 
I 5 HOH A 37 537 77 HOH HOH . 
I 5 HOH A 38 538 82 HOH HOH . 
J 5 HOH B 1 501 15 HOH HOH . 
J 5 HOH B 2 502 37 HOH HOH . 
J 5 HOH B 3 503 101 HOH HOH . 
J 5 HOH B 4 504 98 HOH HOH . 
J 5 HOH B 5 505 57 HOH HOH . 
J 5 HOH B 6 506 19 HOH HOH . 
J 5 HOH B 7 507 115 HOH HOH . 
J 5 HOH B 8 508 28 HOH HOH . 
J 5 HOH B 9 509 34 HOH HOH . 
J 5 HOH B 10 510 27 HOH HOH . 
J 5 HOH B 11 511 52 HOH HOH . 
J 5 HOH B 12 512 17 HOH HOH . 
J 5 HOH B 13 513 123 HOH HOH . 
J 5 HOH B 14 514 40 HOH HOH . 
J 5 HOH B 15 515 46 HOH HOH . 
J 5 HOH B 16 516 13 HOH HOH . 
J 5 HOH B 17 517 70 HOH HOH . 
J 5 HOH B 18 518 22 HOH HOH . 
J 5 HOH B 19 519 59 HOH HOH . 
J 5 HOH B 20 520 61 HOH HOH . 
J 5 HOH B 21 521 87 HOH HOH . 
J 5 HOH B 22 522 113 HOH HOH . 
J 5 HOH B 23 523 8 HOH HOH . 
J 5 HOH B 24 524 48 HOH HOH . 
J 5 HOH B 25 525 96 HOH HOH . 
J 5 HOH B 26 526 55 HOH HOH . 
J 5 HOH B 27 527 116 HOH HOH . 
J 5 HOH B 28 528 85 HOH HOH . 
J 5 HOH B 29 529 86 HOH HOH . 
K 5 HOH C 1 501 25 HOH HOH . 
K 5 HOH C 2 502 51 HOH HOH . 
K 5 HOH C 3 503 53 HOH HOH . 
K 5 HOH C 4 504 75 HOH HOH . 
K 5 HOH C 5 505 38 HOH HOH . 
K 5 HOH C 6 506 32 HOH HOH . 
K 5 HOH C 7 507 80 HOH HOH . 
K 5 HOH C 8 508 56 HOH HOH . 
K 5 HOH C 9 509 49 HOH HOH . 
K 5 HOH C 10 510 121 HOH HOH . 
K 5 HOH C 11 511 42 HOH HOH . 
K 5 HOH C 12 512 23 HOH HOH . 
K 5 HOH C 13 513 35 HOH HOH . 
K 5 HOH C 14 514 6 HOH HOH . 
K 5 HOH C 15 515 114 HOH HOH . 
K 5 HOH C 16 516 54 HOH HOH . 
K 5 HOH C 17 517 108 HOH HOH . 
K 5 HOH C 18 518 120 HOH HOH . 
K 5 HOH C 19 519 73 HOH HOH . 
K 5 HOH C 20 520 122 HOH HOH . 
K 5 HOH C 21 521 106 HOH HOH . 
L 5 HOH D 1 501 110 HOH HOH . 
L 5 HOH D 2 502 93 HOH HOH . 
L 5 HOH D 3 503 78 HOH HOH . 
L 5 HOH D 4 504 31 HOH HOH . 
L 5 HOH D 5 505 50 HOH HOH . 
L 5 HOH D 6 506 41 HOH HOH . 
L 5 HOH D 7 507 60 HOH HOH . 
L 5 HOH D 8 508 62 HOH HOH . 
L 5 HOH D 9 509 16 HOH HOH . 
L 5 HOH D 10 510 68 HOH HOH . 
L 5 HOH D 11 511 117 HOH HOH . 
L 5 HOH D 12 512 21 HOH HOH . 
L 5 HOH D 13 513 12 HOH HOH . 
L 5 HOH D 14 514 1 HOH HOH . 
L 5 HOH D 15 515 7 HOH HOH . 
L 5 HOH D 16 516 11 HOH HOH . 
L 5 HOH D 17 517 64 HOH HOH . 
L 5 HOH D 18 518 9 HOH HOH . 
L 5 HOH D 19 519 30 HOH HOH . 
L 5 HOH D 20 520 90 HOH HOH . 
L 5 HOH D 21 521 95 HOH HOH . 
L 5 HOH D 22 522 118 HOH HOH . 
L 5 HOH D 23 523 124 HOH HOH . 
L 5 HOH D 24 524 74 HOH HOH . 
L 5 HOH D 25 525 39 HOH HOH . 
L 5 HOH D 26 526 94 HOH HOH . 
L 5 HOH D 27 527 29 HOH HOH . 
L 5 HOH D 28 528 10 HOH HOH . 
L 5 HOH D 29 529 107 HOH HOH . 
L 5 HOH D 30 530 66 HOH HOH . 
L 5 HOH D 31 531 89 HOH HOH . 
L 5 HOH D 32 532 71 HOH HOH . 
L 5 HOH D 33 533 91 HOH HOH . 
L 5 HOH D 34 534 67 HOH HOH . 
L 5 HOH D 35 535 100 HOH HOH . 
L 5 HOH D 36 536 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C 3LM . . . E 3 -41.795 -2.061 -52.13 1 55.79 ? C 3LM 401 A 1 
HETATM 2 N N 3LM . . . E 3 -43.576 -3.263 -50.932 1 49.55 ? N 3LM 401 A 1 
HETATM 3 O O1 3LM . . . E 3 -42.295 -2.397 -53.226 1 57.34 ? O1 3LM 401 A 1 
HETATM 4 P P 3LM . . . E 3 -45.779 -3.885 -45.895 1 25.98 ? P 3LM 401 A 1 
HETATM 5 N N1 3LM . . . E 3 -47.42 -6.416 -51.025 1 31.31 ? N1 3LM 401 A 1 
HETATM 6 C C2 3LM . . . E 3 -46.954 -5.552 -51.998 1 32.68 ? C2 3LM 401 A 1 
HETATM 7 C C3 3LM . . . E 3 -45.999 -4.614 -51.637 1 33.81 ? C3 3LM 401 A 1 
HETATM 8 O O3 3LM . . . E 3 -45.57 -3.768 -52.614 1 34.66 ? O3 3LM 401 A 1 
HETATM 9 C C4 3LM . . . E 3 -45.513 -4.48 -50.315 1 36 ? C4 3LM 401 A 1 
HETATM 10 C C5 3LM . . . E 3 -46.026 -5.418 -49.365 1 32.12 ? C5 3LM 401 A 1 
HETATM 11 C C6 3LM . . . E 3 -46.982 -6.355 -49.785 1 31.28 ? C6 3LM 401 A 1 
HETATM 12 C CA 3LM . . . E 3 -42.464 -2.478 -50.795 1 55.99 ? CA 3LM 401 A 1 
HETATM 13 C CB 3LM . . . E 3 -41.795 -2.216 -49.422 1 59.69 ? CB 3LM 401 A 1 
HETATM 14 S SD 3LM . . . E 3 -39.337 -3.181 -48.278 1 85.61 ? SD 3LM 401 A 1 
HETATM 15 C CE 3LM . . . E 3 -38.255 -4.343 -49.096 1 79.5 ? CE 3LM 401 A 1 
HETATM 16 C CG 3LM . . . E 3 -40.293 -2.462 -49.679 1 64.79 ? CG 3LM 401 A 1 
HETATM 17 C C2A 3LM . . . E 3 -47.465 -5.674 -53.305 1 34.15 ? C2A 3LM 401 A 1 
HETATM 18 C C4A 3LM . . . E 3 -44.508 -3.533 -49.985 1 43.22 ? C4A 3LM 401 A 1 
HETATM 19 C C5A 3LM . . . E 3 -45.646 -5.501 -47.993 1 29.97 ? C5A 3LM 401 A 1 
HETATM 20 O OP1 3LM . . . E 3 -46.922 -2.994 -45.608 1 26.77 ? OP1 3LM 401 A 1 
HETATM 21 O OP2 3LM . . . E 3 -44.572 -3.247 -46.435 1 25.67 ? OP2 3LM 401 A 1 
HETATM 22 O OP3 3LM . . . E 3 -45.66 -5.147 -45.128 1 25.22 ? OP3 3LM 401 A 1 
HETATM 23 O OP4 3LM . . . E 3 -46.376 -4.557 -47.253 1 26.72 ? OP4 3LM 401 A 1 
HETATM 24 O O2 3LM . . . E 3 -40.763 -1.372 -52.145 1 57.96 ? O2 3LM 401 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           24 
#