data_7F1V # _model_server_result.job_id eZR5HA35XljuFTLJZqj3RQ _model_server_result.datetime_utc '2024-11-02 19:32:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 7F1V # _exptl.entry_id 7F1V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.327 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-4-sulfanyl-butanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F1V _cell.length_a 154.075 _cell.length_b 152.299 _cell.length_c 80.508 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 211 A LYS 211 1_555 E CAL 7XF . A 7XF 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale2 B C THR 210 B THR 210 1_555 B N LLP 211 B LLP 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C LLP 211 B LLP 211 1_555 B N TYR 212 B TYR 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 D C THR 210 D THR 210 1_555 D N LLP 211 D LLP 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 D C LLP 211 D LLP 211 1_555 D N TYR 212 D TYR 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C12 H19 N2 O7 P S' _chem_comp.formula_weight 366.327 _chem_comp.id 7XF _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-4-sulfanyl-butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAR 7XF sing 1 n n O C 7XF doub 2 n n OXT C 7XF sing 3 n n OAE CAT 7XF sing 4 n n C CA 7XF sing 5 n n CAR CAT 7XF doub 6 n y CAR NAN 7XF sing 7 n y CAT CAU 7XF sing 8 n y NAN CAI 7XF doub 9 n y N CA 7XF sing 10 n n N CAL 7XF sing 11 n n CA CB 7XF sing 12 n n CAU CAL 7XF sing 13 n n CAU CAS 7XF doub 14 n y CB CAJ 7XF sing 15 n n CAI CAS 7XF sing 16 n y CAJ SAH 7XF sing 17 n n CAS CAM 7XF sing 18 n n CAM OAP 7XF sing 19 n n OAP PAW 7XF sing 20 n n OAF PAW 7XF doub 21 n n PAW OAG 7XF sing 22 n n PAW OAC 7XF sing 23 n n OAG H1 7XF sing 24 n n OAC H2 7XF sing 25 n n CAM H3 7XF sing 26 n n CAM H4 7XF sing 27 n n CAI H5 7XF sing 28 n n CAA H6 7XF sing 29 n n CAA H7 7XF sing 30 n n CAA H8 7XF sing 31 n n OAE H9 7XF sing 32 n n CAL H10 7XF sing 33 n n CAL H11 7XF sing 34 n n N H12 7XF sing 35 n n CA H14 7XF sing 36 n n OXT H15 7XF sing 37 n n CB H16 7XF sing 38 n n CB H17 7XF sing 39 n n CAJ H18 7XF sing 40 n n CAJ H19 7XF sing 41 n n SAH H20 7XF sing 42 n n # _atom_sites.entry_id 7F1V _atom_sites.fract_transf_matrix[1][1] 0.00649 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012421 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 7XF A 1 401 401 7XF DRG . F 3 7XF C 1 401 401 7XF DRG . G 4 HCS D 1 401 401 HCS HCS . H 5 HOH A 1 501 74 HOH HOH . H 5 HOH A 2 502 52 HOH HOH . H 5 HOH A 3 503 11 HOH HOH . H 5 HOH A 4 504 43 HOH HOH . H 5 HOH A 5 505 18 HOH HOH . H 5 HOH A 6 506 56 HOH HOH . H 5 HOH A 7 507 23 HOH HOH . H 5 HOH A 8 508 109 HOH HOH . H 5 HOH A 9 509 24 HOH HOH . H 5 HOH A 10 510 15 HOH HOH . H 5 HOH A 11 511 32 HOH HOH . H 5 HOH A 12 512 106 HOH HOH . H 5 HOH A 13 513 87 HOH HOH . H 5 HOH A 14 514 176 HOH HOH . H 5 HOH A 15 515 206 HOH HOH . H 5 HOH A 16 516 207 HOH HOH . H 5 HOH A 17 517 135 HOH HOH . H 5 HOH A 18 518 80 HOH HOH . H 5 HOH A 19 519 59 HOH HOH . H 5 HOH A 20 520 53 HOH HOH . H 5 HOH A 21 521 9 HOH HOH . H 5 HOH A 22 522 152 HOH HOH . H 5 HOH A 23 523 203 HOH HOH . H 5 HOH A 24 524 196 HOH HOH . H 5 HOH A 25 525 122 HOH HOH . H 5 HOH A 26 526 178 HOH HOH . H 5 HOH A 27 527 212 HOH HOH . H 5 HOH A 28 528 194 HOH HOH . H 5 HOH A 29 529 174 HOH HOH . H 5 HOH A 30 530 188 HOH HOH . H 5 HOH A 31 531 116 HOH HOH . H 5 HOH A 32 532 138 HOH HOH . H 5 HOH A 33 533 49 HOH HOH . H 5 HOH A 34 534 187 HOH HOH . H 5 HOH A 35 535 16 HOH HOH . H 5 HOH A 36 536 54 HOH HOH . H 5 HOH A 37 537 195 HOH HOH . H 5 HOH A 38 538 101 HOH HOH . H 5 HOH A 39 539 19 HOH HOH . H 5 HOH A 40 540 120 HOH HOH . H 5 HOH A 41 541 121 HOH HOH . H 5 HOH A 42 542 34 HOH HOH . H 5 HOH A 43 543 81 HOH HOH . H 5 HOH A 44 544 85 HOH HOH . H 5 HOH A 45 545 113 HOH HOH . H 5 HOH A 46 546 155 HOH HOH . H 5 HOH A 47 547 148 HOH HOH . H 5 HOH A 48 548 211 HOH HOH . H 5 HOH A 49 549 130 HOH HOH . H 5 HOH A 50 550 107 HOH HOH . H 5 HOH A 51 551 117 HOH HOH . H 5 HOH A 52 552 132 HOH HOH . H 5 HOH A 53 553 67 HOH HOH . H 5 HOH A 54 554 96 HOH HOH . H 5 HOH A 55 555 150 HOH HOH . H 5 HOH A 56 556 157 HOH HOH . H 5 HOH A 57 557 160 HOH HOH . H 5 HOH A 58 558 71 HOH HOH . H 5 HOH A 59 559 136 HOH HOH . H 5 HOH A 60 560 137 HOH HOH . H 5 HOH A 61 561 55 HOH HOH . H 5 HOH A 62 562 191 HOH HOH . H 5 HOH A 63 563 171 HOH HOH . I 5 HOH B 1 401 2 HOH HOH . I 5 HOH B 2 402 123 HOH HOH . I 5 HOH B 3 403 142 HOH HOH . I 5 HOH B 4 404 22 HOH HOH . I 5 HOH B 5 405 33 HOH HOH . I 5 HOH B 6 406 213 HOH HOH . I 5 HOH B 7 407 37 HOH HOH . I 5 HOH B 8 408 31 HOH HOH . I 5 HOH B 9 409 64 HOH HOH . I 5 HOH B 10 410 169 HOH HOH . I 5 HOH B 11 411 45 HOH HOH . I 5 HOH B 12 412 209 HOH HOH . I 5 HOH B 13 413 30 HOH HOH . I 5 HOH B 14 414 190 HOH HOH . I 5 HOH B 15 415 186 HOH HOH . I 5 HOH B 16 416 182 HOH HOH . I 5 HOH B 17 417 58 HOH HOH . I 5 HOH B 18 418 108 HOH HOH . I 5 HOH B 19 419 198 HOH HOH . I 5 HOH B 20 420 66 HOH HOH . I 5 HOH B 21 421 156 HOH HOH . I 5 HOH B 22 422 51 HOH HOH . I 5 HOH B 23 423 48 HOH HOH . I 5 HOH B 24 424 170 HOH HOH . I 5 HOH B 25 425 20 HOH HOH . I 5 HOH B 26 426 69 HOH HOH . I 5 HOH B 27 427 153 HOH HOH . I 5 HOH B 28 428 161 HOH HOH . I 5 HOH B 29 429 8 HOH HOH . I 5 HOH B 30 430 172 HOH HOH . I 5 HOH B 31 431 145 HOH HOH . I 5 HOH B 32 432 46 HOH HOH . I 5 HOH B 33 433 112 HOH HOH . I 5 HOH B 34 434 193 HOH HOH . I 5 HOH B 35 435 91 HOH HOH . I 5 HOH B 36 436 5 HOH HOH . I 5 HOH B 37 437 79 HOH HOH . I 5 HOH B 38 438 128 HOH HOH . I 5 HOH B 39 439 164 HOH HOH . I 5 HOH B 40 440 189 HOH HOH . I 5 HOH B 41 441 4 HOH HOH . I 5 HOH B 42 442 82 HOH HOH . I 5 HOH B 43 443 192 HOH HOH . I 5 HOH B 44 444 119 HOH HOH . I 5 HOH B 45 445 200 HOH HOH . I 5 HOH B 46 446 103 HOH HOH . I 5 HOH B 47 447 163 HOH HOH . I 5 HOH B 48 448 76 HOH HOH . I 5 HOH B 49 449 126 HOH HOH . I 5 HOH B 50 450 38 HOH HOH . I 5 HOH B 51 451 95 HOH HOH . I 5 HOH B 52 452 162 HOH HOH . I 5 HOH B 53 453 100 HOH HOH . I 5 HOH B 54 454 114 HOH HOH . J 5 HOH C 1 501 13 HOH HOH . J 5 HOH C 2 502 83 HOH HOH . J 5 HOH C 3 503 35 HOH HOH . J 5 HOH C 4 504 47 HOH HOH . J 5 HOH C 5 505 167 HOH HOH . J 5 HOH C 6 506 29 HOH HOH . J 5 HOH C 7 507 110 HOH HOH . J 5 HOH C 8 508 25 HOH HOH . J 5 HOH C 9 509 159 HOH HOH . J 5 HOH C 10 510 214 HOH HOH . J 5 HOH C 11 511 41 HOH HOH . J 5 HOH C 12 512 68 HOH HOH . J 5 HOH C 13 513 179 HOH HOH . J 5 HOH C 14 514 61 HOH HOH . J 5 HOH C 15 515 78 HOH HOH . J 5 HOH C 16 516 93 HOH HOH . J 5 HOH C 17 517 62 HOH HOH . J 5 HOH C 18 518 63 HOH HOH . J 5 HOH C 19 519 133 HOH HOH . J 5 HOH C 20 520 177 HOH HOH . J 5 HOH C 21 521 202 HOH HOH . J 5 HOH C 22 522 181 HOH HOH . J 5 HOH C 23 523 14 HOH HOH . J 5 HOH C 24 524 17 HOH HOH . J 5 HOH C 25 525 158 HOH HOH . J 5 HOH C 26 526 88 HOH HOH . J 5 HOH C 27 527 205 HOH HOH . J 5 HOH C 28 528 129 HOH HOH . J 5 HOH C 29 529 104 HOH HOH . J 5 HOH C 30 530 77 HOH HOH . J 5 HOH C 31 531 102 HOH HOH . J 5 HOH C 32 532 144 HOH HOH . J 5 HOH C 33 533 201 HOH HOH . K 5 HOH D 1 501 27 HOH HOH . K 5 HOH D 2 502 173 HOH HOH . K 5 HOH D 3 503 39 HOH HOH . K 5 HOH D 4 504 1 HOH HOH . K 5 HOH D 5 505 40 HOH HOH . K 5 HOH D 6 506 12 HOH HOH . K 5 HOH D 7 507 60 HOH HOH . K 5 HOH D 8 508 44 HOH HOH . K 5 HOH D 9 509 42 HOH HOH . K 5 HOH D 10 510 26 HOH HOH . K 5 HOH D 11 511 10 HOH HOH . K 5 HOH D 12 512 36 HOH HOH . K 5 HOH D 13 513 3 HOH HOH . K 5 HOH D 14 514 210 HOH HOH . K 5 HOH D 15 515 183 HOH HOH . K 5 HOH D 16 516 50 HOH HOH . K 5 HOH D 17 517 98 HOH HOH . K 5 HOH D 18 518 6 HOH HOH . K 5 HOH D 19 519 65 HOH HOH . K 5 HOH D 20 520 7 HOH HOH . K 5 HOH D 21 521 185 HOH HOH . K 5 HOH D 22 522 84 HOH HOH . K 5 HOH D 23 523 75 HOH HOH . K 5 HOH D 24 524 21 HOH HOH . K 5 HOH D 25 525 111 HOH HOH . K 5 HOH D 26 526 72 HOH HOH . K 5 HOH D 27 527 180 HOH HOH . K 5 HOH D 28 528 199 HOH HOH . K 5 HOH D 29 529 99 HOH HOH . K 5 HOH D 30 530 73 HOH HOH . K 5 HOH D 31 531 204 HOH HOH . K 5 HOH D 32 532 184 HOH HOH . K 5 HOH D 33 533 166 HOH HOH . K 5 HOH D 34 534 118 HOH HOH . K 5 HOH D 35 535 146 HOH HOH . K 5 HOH D 36 536 97 HOH HOH . K 5 HOH D 37 537 89 HOH HOH . K 5 HOH D 38 538 28 HOH HOH . K 5 HOH D 39 539 124 HOH HOH . K 5 HOH D 40 540 175 HOH HOH . K 5 HOH D 41 541 70 HOH HOH . K 5 HOH D 42 542 94 HOH HOH . K 5 HOH D 43 543 131 HOH HOH . K 5 HOH D 44 544 57 HOH HOH . K 5 HOH D 45 545 105 HOH HOH . K 5 HOH D 46 546 115 HOH HOH . K 5 HOH D 47 547 140 HOH HOH . K 5 HOH D 48 548 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAF 7XF . . . F 3 45.537 25.754 20.142 1 33.6 ? OAF 7XF 401 C 1 HETATM 2 P PAW 7XF . . . F 3 44.884 27.055 20.192 1 32.42 ? PAW 7XF 401 C 1 HETATM 3 O OAG 7XF . . . F 3 43.432 27.049 20.324 1 31.55 ? OAG 7XF 401 C 1 HETATM 4 O OAC 7XF . . . F 3 45.662 28.217 20.652 1 30.75 ? OAC 7XF 401 C 1 HETATM 5 O OAP 7XF . . . F 3 44.962 27.468 18.627 1 36.66 ? OAP 7XF 401 C 1 HETATM 6 C CAM 7XF . . . F 3 44.388 28.696 18.1 1 41.05 ? CAM 7XF 401 C 1 HETATM 7 C CAS 7XF . . . F 3 43.978 28.573 16.61 1 43.5 ? CAS 7XF 401 C 1 HETATM 8 C CAI 7XF . . . F 3 44.924 29.017 15.668 1 44.41 ? CAI 7XF 401 C 1 HETATM 9 N NAN 7XF . . . F 3 44.71 28.958 14.355 1 43.11 ? NAN 7XF 401 C 1 HETATM 10 C CAR 7XF . . . F 3 43.507 28.454 13.84 1 43.58 ? CAR 7XF 401 C 1 HETATM 11 C CAA 7XF . . . F 3 43.316 28.427 12.457 1 43.61 ? CAA 7XF 401 C 1 HETATM 12 C CAT 7XF . . . F 3 42.544 28.016 14.749 1 45.37 ? CAT 7XF 401 C 1 HETATM 13 O OAE 7XF . . . F 3 41.356 27.548 14.271 1 44.22 ? OAE 7XF 401 C 1 HETATM 14 C CAU 7XF . . . F 3 42.737 28.058 16.148 1 48.44 ? CAU 7XF 401 C 1 HETATM 15 C CAL 7XF . . . F 3 41.604 27.575 17.118 1 54.79 ? CAL 7XF 401 C 1 HETATM 16 N N 7XF . . . F 3 40.22 27.736 16.605 1 61.87 ? N 7XF 401 C 1 HETATM 17 C CA 7XF . . . F 3 39.172 26.762 17.029 1 64.96 ? CA 7XF 401 C 1 HETATM 18 C C 7XF . . . F 3 38.021 26.942 16.005 1 65.45 ? C 7XF 401 C 1 HETATM 19 O O 7XF . . . F 3 38.318 27.426 14.883 1 67.92 ? O 7XF 401 C 1 HETATM 20 O OXT 7XF . . . F 3 36.866 26.608 16.348 1 65.82 ? OXT 7XF 401 C 1 HETATM 21 C CB 7XF . . . F 3 38.57 26.814 18.457 1 70.03 ? CB 7XF 401 C 1 HETATM 22 C CAJ 7XF . . . F 3 39.323 27.727 19.409 1 72.52 ? CAJ 7XF 401 C 1 HETATM 23 S SAH 7XF . . . F 3 38.138 28.545 20.58 1 89.71 ? SAH 7XF 401 C 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 23 #